plotfig 0.0.7__tar.gz → 0.2.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (85) hide show
  1. {plotfig-0.0.7 → plotfig-0.2.1}/PKG-INFO +1 -2
  2. {plotfig-0.0.7 → plotfig-0.2.1}/plotfig.egg-info/PKG-INFO +1 -2
  3. {plotfig-0.0.7 → plotfig-0.2.1}/plotfig.egg-info/SOURCES.txt +9 -4
  4. {plotfig-0.0.7 → plotfig-0.2.1}/plotfig.egg-info/requires.txt +0 -1
  5. {plotfig-0.0.7 → plotfig-0.2.1}/pyproject.toml +53 -46
  6. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/__init__.py +7 -9
  7. plotfig-0.2.1/src/plotfig/bar.py +603 -0
  8. plotfig-0.0.7/src/plotfig/brain_connection_plot.py → plotfig-0.2.1/src/plotfig/brain_connection.py +14 -12
  9. plotfig-0.0.7/src/plotfig/brain_surface_plot.py → plotfig-0.2.1/src/plotfig/brain_surface.py +23 -1
  10. plotfig-0.2.1/src/plotfig/circos.py +286 -0
  11. plotfig-0.2.1/src/plotfig/correlation.py +198 -0
  12. plotfig-0.2.1/src/plotfig/data/atlas_tables/macaque_d99.csv +299 -0
  13. plotfig-0.2.1/src/plotfig/data/neurodata/atlases/macaque_D99/L.d99.label.gii +357 -0
  14. plotfig-0.2.1/src/plotfig/data/neurodata/atlases/macaque_D99/R.d99.label.gii +357 -0
  15. plotfig-0.2.1/src/plotfig/matrix.py +114 -0
  16. plotfig-0.0.7/src/plotfig/circos_plot.py +0 -208
  17. plotfig-0.0.7/src/plotfig/common_plot.py +0 -784
  18. {plotfig-0.0.7 → plotfig-0.2.1}/LICENSE +0 -0
  19. {plotfig-0.0.7 → plotfig-0.2.1}/README.md +0 -0
  20. {plotfig-0.0.7 → plotfig-0.2.1}/plotfig.egg-info/dependency_links.txt +0 -0
  21. {plotfig-0.0.7 → plotfig-0.2.1}/plotfig.egg-info/top_level.txt +0 -0
  22. {plotfig-0.0.7 → plotfig-0.2.1}/setup.cfg +0 -0
  23. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/atlas_tables/chimpanzee_bna.csv +0 -0
  24. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/atlas_tables/human_bna.csv +0 -0
  25. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/atlas_tables/human_glasser.csv +0 -0
  26. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/atlas_tables/macaque_bna.csv +0 -0
  27. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/atlas_tables/macaque_charm5.csv +0 -0
  28. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/atlas_tables/macaque_charm5_add_13_sgms.csv +0 -0
  29. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/atlas_tables/macaque_charm6.csv +0 -0
  30. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/atlases/chimpanzee_BNA/ChimpBNA.L.32k_fs_LR.label.gii +0 -0
  31. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/atlases/chimpanzee_BNA/ChimpBNA.R.32k_fs_LR.label.gii +0 -0
  32. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/atlases/human_BNA/fsaverage.L.BNA.32k_fs_LR.label.gii +0 -0
  33. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/atlases/human_BNA/fsaverage.R.BNA.32k_fs_LR.label.gii +0 -0
  34. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/atlases/human_Glasser/fsaverage.L.Glasser.32k_fs_LR.label.gii +0 -0
  35. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/atlases/human_Glasser/fsaverage.R.Glasser.32k_fs_LR.label.gii +0 -0
  36. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/atlases/macaque_BNA/MBNA_124_32k_L.label.gii +0 -0
  37. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/atlases/macaque_BNA/MBNA_124_32k_R.label.gii +0 -0
  38. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/atlases/macaque_CHARM5/L.charm5.label.gii +0 -0
  39. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/atlases/macaque_CHARM5/R.charm5.label.gii +0 -0
  40. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/atlases/macaque_CHARM6/L.charm6.label.gii +0 -0
  41. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/atlases/macaque_CHARM6/R.charm6.label.gii +0 -0
  42. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/chimpanzee_BNA/ChimpYerkes29_v1.2.L.midthickness.32k_fs_LR.surf.gii +0 -0
  43. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/chimpanzee_BNA/ChimpYerkes29_v1.2.L.veryinflated.32k_fs_LR.surf.gii +0 -0
  44. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/chimpanzee_BNA/ChimpYerkes29_v1.2.R.midthickness.32k_fs_LR.surf.gii +0 -0
  45. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/chimpanzee_BNA/ChimpYerkes29_v1.2.R.veryinflated.32k_fs_LR.surf.gii +0 -0
  46. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/README.md +0 -0
  47. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-L_desc-nomedialwall_dparc.label.gii +0 -0
  48. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-L_desc-sulc_midthickness.shape.gii +0 -0
  49. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-L_desc-vaavg_midthickness.shape.gii +0 -0
  50. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-L_inflated.surf.gii +0 -0
  51. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-L_midthickness.surf.gii +0 -0
  52. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-L_sphere.surf.gii +0 -0
  53. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-L_veryinflated.surf.gii +0 -0
  54. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-R_desc-nomedialwall_dparc.label.gii +0 -0
  55. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-R_desc-sulc_midthickness.shape.gii +0 -0
  56. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-R_desc-vaavg_midthickness.shape.gii +0 -0
  57. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-R_inflated.surf.gii +0 -0
  58. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-R_midthickness.surf.gii +0 -0
  59. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-R_sphere.surf.gii +0 -0
  60. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_den-32k_hemi-R_veryinflated.surf.gii +0 -0
  61. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_space-fsaverage_den-32k_hemi-L_sphere.surf.gii +0 -0
  62. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/human_fsLR/tpl-fsLR_space-fsaverage_den-32k_hemi-R_sphere.surf.gii +0 -0
