plot-misc 2.0.2__tar.gz

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  1. plot_misc-2.0.2/LICENSE +18 -0
  2. plot_misc-2.0.2/PKG-INFO +107 -0
  3. plot_misc-2.0.2/README.md +79 -0
  4. plot_misc-2.0.2/plot_misc/__init__.py +1 -0
  5. plot_misc-2.0.2/plot_misc/_version.py +1 -0
  6. plot_misc-2.0.2/plot_misc/barchart.py +523 -0
  7. plot_misc-2.0.2/plot_misc/constants.py +118 -0
  8. plot_misc-2.0.2/plot_misc/errors.py +328 -0
  9. plot_misc-2.0.2/plot_misc/example_data/__init__.py +1 -0
  10. plot_misc-2.0.2/plot_misc/example_data/example_datasets/bar_points.tsv.gz +0 -0
  11. plot_misc-2.0.2/plot_misc/example_data/example_datasets/barchart.tsv.gz +0 -0
  12. plot_misc-2.0.2/plot_misc/example_data/example_datasets/calibration_bins.tsv.gz +0 -0
  13. plot_misc-2.0.2/plot_misc/example_data/example_datasets/calibration_data.tsv.gz +0 -0
  14. plot_misc-2.0.2/plot_misc/example_data/example_datasets/forest_data.tsv.gz +0 -0
  15. plot_misc-2.0.2/plot_misc/example_data/example_datasets/group_bar.tsv.gz +0 -0
  16. plot_misc-2.0.2/plot_misc/example_data/example_datasets/heatmap_data.tsv.gz +0 -0
  17. plot_misc-2.0.2/plot_misc/example_data/example_datasets/incidence_matrix_data.tsv.gz +0 -0
  18. plot_misc-2.0.2/plot_misc/example_data/example_datasets/lollipop_data.tsv.gz +0 -0
  19. plot_misc-2.0.2/plot_misc/example_data/example_datasets/mace_associations.tsv.gz +0 -0
  20. plot_misc-2.0.2/plot_misc/example_data/example_datasets/net_benefit.tsv.gz +0 -0
  21. plot_misc-2.0.2/plot_misc/example_data/example_datasets/string_data.txt +1 -0
  22. plot_misc-2.0.2/plot_misc/example_data/example_datasets/volcano.tsv.gz +0 -0
  23. plot_misc-2.0.2/plot_misc/example_data/examples.py +637 -0
  24. plot_misc-2.0.2/plot_misc/forest.py +1478 -0
  25. plot_misc-2.0.2/plot_misc/heatmap.py +369 -0
  26. plot_misc-2.0.2/plot_misc/incidencematrix.py +394 -0
  27. plot_misc-2.0.2/plot_misc/machine_learning.py +1143 -0
  28. plot_misc-2.0.2/plot_misc/piechart.py +197 -0
  29. plot_misc-2.0.2/plot_misc/utils/__init__.py +1 -0
  30. plot_misc-2.0.2/plot_misc/utils/colour.py +171 -0
  31. plot_misc-2.0.2/plot_misc/utils/formatting.py +369 -0
  32. plot_misc-2.0.2/plot_misc/utils/utils.py +1151 -0
  33. plot_misc-2.0.2/plot_misc/volcano.py +203 -0
  34. plot_misc-2.0.2/plot_misc.egg-info/PKG-INFO +107 -0
  35. plot_misc-2.0.2/plot_misc.egg-info/SOURCES.txt +38 -0
  36. plot_misc-2.0.2/plot_misc.egg-info/dependency_links.txt +1 -0
  37. plot_misc-2.0.2/plot_misc.egg-info/requires.txt +11 -0
  38. plot_misc-2.0.2/plot_misc.egg-info/top_level.txt +1 -0
  39. plot_misc-2.0.2/pyproject.toml +55 -0
  40. plot_misc-2.0.2/setup.cfg +4 -0
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+ GNU GENERAL PUBLIC LICENSE
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+ Version 3, 29 June 2007
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+
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+ Copyright (C) 2024 Amand Floriaan Schmidt (amand.schmidt@ucl.ac.uk)
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+
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+ This program is free software: you can redistribute it and/or modify
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+ it under the terms of the GNU General Public License as published by
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+ the Free Software Foundation, either version 3 of the License, or
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+ (at your option) any later version.
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+
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+ This program is distributed in the hope that it will be useful,
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+ but WITHOUT ANY WARRANTY; without even the implied warranty of
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+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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+ GNU General Public License for more details.
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+
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+ You should have received a copy of the GNU General Public License
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+ along with this program. If not, see <https://www.gnu.org/licenses/>.
