plexus-python-pulse-demeter 1.1.127__tar.gz → 1.1.129__tar.gz

plexus_python_pulse_demeter-1.1.129/.dockerignore

@@ -0,0 +1,180 @@
+# OS scratch
+.DS_Store
+Thumbs.db
+*.[oa]
+*~
+
+# Git
+.git/
+
+# General scratch files and compiled output
+target/
+output/
+out/
+build/
+opt/
+gen/
+tmp/
+temp/
+
+# IDEs
+*.iml
+.idea/
+.classpath
+.project
+.settings/
+.vscode/
+
+
+# Python byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Python distribution / packaging
+.Python
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+*.egg
+.installed.cfg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+#.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/

{plexus_python_pulse_demeter-1.1.127 → plexus_python_pulse_demeter-1.1.129}/.editorconfig

@@ -1,13 +1,48 @@
 root = true
 
-[*.py]
+[*]
 charset = utf-8
 end_of_line = lf
-insert_final_newline = true
-trim_trailing_whitespace = true
-indent_style = space
 indent_size = 4
+indent_style = space
+insert_final_newline = false
+max_line_length = 120
+tab_width = 4
+ij_formatter_tags_enabled = true
+ij_formatter_off_tag = @formatter:off
+ij_formatter_on_tag = @formatter:on
+
+[{*.bash,*.sh,*.zsh}]
+indent_size = 2
+tab_width = 2
+ij_shell_binary_ops_start_line = false
+ij_shell_keep_column_alignment_padding = false
+ij_shell_minify_program = false
+ij_shell_redirect_followed_by_space = false
+ij_shell_switch_cases_indented = false
+ij_shell_use_unix_line_separator = true
 
+[{*.markdown,*.md}]
+ij_markdown_force_one_space_after_blockquote_symbol = true
+ij_markdown_force_one_space_after_header_symbol = true
+ij_markdown_force_one_space_after_list_bullet = true
+ij_markdown_force_one_space_between_words = true
+ij_markdown_format_tables = true
+ij_markdown_insert_quote_arrows_on_wrap = true
+ij_markdown_keep_indents_on_empty_lines = false
+ij_markdown_keep_line_breaks_inside_text_blocks = true
+ij_markdown_max_lines_around_block_elements = 1
+ij_markdown_max_lines_around_header = 1
+ij_markdown_max_lines_between_paragraphs = 1
+ij_markdown_min_lines_around_block_elements = 1
+ij_markdown_min_lines_around_header = 1
+ij_markdown_min_lines_between_paragraphs = 1
+ij_markdown_wrap_text_if_long = true
+ij_markdown_wrap_text_inside_blockquotes = true
+
+[*.py]
+insert_final_newline = true
+trim_trailing_whitespace = true
 ij_python_align_collections_and_comprehensions = true
 ij_python_align_multiline_imports = true
 ij_python_align_multiline_parameters = true
@@ -21,16 +56,16 @@ ij_python_blank_lines_around_top_level_classes_functions = 2
 ij_python_blank_lines_before_first_method = 0
 ij_python_call_parameters_new_line_after_left_paren = false
 ij_python_call_parameters_right_paren_on_new_line = false
-ij_python_call_parameters_wrap = normal
+ij_python_call_parameters_wrap = on_every_item
 ij_python_dict_alignment = 0
 ij_python_dict_new_line_after_left_brace = false
 ij_python_dict_new_line_before_right_brace = false
-ij_python_dict_wrapping = 1
-ij_python_from_import_new_line_after_left_parenthesis = false
-ij_python_from_import_new_line_before_right_parenthesis = false
-ij_python_from_import_parentheses_force_if_multiline = false
-ij_python_from_import_trailing_comma_if_multiline = false
-ij_python_from_import_wrapping = 1
+ij_python_dict_wrapping = on_every_item
+ij_python_from_import_new_line_after_left_parenthesis = true
+ij_python_from_import_new_line_before_right_parenthesis = true
+ij_python_from_import_parentheses_force_if_multiline = true
+ij_python_from_import_trailing_comma_if_multiline = true
+ij_python_from_import_wrapping = on_every_item
 ij_python_hang_closing_brackets = false
 ij_python_keep_blank_lines_in_code = 1
 ij_python_keep_blank_lines_in_declarations = 1
@@ -38,7 +73,7 @@ ij_python_keep_indents_on_empty_lines = false
 ij_python_keep_line_breaks = true
 ij_python_method_parameters_new_line_after_left_paren = false
 ij_python_method_parameters_right_paren_on_new_line = false
-ij_python_method_parameters_wrap = normal
+ij_python_method_parameters_wrap = on_every_item
 ij_python_new_line_after_colon = false
 ij_python_new_line_after_colon_multi_clause = true
 ij_python_optimize_imports_always_split_from_imports = false
@@ -78,3 +113,33 @@ ij_python_use_continuation_indent_for_arguments = false
 ij_python_use_continuation_indent_for_collection_and_comprehensions = false
 ij_python_use_continuation_indent_for_parameters = false
 ij_python_wrap_long_lines = false
+
+[*.json]
+indent_size = 2
+ij_json_array_wrapping = split_into_lines
+ij_json_keep_blank_lines_in_code = 0
+ij_json_keep_indents_on_empty_lines = false
+ij_json_keep_line_breaks = true
+ij_json_keep_trailing_comma = false
+ij_json_object_wrapping = split_into_lines
+ij_json_property_alignment = do_not_align
+ij_json_space_after_colon = true
+ij_json_space_after_comma = true
+ij_json_space_before_colon = false
+ij_json_space_before_comma = false
+ij_json_spaces_within_braces = false
+ij_json_spaces_within_brackets = false
+ij_json_wrap_long_lines = false
+
+[{*.yaml,*.yml}]
+indent_size = 2
+ij_yaml_align_values_properties = do_not_align
+ij_yaml_autoinsert_sequence_marker = true
+ij_yaml_block_mapping_on_new_line = false
+ij_yaml_indent_sequence_value = true
+ij_yaml_keep_indents_on_empty_lines = false
+ij_yaml_keep_line_breaks = true
+ij_yaml_sequence_on_new_line = false
+ij_yaml_space_before_colon = false
+ij_yaml_spaces_within_braces = true
+ij_yaml_spaces_within_brackets = true