  63. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_BNA/civm.L.inflated.32k_fs_LR.surf.gii +0 -0
  64. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_BNA/civm.L.midthickness.32k_fs_LR.surf.gii +0 -0
  65. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_BNA/civm.L.pial.32k_fs_LR.surf.gii +0 -0
  66. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_BNA/civm.L.veryinflated.32k_fs_LR.surf.gii +0 -0
  67. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_BNA/civm.L.white.32k_fs_LR.surf.gii +0 -0
  68. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_BNA/civm.R.inflated.32k_fs_LR.surf.gii +0 -0
  69. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_BNA/civm.R.midthickness.32k_fs_LR.surf.gii +0 -0
  70. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_BNA/civm.R.pial.32k_fs_LR.surf.gii +0 -0
  71. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_BNA/civm.R.veryinflated.32k_fs_LR.surf.gii +0 -0
  72. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_BNA/civm.R.white.32k_fs_LR.surf.gii +0 -0
  73. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_NMT2/L.gray_surface.inf_300.surf.gii +0 -0
  74. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_NMT2/L.gray_surface.surf.gii +0 -0
  75. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_NMT2/L.mid_surface.inf_300.surf.gii +0 -0
  76. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_NMT2/L.mid_surface.surf.gii +0 -0
  77. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_NMT2/L.white_surface.inf_300.surf.gii +0 -0
  78. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_NMT2/L.white_surface.surf.gii +0 -0
  79. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_NMT2/R.gray_surface.inf_300.surf.gii +0 -0
  80. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_NMT2/R.gray_surface.surf.gii +0 -0
  81. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_NMT2/R.mid_surface.inf_300.surf.gii +0 -0
  82. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_NMT2/R.mid_surface.surf.gii +0 -0
  83. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_NMT2/R.white_surface.inf_300.surf.gii +0 -0
  84. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/surfaces/macaque_NMT2/R.white_surface.surf.gii +0 -0
  85. {plotfig-0.0.7 → plotfig-0.2.1}/src/plotfig/data/neurodata/volumes/macaque_NMT2/CHARM5_add_13_sgms_asym.nii.gz +0 -0
@@ -1,13 +1,12 @@
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  Metadata-Version: 2.4
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  Name: plotfig
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- Version: 0.0.7
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+ Version: 0.2.1
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  Summary: Scientific plotting package for Cognitive neuroscience
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  Author-email: Ricardo Ryn <ricardoRyn1317@gmail.com>
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  Keywords: neuroscience,plotting,visualization
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  Requires-Python: >=3.11
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: ipykernel>=6.29.5
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  Requires-Dist: matplotlib>=3.10.1
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  Requires-Dist: mne-connectivity>=0.7.0
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  Requires-Dist: nibabel>=5.3.2
@@ -1,13 +1,12 @@
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  Metadata-Version: 2.4
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  Name: plotfig
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- Version: 0.0.7
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+ Version: 0.2.1
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  Summary: Scientific plotting package for Cognitive neuroscience
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  Author-email: Ricardo Ryn <ricardoRyn1317@gmail.com>
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  Keywords: neuroscience,plotting,visualization
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  Requires-Python: >=3.11
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: ipykernel>=6.29.5
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  Requires-Dist: matplotlib>=3.10.1
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  Requires-Dist: mne-connectivity>=0.7.0
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  Requires-Dist: nibabel>=5.3.2
@@ -7,10 +7,12 @@ plotfig.egg-info/dependency_links.txt
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  plotfig.egg-info/requires.txt
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  plotfig.egg-info/top_level.txt
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  src/plotfig/__init__.py
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- src/plotfig/brain_connection_plot.py
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- src/plotfig/brain_surface_plot.py
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- src/plotfig/circos_plot.py
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- src/plotfig/common_plot.py
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+ src/plotfig/bar.py
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+ src/plotfig/brain_connection.py
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+ src/plotfig/brain_surface.py
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+ src/plotfig/circos.py
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+ src/plotfig/correlation.py
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+ src/plotfig/matrix.py
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  src/plotfig/data/atlas_tables/chimpanzee_bna.csv
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  src/plotfig/data/atlas_tables/human_bna.csv