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+
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+ Metadata-Version: 2.4
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+ Name: plot-misc
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+ Version: 2.0.2
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+ Summary: Various plotting templates built on top of matplotlib
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+ Author-email: A Floriaan Schmidt <floriaanschmidt@gmail.com>
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+ License-Expression: GPL-3.0-or-later
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+ Project-URL: Homepage, https://gitlab.com/SchmidtAF/plot-misc
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+ Classifier: Programming Language :: Python
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Programming Language :: Python :: 3.11
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+ Classifier: Programming Language :: Python :: 3.12
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+ Classifier: Programming Language :: Python :: Implementation :: PyPy
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+ Requires-Python: <3.13,>=3.10
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Requires-Dist: numpy
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+ Requires-Dist: pandas
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+ Requires-Dist: matplotlib
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+ Requires-Dist: seaborn
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+ Requires-Dist: scipy
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+ Requires-Dist: scikit-learn
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+ Requires-Dist: adjustText
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+ Provides-Extra: dev
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+ Requires-Dist: twine; extra == "dev"
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+ Requires-Dist: build; extra == "dev"
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+ Dynamic: license-file
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+
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+ # A collection of plotting functions
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+ __version__: `2.0.2`
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+
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+
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+ This repository collects plotting modules written on top of `matplotlib` or
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+ `seaborn`.
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+ The functions are intended to set-up a light-touch basic illustration which
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+ can be customised using the normal matplotlib interface using axes and figures.
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+
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+
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+ The documentation for plot-misc can be found [here](https://SchmidtAF.gitlab.io/plot-misc/).
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+
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+
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+ ## Installation
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+ At present, this package is undergoing development and no packages exist yet on PyPI.
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+ Therefore it is recommended that you install in either of the two ways below.
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+
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+ ### Installation using conda
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+ I maintain a conda package in my personal conda channel. To install from this please run:
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+
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+ ```
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+ conda install afschmidt::plot_misc
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+ ```
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+
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+ ### Installation using pip
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+
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+ You can install using pip from the root of the cloned repository,
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+ first clone and cd into the repository root:
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+
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+ ```sh
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+ git clone git@gitlab.com:SchmidtAF/plot-misc.git
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+ cd plot-misc
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+ ```
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+
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+ Install the dependencies:
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+
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+ ```sh
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+ # From the root of the repository
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+ conda env create --file ./resources/conda/envs/conda_create.yaml
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+ ```
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+
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+ To add to an existing environment use:
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+
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+ ```sh
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+ # From the root of the repository
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+ conda env update --file ./resources/conda/envs/conda_update.yaml
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+ ```
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+
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+ Next the package can be installed:
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+
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+ ```sh
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+ python -m pip install .
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+ ```
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+
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+ Or for an editable (developer) install run the command below from the root of
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+ the repository.
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+ The difference with this is that you can just run `git pull` to
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+ update repository, or switch branches without re-installing:
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+
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+ ```sh
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+ python -m pip install -e .
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+
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+ ```
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+
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+ ## Next steps...
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+ After installation you might wish to try the `pytest` to confirm
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+ everything is in working order.
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+
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+ ```sh
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+ # From the root of the repository
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+ pytest tests
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+ ```
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+
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+ ## Usage
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+
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+ Please have a look at the examples in
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+ [resources](https://gitlab.com/SchmidtAF/plot-misc/-/tree/master/resources/examples)
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+ for some possible recipes.
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+
@@ -0,0 +1,79 @@
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+ # A collection of plotting functions
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+ __version__: `2.0.2`
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+
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+
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+ This repository collects plotting modules written on top of `matplotlib` or
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+ `seaborn`.
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+ The functions are intended to set-up a light-touch basic illustration which
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+ can be customised using the normal matplotlib interface using axes and figures.
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+
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+
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+ The documentation for plot-misc can be found [here](https://SchmidtAF.gitlab.io/plot-misc/).
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+
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+
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+ ## Installation
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+ At present, this package is undergoing development and no packages exist yet on PyPI.
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+ Therefore it is recommended that you install in either of the two ways below.
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+
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+ ### Installation using conda
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+ I maintain a conda package in my personal conda channel. To install from this please run:
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+
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+ ```
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+ conda install afschmidt::plot_misc
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+ ```
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+
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+ ### Installation using pip
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+
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+ You can install using pip from the root of the cloned repository,
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+ first clone and cd into the repository root:
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+
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+ ```sh
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+ git clone git@gitlab.com:SchmidtAF/plot-misc.git
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+ cd plot-misc
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+ ```
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+
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+ Install the dependencies:
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+
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+ ```sh
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+ # From the root of the repository
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+ conda env create --file ./resources/conda/envs/conda_create.yaml
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+ ```
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+
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+ To add to an existing environment use:
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+
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+ ```sh
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+ # From the root of the repository
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+ conda env update --file ./resources/conda/envs/conda_update.yaml
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+ ```
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+
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+ Next the package can be installed:
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+
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+ ```sh
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+ python -m pip install .
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+ ```
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+
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+ Or for an editable (developer) install run the command below from the root of
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+ the repository.
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+ The difference with this is that you can just run `git pull` to
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+ update repository, or switch branches without re-installing:
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+
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+ ```sh
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+ python -m pip install -e .
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+
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+ ```
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+
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+ ## Next steps...
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+ After installation you might wish to try the `pytest` to confirm
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+ everything is in working order.
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+
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+ ```sh
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+ # From the root of the repository
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+ pytest tests
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+ ```
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+
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+ ## Usage
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+
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+ Please have a look at the examples in
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+ [resources](https://gitlab.com/SchmidtAF/plot-misc/-/tree/master/resources/examples)
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+ for some possible recipes.
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+
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+ from ._version import __version__
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+ __version__ = '2.0.2'