{plexus_python_pulse_demeter-1.1.127 → plexus_python_pulse_demeter-1.1.129}/.gitignore

@@ -1,15 +1,16 @@
-# System junks
-*.[oa]
-*~
+# OS scratch
 .DS_Store
 Thumbs.db
+*.[oa]
+*~
 
 # Git
 .git/
 
-# General
+# General scratch files and compiled output
 target/
 output/
+out/
 build/
 opt/
 gen/
@@ -25,7 +26,7 @@ temp/
 .vscode/
 
 
-# Byte-compiled / optimized / DLL files
+# Python byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]
 *$py.class
@@ -33,9 +34,8 @@ __pycache__/
 # C extensions
 *.so
 
-# Distribution / packaging
+# Python distribution / packaging
 .Python
-build/
 develop-eggs/
 dist/
 downloads/
@@ -49,8 +49,8 @@ var/
 wheels/
 share/python-wheels/
 *.egg-info/
-.installed.cfg
 *.egg
+.installed.cfg
 MANIFEST
 
 # PyInstaller
@@ -112,7 +112,7 @@ ipython_config.py
 # pyenv
 #   For a library or package, you might want to ignore these files since the code is
 #   intended to run in multiple environments; otherwise, check them in:
-# .python-version
+#.python-version
 
 # pipenv
 #   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
@@ -178,10 +178,3 @@ dmypy.json
 
 # Cython debug symbols
 cython_debug/
-
-# PyCharm
-#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
-#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
-#  and can be added to the global gitignore or merged into this file.  For a more nuclear
-#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
-#.idea/

{plexus_python_pulse_demeter-1.1.127 → plexus_python_pulse_demeter-1.1.129}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: plexus-python-pulse-demeter
-Version: 1.1.127
+Version: 1.1.129
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13

{plexus_python_pulse_demeter-1.1.127 → plexus_python_pulse_demeter-1.1.129}/src/plexus/pulse/demeter/app/api/dataset_public_endpoints.py

@@ -1667,7 +1667,7 @@ class MetricsDisplayOperation(object):
 @singleton
 def registered_metrics_display_operations() -> dict[str, MetricsDisplayOperation]:
     """
-    Register metrics display operations for different benchmarks.
+    Register metrics display operations by benchmark name.
 