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  src/plotfig/data/atlas_tables/human_glasser.csv
@@ -18,6 +20,7 @@ src/plotfig/data/atlas_tables/macaque_bna.csv
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  src/plotfig/data/atlas_tables/macaque_charm5.csv
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  src/plotfig/data/atlas_tables/macaque_charm5_add_13_sgms.csv
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  src/plotfig/data/atlas_tables/macaque_charm6.csv
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+ src/plotfig/data/atlas_tables/macaque_d99.csv
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  src/plotfig/data/neurodata/atlases/chimpanzee_BNA/ChimpBNA.L.32k_fs_LR.label.gii
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  src/plotfig/data/neurodata/atlases/chimpanzee_BNA/ChimpBNA.R.32k_fs_LR.label.gii
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  src/plotfig/data/neurodata/atlases/human_BNA/fsaverage.L.BNA.32k_fs_LR.label.gii
@@ -30,6 +33,8 @@ src/plotfig/data/neurodata/atlases/macaque_CHARM5/L.charm5.label.gii
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  src/plotfig/data/neurodata/atlases/macaque_CHARM5/R.charm5.label.gii
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  src/plotfig/data/neurodata/atlases/macaque_CHARM6/L.charm6.label.gii
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  src/plotfig/data/neurodata/atlases/macaque_CHARM6/R.charm6.label.gii
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+ src/plotfig/data/neurodata/atlases/macaque_D99/L.d99.label.gii
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+ src/plotfig/data/neurodata/atlases/macaque_D99/R.d99.label.gii
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  src/plotfig/data/neurodata/surfaces/chimpanzee_BNA/ChimpYerkes29_v1.2.L.midthickness.32k_fs_LR.surf.gii
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  src/plotfig/data/neurodata/surfaces/chimpanzee_BNA/ChimpYerkes29_v1.2.L.veryinflated.32k_fs_LR.surf.gii
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  src/plotfig/data/neurodata/surfaces/chimpanzee_BNA/ChimpYerkes29_v1.2.R.midthickness.32k_fs_LR.surf.gii
@@ -1,4 +1,3 @@
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- ipykernel>=6.29.5
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  matplotlib>=3.10.1
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  mne-connectivity>=0.7.0
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  nibabel>=5.3.2
@@ -1,46 +1,53 @@
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- [project]
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- name = "plotfig"
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- version = "0.0.7"
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- description = "Scientific plotting package for Cognitive neuroscience"
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- keywords = ["neuroscience", "plotting", "visualization"]
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- readme = "README.md"
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- requires-python = ">=3.11"
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- authors = [
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- { name = "Ricardo Ryn", email = "ricardoRyn1317@gmail.com" }
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- ]
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- dependencies = [
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- "ipykernel>=6.29.5",
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- "matplotlib>=3.10.1",
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- "mne-connectivity>=0.7.0",
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- "nibabel>=5.3.2",
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- "numpy>=2.2.4",
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- "pandas>=2.2.3",
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- "plotly>=6.0.1",
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- "scipy>=1.15.2",
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- "surfplot>=0.2.0",
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- ]
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-
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- [dependency-groups]
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- dev = [
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- "joblib>=1.4.2",
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- ]
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-
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- [build-system]
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- requires = ["setuptools>=42", "wheel"]
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- build-backend = "setuptools.build_meta"
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-
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- [tool.setuptools]
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- package-dir = {"plotfig" = "src/plotfig"}
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- packages = ["plotfig"]
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- include-package-data = true
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-
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- [tool.setuptools.package-data]
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- plotfig = [
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- "data/atlas_tables/**/*",
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- "data/neurodata/**/*"
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- ]
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-
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- [tool.ruff]
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- exclude = [
