PyPI - pma-python - Versions diffs - 2.0.0.183__tar.gz → 2.0.0.184__tar.gz - Mend

pma-python 2.0.0.183tar.gz → 2.0.0.184tar.gz

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Files changed (20) hide show

{pma_python-2.0.0.183 → pma_python-2.0.0.184}/PKG-INFO RENAMED Viewed

@@ -1,15 +1,16 @@
 Metadata-Version: 2.4
 Name: pma_python
-Version: 2.0.0.183
+Version: 2.0.0.184
 Summary: Universal viewing of digital microscopy, whole slide imaging and digital pathology data
 Home-page: https://github.com/pathomation/pma_python
 Author: Pathomation
 Author-email: info@pathomation.com
 License: https://www.pathomation.com/contact/
-Keywords: wsi whole slide imaging gigapixel microscopy histology pathology
+Keywords: wsi whole slide imaging gigapixel microscopy histology pathology digital pathology pma pma.python pathomation pma.core
 Classifier: Development Status :: 3 - Alpha
 Classifier: Programming Language :: Python :: 3
 Requires-Python: >=3
+Description-Content-Type: text/markdown
 Requires-Dist: pandas
 Requires-Dist: pillow
 Requires-Dist: requests
@@ -18,6 +19,7 @@ Dynamic: author
 Dynamic: author-email
 Dynamic: classifier
 Dynamic: description
+Dynamic: description-content-type
 Dynamic: home-page
 Dynamic: keywords
 Dynamic: license
@@ -25,22 +27,28 @@ Dynamic: requires-dist
 Dynamic: requires-python
 Dynamic: summary
-pma_python is a Python wrapper library for PMA.start (http://free.pathomation.com),
+# pma_python
+pma_python is a Python wrapper library for PMA.core ([https://www.pathomation.com](https://www.pathomation.com)),
 a universal viewer by Pathomation for whole slide imaging and microscopy.
-YOU NEED TO HAVE PMA.START (OR PMA.CORE) RUNNING IN ORDER TO USE THIS
+YOU NEED TO HAVE PMA.core (or PMA.START) RUNNING IN ORDER TO USE THIS
 LIBRARY. PMA_PYTHON IS NOT A STAND-ALONE LIBRARY FOR WSI.
 If you're working with
-* microscopy data and are you tired of having to use a different library for each vendor specific digital slide format
-* image analysis software and are you looking for a way to have complete control over your algorithms (and not just be able to select those provided for you)
-* novel evaluation methods for histology / pathology and do you just wish there was a way to now automatically evaluate it on 100s of slides (batch processing)
+* microscopy data and are you tired of having to use a different
+library for each vendor specific digital slide format
+* image analysis software and are you looking for a way to have
+complete control over your algorithms (and not just be able to
+select those provided for you)
+* novel evaluation methods for histology / pathology and do you
+just wish there was a way to now automatically evaluate it on
+100s of slides (batch processing)
-and you're doing all of this in Python, then PMA.start and
+and you're doing all of this in Python, then PMA.core (or PMA.start) and
 pma_python are for you!
-PMA.start can be downloaded free of charge from http://free.pathomation.com
+PMA.start can be downloaded from [https://www.pathomation.com/pmastart](https://www.pathomation.com/pmastart)
 With pma_python, you can inspect and navigate any type of
 microscopic imaging file format available. Whether you have
@@ -72,5 +80,19 @@ The following vendor formats are currently supported:
 * Perkin Elmer (.qptiff)
 The most up to date list with supported file formats can be found at
-http://free.pathomation.com/formats
+[http://www.pathomation.com/formats](https://www.pathomation.com/formats)
+## Installation from source
+To install from pypi
+```sh
+pip install pma_python
+```
+To upgrade an already existing version from pypi
+```sh
+pip install --upgrade pma_python
+```
+## How to use
+```python
+>>> from pma_python import *
+```

pma_python-2.0.0.184/pma_python/version.py ADDED Viewed

	@@ -0,0 +1 @@
1	+ __version__ = '2.0.0.184'