     Example:
 
@@ -1743,7 +1743,7 @@ def registered_metrics_display_operations() -> dict[str, MetricsDisplayOperation
     ...     detailed_metric_pivot_tables_maker,
     ... )
 
-    :return: A dictionary mapping benchmark names to their corresponding ``MetricsOperation``.
+    :return: Dictionary mapping benchmark names to their corresponding ``MetricsDisplayOperation``.
     """
     return {}
 

{plexus_python_pulse_demeter-1.1.127 → plexus_python_pulse_demeter-1.1.129}/src/plexus/pulse/demeter/app/api/tagging_endpoints.py

@@ -118,7 +118,7 @@ def tag_query_interpreter() -> Callable[[str], sa.ColumnElement[bool]]:
 
     def ast_to_sa_filter(ast: Expr) -> sa.ColumnElement[bool]:
         """
-        Converts the AST into an SQLAlchemy filter.
+        Convert the AST into an SQLAlchemy filter.
         """
         if isinstance(ast, TagQueryExpr):
             if ast.features_query is None:

{plexus_python_pulse_demeter-1.1.127 → plexus_python_pulse_demeter-1.1.129}/src/plexus/pulse/demeter/app/models/registry/__init__.py

@@ -20,9 +20,9 @@ class JobStatusFlag(enum.Flag):
     Comprehensive job status bitflags.
 
     Flags are grouped by functional categories with distinct bit ranges:
-    - progression: job lifecycle states (0x01 - 0x80)
-    - control: control/administrative requests (0x0100 - 0x8000)
-    - outcome: terminal outcomes (0x010000 - 0x800000)
+    - Progression: job lifecycle states (0x01 - 0x80).
+    - Control: control and administrative requests (0x0100 - 0x8000).
+    - Outcome: terminal states (0x010000 - 0x800000).
     """
     # Progression / lifecycle (ongoing states)
     Submitted = 0x01

{plexus_python_pulse_demeter-1.1.127 → plexus_python_pulse_demeter-1.1.129}/src/plexus/pulse/demeter/utils/datautils.py

@@ -57,11 +57,11 @@ def retrieve_dataset_metafile(
     dataset_path: Path | CloudPath,
 ) -> Result[DatasetMetafile | None, ValidationFailure]:
     """
-    Retrieve the dataset metafile for a given dataset path.
+    Retrieve the dataset metafile from a dataset root.
 
-    :param dataset_path: absolute path to the dataset root
+    :param dataset_path: Absolute path to the dataset root.
 
-    :return: Result containing optional ``DatasetMetafile``, or a ``ValidationFailure`` on error.
+    :return: Result containing an optional ``DatasetMetafile``, or a ``ValidationFailure`` on error.
     """
     dataset_metafile_path = dataset_path / dataset_metafile_filename()
 
@@ -83,12 +83,12 @@ def retrieve_sample_metafile_and_layout(
     layouts: list[SampleLayout],
 ) -> Result[tuple[SampleMetafile | None, SampleLayout | None], ValidationFailure]:
     """
-    Retrieve the sample metafile and corresponding layout for a given sample path.
+    Retrieve the sample metafile and its matching layout.
 
-    :param sample_path: absolute path to the sample root
-    :param layouts: list of available ``SampleLayout`` objects
+    :param sample_path: Absolute path to the sample root.
+    :param layouts: Available ``SampleLayout`` objects.
 
-    :return: Result containing optional tuple of ``SampleMetafile`` and ``SampleLayout``, or a ``ValidationFailure``
+    :return: Result containing an optional tuple of ``SampleMetafile`` and ``SampleLayout``, or a ``ValidationFailure``
              on error.
     """
     sample_metafile_path = sample_path / sample_metafile_filename()
@@ -132,13 +132,13 @@ def walk_standalone_sample(
     """
     Walk and validate a standalone sample against its layout.
 
-    :param dataset_path: absolute path to the dataset root
-    :param sample_path: absolute path to the sample root
-    :param layout: layout to validate against
-    :param layouts: list of available ``SampleLayout`` objects
-    :param ignore_metafile: whether to ignore the sample metafile during validation
+    :param dataset_path: Absolute path to the dataset root.
+    :param sample_path: Absolute path to the sample root.
+    :param layout: Layout to validate against.
+    :param layouts: Available ``SampleLayout`` objects.
+    :param ignore_metafile: Whether to ignore the sample metafile during validation.
 