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- "examples/example.ipynb"
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- ]
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+ [project]
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+ name = "plotfig"
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+ version = "0.2.1"
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+ description = "Scientific plotting package for Cognitive neuroscience"
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+ keywords = ["neuroscience", "plotting", "visualization"]
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+ readme = "README.md"
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+ requires-python = ">=3.11"
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+ authors = [
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+ { name = "Ricardo Ryn", email = "ricardoRyn1317@gmail.com" }
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+ ]
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+ dependencies = [
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+ "matplotlib>=3.10.1",
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+ "mne-connectivity>=0.7.0",
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+ "nibabel>=5.3.2",
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+ "numpy>=2.2.4",
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+ "pandas>=2.2.3",
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+ "plotly>=6.0.1",
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+ "scipy>=1.15.2",
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+ "surfplot>=0.2.0",
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+ ]
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+
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+ [dependency-groups]
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+ dev = [
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+ "joblib>=1.4.2",
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+ ]
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+
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+ [build-system]
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+ requires = ["setuptools>=42", "wheel"]
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+ build-backend = "setuptools.build_meta"
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+
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+ [tool.setuptools]
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+ package-dir = {"plotfig" = "src/plotfig"}
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+ packages = ["plotfig"]
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+ include-package-data = true
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+
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+ [tool.setuptools.package-data]
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+ plotfig = [
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+ "data/atlas_tables/**/*",
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+ "data/neurodata/**/*"
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+ ]
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+
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+ [tool.ruff]
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+ exclude = [
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+ "examples/example.ipynb"
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+ ]
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+
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+ [tool.commitizen]
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+ name = "cz_conventional_commits"
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+ tag_format = "v$version"
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+ version_scheme = "pep440"
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+ version_provider = "pep621"
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+ update_changelog_on_bump = true
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+ major_version_zero = true
@@ -1,10 +1,8 @@
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- from .common_plot import (
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- plot_one_group_bar_figure,
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- plot_one_group_violin_figure,
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- plot_correlation_figure,
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- plot_matrix_figure,
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- )
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- from .brain_surface_plot import (
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+ from .bar import (plot_one_group_bar_figure, plot_one_group_violin_figure, plot_multi_group_bar_figure)
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+ from .correlation import plot_correlation_figure
3
+ from .matrix import plot_matrix_figure
4
+ from .circos import plot_symmetric_circle_figure, plot_asymmetric_circle_figure
5
+ from .brain_surface import (
8
6
  plot_human_brain_figure,
9
7
  plot_human_hemi_brain_figure,
10
8
  plot_macaque_brain_figure,
@@ -12,12 +10,12 @@ from .brain_surface_plot import (
12
10
  plot_chimpanzee_brain_figure,
13
11
  plot_chimpanzee_hemi_brain_figure,
14
12
  )
15
- from .circos_plot import plot_symmetric_circle_figure, plot_asymmetric_circle_figure
16
- from .brain_connection_plot import plot_brain_connection_figure
13
+ from .brain_connection import plot_brain_connection_figure
17
14
 
18
15
  __all__ = [
19
16
  "plot_one_group_bar_figure",
20
17
  "plot_one_group_violin_figure",
18
+ "plot_multi_group_bar_figure",
21
19
  "plot_correlation_figure",
22
20
  "plot_matrix_figure",
23
21
  "plot_human_brain_figure",