{pma_python-2.0.0.183 → pma_python-2.0.0.184}/pma_python.egg-info/PKG-INFO RENAMED Viewed

@@ -1,15 +1,16 @@
 Metadata-Version: 2.4
 Name: pma_python
-Version: 2.0.0.183
+Version: 2.0.0.184
 Summary: Universal viewing of digital microscopy, whole slide imaging and digital pathology data
 Home-page: https://github.com/pathomation/pma_python
 Author: Pathomation
 Author-email: info@pathomation.com
 License: https://www.pathomation.com/contact/
-Keywords: wsi whole slide imaging gigapixel microscopy histology pathology
+Keywords: wsi whole slide imaging gigapixel microscopy histology pathology digital pathology pma pma.python pathomation pma.core
 Classifier: Development Status :: 3 - Alpha
 Classifier: Programming Language :: Python :: 3
 Requires-Python: >=3
+Description-Content-Type: text/markdown
 Requires-Dist: pandas
 Requires-Dist: pillow
 Requires-Dist: requests
@@ -18,6 +19,7 @@ Dynamic: author
 Dynamic: author-email
 Dynamic: classifier
 Dynamic: description
+Dynamic: description-content-type
 Dynamic: home-page
 Dynamic: keywords
 Dynamic: license
@@ -25,22 +27,28 @@ Dynamic: requires-dist
 Dynamic: requires-python
 Dynamic: summary
-pma_python is a Python wrapper library for PMA.start (http://free.pathomation.com),
+# pma_python
+pma_python is a Python wrapper library for PMA.core ([https://www.pathomation.com](https://www.pathomation.com)),
 a universal viewer by Pathomation for whole slide imaging and microscopy.
-YOU NEED TO HAVE PMA.START (OR PMA.CORE) RUNNING IN ORDER TO USE THIS
+YOU NEED TO HAVE PMA.core (or PMA.START) RUNNING IN ORDER TO USE THIS
 LIBRARY. PMA_PYTHON IS NOT A STAND-ALONE LIBRARY FOR WSI.
 If you're working with
-* microscopy data and are you tired of having to use a different library for each vendor specific digital slide format
-* image analysis software and are you looking for a way to have complete control over your algorithms (and not just be able to select those provided for you)
-* novel evaluation methods for histology / pathology and do you just wish there was a way to now automatically evaluate it on 100s of slides (batch processing)
+* microscopy data and are you tired of having to use a different
+library for each vendor specific digital slide format
+* image analysis software and are you looking for a way to have
+complete control over your algorithms (and not just be able to
+select those provided for you)
+* novel evaluation methods for histology / pathology and do you
+just wish there was a way to now automatically evaluate it on
+100s of slides (batch processing)
-and you're doing all of this in Python, then PMA.start and
+and you're doing all of this in Python, then PMA.core (or PMA.start) and
 pma_python are for you!
-PMA.start can be downloaded free of charge from http://free.pathomation.com
+PMA.start can be downloaded from [https://www.pathomation.com/pmastart](https://www.pathomation.com/pmastart)
 With pma_python, you can inspect and navigate any type of
 microscopic imaging file format available. Whether you have
@@ -72,5 +80,19 @@ The following vendor formats are currently supported:
 * Perkin Elmer (.qptiff)
 The most up to date list with supported file formats can be found at
-http://free.pathomation.com/formats
+[http://www.pathomation.com/formats](https://www.pathomation.com/formats)
+## Installation from source
+To install from pypi
+```sh
+pip install pma_python
+```
+To upgrade an already existing version from pypi
+```sh
+pip install --upgrade pma_python
+```
+## How to use
+```python
+>>> from pma_python import *
+```

{pma_python-2.0.0.183 → pma_python-2.0.0.184}/pma_python.egg-info/SOURCES.txt RENAMED Viewed

@@ -1,5 +1,4 @@
 README.md
-long_desc.txt
 setup.py
 pma_python/__init__.py
 pma_python/control.py