-    :return: Iterator of Results containing ``StandaloneSample`` or ``ValidationFailure``
+    :return: Iterator of results containing ``StandaloneSample`` or ``ValidationFailure``.
     """
     if not dataset_path.is_absolute():
         raise ValueError(f"'{dataset_path}' is not an absolute path")
@@ -324,12 +324,12 @@ def validate_standalone_sample(
     """
     Validate a standalone sample against its layout.
 
-    :param dataset_root: absolute path to the dataset root
-    :param sample_root: absolute or relative path to the sample root
-    :param layout_reference: layout reference (name or UUID) to validate against
-    :param layouts: list of available ``SampleLayout`` objects
+    :param dataset_root: Absolute path to the dataset root.
+    :param sample_root: Absolute or relative path to the sample root.
+    :param layout_reference: Layout reference (name or UUID) to validate against.
+    :param layouts: Available ``SampleLayout`` objects.
 
-    :return: list of ``ValidationFailure`` objects encountered during validation
+    :return: List of ``ValidationFailure`` objects encountered during validation.
     """
     dataset_root_path = AnyPath(dataset_root)
     if not dataset_root_path.is_absolute():
@@ -367,11 +367,11 @@ def collect_standalone_dataset_samples(
     """
     Collect standalone samples from a dataset root.
 
-    :param dataset_root: absolute path to the dataset root
-    :param layouts: list of available ``SampleLayout`` objects
+    :param dataset_root: Absolute path to the dataset root.
+    :param layouts: Available ``SampleLayout`` objects.
 
-    :return: tuple containing optional ``StandaloneDataset``, list of ``StandaloneSample``, and list of
-             ``ValidationFailure`` objects
+    :return: Tuple containing an optional ``StandaloneDataset``, a list of ``StandaloneSample``, and a list of
+             ``ValidationFailure`` objects.
     """
     dataset_root_path = AnyPath(dataset_root)
     if not dataset_root_path.is_absolute():

{plexus_python_pulse_demeter-1.1.127 → plexus_python_pulse_demeter-1.1.129}/src/plexus_python_pulse_demeter.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: plexus-python-pulse-demeter
-Version: 1.1.127
+Version: 1.1.129
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13

{plexus_python_pulse_demeter-1.1.127 → plexus_python_pulse_demeter-1.1.129}/src/plexus_python_pulse_demeter.egg-info/SOURCES.txt

@@ -1,3 +1,4 @@
+.dockerignore
 .editorconfig
 .gitignore
 MANIFEST.in

{plexus_python_pulse_demeter-1.1.127 → plexus_python_pulse_demeter-1.1.129}/test/plexus_tests/pulse/demeter/app/api/dataset_public_endpoints_1_test.py

@@ -13,7 +13,7 @@ from plexus.pulse.demeter.app.api.dataset_public_endpoints import router as publ
 from plexus.pulse.demeter.app.api.dataset_workflow_endpoints import router as workflow_router
 from plexus.pulse.demeter.app.core.database import make_session
 from plexus.pulse.demeter.app.main import app
-from plexus.pulse.demeter.app.models.registry import JobStatusFlag as Flag, BaseModel
+from plexus.pulse.demeter.app.models.registry import BaseModel, JobStatusFlag as Flag
 
 fixture_postgresql_test_proc = pytest_postgresql.factories.postgresql_proc(host="localhost", user="postgres")
 fixture_postgresql_test = pytest_postgresql.factories.postgresql("fixture_postgresql_test_proc", dbname="pulse")

{plexus_python_pulse_demeter-1.1.127 → plexus_python_pulse_demeter-1.1.129}/test/plexus_tests/pulse/demeter/app/api/dataset_public_endpoints_2_test.py

@@ -23,7 +23,7 @@ from plexus.pulse.demeter.app.api.dataset_workflow_endpoints import router as wo
 from plexus.pulse.demeter.app.core.database import make_session
 from plexus.pulse.demeter.app.main import app
 from plexus.pulse.demeter.app.models import ColumnOrdering, TableColumn
-from plexus.pulse.demeter.app.models.registry import JobStatusFlag as Flag, BaseModel
+from plexus.pulse.demeter.app.models.registry import BaseModel, JobStatusFlag as Flag
 
 fixture_postgresql_test_proc = pytest_postgresql.factories.postgresql_proc(host="localhost", user="postgres")
 fixture_postgresql_test = pytest_postgresql.factories.postgresql("fixture_postgresql_test_proc", dbname="pulse")