pmotools 1.2.1__tar.gz → 1.2.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (62) hide show
  1. {pmotools-1.2.1 → pmotools-1.2.2}/PKG-INFO +1 -2
  2. {pmotools-1.2.1 → pmotools-1.2.2}/pyproject.toml +2 -2
  3. {pmotools-1.2.1 → pmotools-1.2.2}/LICENSE +0 -0
  4. {pmotools-1.2.1 → pmotools-1.2.2}/README.md +0 -0
  5. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/__init__.py +0 -0
  6. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/cli.py +0 -0
  7. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_builder/__init__.py +0 -0
  8. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_builder/json_convert_utils.py +0 -0
  9. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_builder/merge_to_pmo.py +0 -0
  10. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_builder/metatable_to_pmo.py +0 -0
  11. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_builder/mhap_table_to_pmo.py +0 -0
  12. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_builder/panel_information_to_pmo.py +0 -0
  13. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_builder/pmo_updater.py +0 -0
  14. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_builder/read_count_by_stage_table_to_pmo.py +0 -0
  15. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_engine/__init__.py +0 -0
  16. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_engine/pmo_checker.py +0 -0
  17. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_engine/pmo_exporter.py +0 -0
  18. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_engine/pmo_processor.py +0 -0
  19. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_engine/pmo_reader.py +0 -0
  20. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/pmo_engine/pmo_writer.py +0 -0
  21. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/schemas/portable_microhaplotype_object_v1.0.0.schema.json +0 -0
  22. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/schemas/portable_microhaplotype_object_v1.1.0.schema.json +0 -0
  23. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/__init__.py +0 -0
  24. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/convertors_to_pmo/__init__.py +0 -0
  25. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/convertors_to_pmo/excel_meta_to_json_meta.py +0 -0
  26. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/convertors_to_pmo/microhaplotype_table_to_json_file.py +0 -0
  27. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/convertors_to_pmo/terra_amp_output_to_json.py +0 -0
  28. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/convertors_to_pmo/text_meta_to_json_meta.py +0 -0
  29. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/extract_info_from_pmo/__init__.py +0 -0
  30. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/extract_info_from_pmo/count_library_samples_per_target.py +0 -0
  31. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/extract_info_from_pmo/count_specimen_meta.py +0 -0
  32. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/extract_info_from_pmo/count_targets_per_library_sample.py +0 -0
  33. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/extract_info_from_pmo/list_bioinformatics_run_names.py +0 -0
  34. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/extract_info_from_pmo/list_library_sample_names_per_specimen_name.py +0 -0
  35. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/extract_info_from_pmo/list_specimen_meta_fields.py +0 -0
  36. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/extractors_from_pmo/__init__.py +0 -0
  37. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/extractors_from_pmo/extract_pmo_with_read_filter.py +0 -0
  38. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/extractors_from_pmo/extract_pmo_with_select_library_sample_names.py +0 -0
  39. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/extractors_from_pmo/extract_pmo_with_select_specimen_names.py +0 -0
  40. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/extractors_from_pmo/extract_pmo_with_select_targets.py +0 -0
  41. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/extractors_from_pmo/extract_pmo_with_selected_meta.py +0 -0
  42. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/__init__.py +0 -0
  43. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/export_bioinformatics_methods_info_meta_table.py +0 -0
  44. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/export_bioinformatics_run_info_meta_table.py +0 -0
  45. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/export_library_sample_meta_table.py +0 -0
  46. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/export_panel_info_meta_table.py +0 -0
  47. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/export_pmo_into_xlsx.py +0 -0
  48. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/export_project_info_meta_table.py +0 -0
  49. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/export_sequencing_info_meta_table.py +0 -0
  50. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/export_specimen_meta_table.py +0 -0
  51. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/export_specimen_travel_meta_table.py +0 -0
  52. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/export_target_info_meta_table.py +0 -0
  53. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/export_targeted_genomes_meta_table.py +0 -0
  54. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/extract_allele_table.py +0 -0
  55. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/extract_insert_of_panels.py +0 -0
  56. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_to_tables/extract_refseq_of_inserts_of_panels.py +0 -0
  57. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_utils/__init__.py +0 -0
  58. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_utils/combine_pmos.py +0 -0
  59. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/scripts/pmo_utils/validate_pmo.py +0 -0
  60. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/utils/__init__.py +0 -0
  61. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/utils/color_text.py +0 -0
  62. {pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/utils/small_utils.py +0 -0
{pmotools-1.2.1 → pmotools-1.2.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.3
2
2
  Name: pmotools
3
- Version: 1.2.1
3
+ Version: 1.2.2
4
4
  Summary: Tools for building and analyzing PMO files
5
5
  Author: Nicholas Hathaway, Kathryn Murie
6
6
  Author-email: Nicholas Hathaway <nickjhathaway@gmail.com>, Kathryn Murie <kathryn.murie@ucsf.edu>
@@ -681,7 +681,6 @@ License: GNU GENERAL PUBLIC LICENSE
681
681
  Requires-Dist: pandas>=2.2.2
682
682
  Requires-Dist: biopython>=1.83
683
683
  Requires-Dist: jsonschema>=4.23.0
684
- Requires-Dist: pre-commit
685
684
  Requires-Dist: openpyxl>=3.1.5
686
685
  Requires-Python: >=3.11
687
686
  Description-Content-Type: text/markdown
{pmotools-1.2.1 → pmotools-1.2.2}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
1
1
  [project]
2
2
  name = "pmotools"
3
- version = "v1.2.1"
3
+ version = "v1.2.2"
4
4
  description = "Tools for building and analyzing PMO files"
5
5
  readme = "README.md"
6
6
  authors = [
@@ -13,7 +13,6 @@ dependencies = [
13
13
  "pandas>=2.2.2",
14
14
  "biopython>=1.83",
15
15
  "jsonschema>=4.23.0",
16
- "pre-commit",
17
16
  "openpyxl>=3.1.5",
18
17
  ]
19
18
 
@@ -26,6 +25,7 @@ build-backend = "uv_build"
26
25
 
27
26
  [dependency-groups]
28
27
  dev = [
28
+ "pre-commit",
29
29
  "pytest>=8.4.1",
30
30
  ]
31
31
 
{pmotools-1.2.1 → pmotools-1.2.2}/LICENSE RENAMED
File without changes
{pmotools-1.2.1 → pmotools-1.2.2}/README.md RENAMED
File without changes
{pmotools-1.2.1 → pmotools-1.2.2}/src/pmotools/cli.py RENAMED
File without changes