{pma_python-2.0.0.183 → pma_python-2.0.0.184}/setup.py RENAMED Viewed

@@ -24,17 +24,18 @@ def extract_version(v):
 setup(name='pma_python',
       version=extract_version(read("pma_python/version.py")),
       description='Universal viewing of digital microscopy, whole slide imaging and digital pathology data',
-      long_description=read('long_desc.txt'),
+      long_description=read('README.md'),
+      long_description_content_type='text/markdown',
       url='https://github.com/pathomation/pma_python',
       author='Pathomation',
       author_email='info@pathomation.com',
       license='https://www.pathomation.com/contact/',
       packages=['pma_python'],
-      data_files=[('', ['long_desc.txt'])],
+      data_files=[('', ['README.md'])],
       classifiers=[
           'Development Status :: 3 - Alpha',
           'Programming Language :: Python :: 3'],
-      keywords='wsi whole slide imaging gigapixel microscopy histology pathology',
+      keywords='wsi whole slide imaging gigapixel microscopy histology pathology digital pathology pma pma.python pathomation pma.core',
       install_requires=['pandas', 'pillow', 'requests', 'requests_toolbelt'],
       python_requires='>=3',  # assume this only works in Python 3
       zip_safe=False)

pma_python-2.0.0.183/long_desc.txt DELETED Viewed

@@ -1,49 +0,0 @@
-pma_python is a Python wrapper library for PMA.start (http://free.pathomation.com),
-a universal viewer by Pathomation for whole slide imaging and microscopy.
-YOU NEED TO HAVE PMA.START (OR PMA.CORE) RUNNING IN ORDER TO USE THIS
-LIBRARY. PMA_PYTHON IS NOT A STAND-ALONE LIBRARY FOR WSI.
-If you're working with
-* microscopy data and are you tired of having to use a different library for each vendor specific digital slide format
-* image analysis software and are you looking for a way to have complete control over your algorithms (and not just be able to select those provided for you)
-* novel evaluation methods for histology / pathology and do you just wish there was a way to now automatically evaluate it on 100s of slides (batch processing)
-and you're doing all of this in Python, then PMA.start and
-pma_python are for you!
-PMA.start can be downloaded free of charge from http://free.pathomation.com
-With pma_python, you can inspect and navigate any type of
-microscopic imaging file format available. Whether you have
-macroscopic observations, whole slide imaging data, or fluorescent
-snapshot observations, we can bring it all into Python now.
-The following vendor formats are currently supported:
-* TIFF (.tif, .tiff) with JPEG, JPEG2000, LZW, Deflate, Raw, RLE
-* JPEG (.jpeg, .jpg)
-* JPEG 2000 (.jp2)
-* PNG (.png)
-* Olympus VSI (.vsi) with lossless JPEG, JPEG, Raw
-* Ventana / Roche BIF (.bif)
-* Hamamatsu (.vms, .ndpi, .dcm) with JPEG, JPEG2000
-* Huron Technologies (.tif)
-* 3DHistech (.mrxs) with JPEG, PNG, BMP
-* Aperio / Leica (.svs, .cws, .scn, .lif, DICOMDIR) with JPEG, JPEG2000
-* Carl Zeiss (.zvi, .czi, .lsm) with Raw, PNG, JPEG, LZW, Deflate, JPEG2000
-* Open Microscopy Environment OME-TIFF (.tf2, .tf8, .btf, .ome.tif)
-* Nikon (.nd2, .tiff) with Deflate, JPEG, JPEG2000, LZW, Deflate, Raw, RLE
-* Philips (.tif) with JPEG, JPEG2000, LZW, Deflate, Raw, RLE
-* Sakura (.svslide) with JPEG(sqlite2, sqlite3, mssql)
-* Menarini (.ini) with Raw
-* Motic (.mds)
-* Zoomify (.zif) with JPEG, JPEG2000, LZW, Deflate, Raw, RLE
-* SmartZoom	(.szi) with JPEG, BMP
-* Objective Imaging / Glissano (.sws)
-* Perkin Elmer (.qptiff)
-The most up to date list with supported file formats can be found at
-http://free.pathomation.com/formats