plasmasds-fields 0.1.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- plasmasds_fields-0.1.0/.gitignore +218 -0
- plasmasds_fields-0.1.0/CHANGELOG.md +24 -0
- plasmasds_fields-0.1.0/LICENSE +504 -0
- plasmasds_fields-0.1.0/PKG-INFO +138 -0
- plasmasds_fields-0.1.0/README.md +110 -0
- plasmasds_fields-0.1.0/pyproject.toml +46 -0
- plasmasds_fields-0.1.0/src/plasmasds_fields/__init__.py +17 -0
- plasmasds_fields-0.1.0/src/plasmasds_fields/models/__init__.py +0 -0
- plasmasds_fields-0.1.0/src/plasmasds_fields/models/hesel.py +278 -0
- plasmasds_fields-0.1.0/src/plasmasds_fields/models/motion.py +359 -0
- plasmasds_fields-0.1.0/src/plasmasds_fields/models/profilegen.py +67 -0
- plasmasds_fields-0.1.0/src/plasmasds_fields/tools/__init__.py +0 -0
- plasmasds_fields-0.1.0/src/plasmasds_fields/tools/interpolate.py +209 -0
- plasmasds_fields-0.1.0/src/plasmasds_fields/tools/plot.py +777 -0
- plasmasds_fields-0.1.0/src/plasmasds_fields/w7x/__init__.py +0 -0
- plasmasds_fields-0.1.0/src/plasmasds_fields/w7x/fields.py +343 -0
- plasmasds_fields-0.1.0/src/plasmasds_fields/w7x/poincare.py +1055 -0
- plasmasds_fields-0.1.0/tests/__init__.py +0 -0
- plasmasds_fields-0.1.0/tests/helpers.py +62 -0
- plasmasds_fields-0.1.0/tests/test_datasets.py +43 -0
- plasmasds_fields-0.1.0/tests/test_fields.py +273 -0
- plasmasds_fields-0.1.0/tests/test_hesel.py +300 -0
- plasmasds_fields-0.1.0/tests/test_interpolate.py +119 -0
- plasmasds_fields-0.1.0/tests/test_motion.py +416 -0
- plasmasds_fields-0.1.0/tests/test_plot.py +150 -0
- plasmasds_fields-0.1.0/tests/test_poincare.py +676 -0
- plasmasds_fields-0.1.0/tests/test_profilegen.py +98 -0
|
@@ -0,0 +1,218 @@
|
|
|
1
|
+
# Byte-compiled / optimized / DLL files
|
|
2
|
+
__pycache__/
|
|
3
|
+
*.py[codz]
|
|
4
|
+
*$py.class
|
|
5
|
+
|
|
6
|
+
# C extensions
|
|
7
|
+
*.so
|
|
8
|
+
|
|
9
|
+
# Distribution / packaging
|
|
10
|
+
.Python
|
|
11
|
+
build/
|
|
12
|
+
develop-eggs/
|
|
13
|
+
dist/
|
|
14
|
+
downloads/
|
|
15
|
+
eggs/
|
|
16
|
+
.eggs/
|
|
17
|
+
lib/
|
|
18
|
+
lib64/
|
|
19
|
+
parts/
|
|
20
|
+
sdist/
|
|
21
|
+
var/
|
|
22
|
+
wheels/
|
|
23
|
+
share/python-wheels/
|
|
24
|
+
*.egg-info/
|
|
25
|
+
.installed.cfg
|
|
26
|
+
*.egg
|
|
27
|
+
MANIFEST
|
|
28
|
+
|
|
29
|
+
# PyInstaller
|
|
30
|
+
# Usually these files are written by a python script from a template
|
|
31
|
+
# before PyInstaller builds the exe, so as to inject date/other infos into it.
|
|
32
|
+
*.manifest
|
|
33
|
+
*.spec
|
|
34
|
+
|
|
35
|
+
# Installer logs
|
|
36
|
+
pip-log.txt
|
|
37
|
+
pip-delete-this-directory.txt
|
|
38
|
+
|
|
39
|
+
# Unit test / coverage reports
|
|
40
|
+
htmlcov/
|
|
41
|
+
.tox/
|
|
42
|
+
.nox/
|
|
43
|
+
.coverage
|
|
44
|
+
.coverage.*
|
|
45
|
+
.cache
|
|
46
|
+
nosetests.xml
|
|
47
|
+
coverage.xml
|
|
48
|
+
*.cover
|
|
49
|
+
*.py.cover
|
|
50
|
+
.hypothesis/
|
|
51
|
+
.pytest_cache/
|
|
52
|
+
cover/
|
|
53
|
+
|
|
54
|
+
# Translations
|
|
55
|
+
*.mo
|
|
56
|
+
*.pot
|
|
57
|
+
|
|
58
|
+
# Django stuff:
|
|
59
|
+
*.log
|
|
60
|
+
local_settings.py
|
|
61
|
+
db.sqlite3
|
|
62
|
+
db.sqlite3-journal
|
|
63
|
+
|
|
64
|
+
# Flask stuff:
|
|
65
|
+
instance/
|
|
66
|
+
.webassets-cache
|
|
67
|
+
|
|
68
|
+
# Scrapy stuff:
|
|
69
|
+
.scrapy
|
|
70
|
+
|
|
71
|
+
# Sphinx documentation
|
|
72
|
+
docs/_build/
|
|
73
|
+
|
|
74
|
+
# PyBuilder
|
|
75
|
+
.pybuilder/
|
|
76
|
+
target/
|
|
77
|
+
|
|
78
|
+
# Jupyter Notebook
|
|
79
|
+
.ipynb_checkpoints
|
|
80
|
+
|
|
81
|
+
# IPython
|
|
82
|
+
profile_default/
|
|
83
|
+
ipython_config.py
|
|
84
|
+
|
|
85
|
+
# pyenv
|
|
86
|
+
# For a library or package, you might want to ignore these files since the code is
|
|
87
|
+
# intended to run in multiple environments; otherwise, check them in:
|
|
88
|
+
# .python-version
|
|
89
|
+
|
|
90
|
+
# pipenv
|
|
91
|
+
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
|
|
92
|
+
# However, in case of collaboration, if having platform-specific dependencies or dependencies
|
|
93
|
+
# having no cross-platform support, pipenv may install dependencies that don't work, or not
|
|
94
|
+
# install all needed dependencies.
|
|
95
|
+
# Pipfile.lock
|
|
96
|
+
|
|
97
|
+
# UV
|
|
98
|
+
# Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
|
|
99
|
+
# This is especially recommended for binary packages to ensure reproducibility, and is more
|
|
100
|
+
# commonly ignored for libraries.
|
|
101
|
+
# uv.lock
|
|
102
|
+
|
|
103
|
+
# poetry
|
|
104
|
+
# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
|
|
105
|
+
# This is especially recommended for binary packages to ensure reproducibility, and is more
|
|
106
|
+
# commonly ignored for libraries.
|
|
107
|
+
# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
|
|
108
|
+
# poetry.lock
|
|
109
|
+
# poetry.toml
|
|
110
|
+
|
|
111
|
+
# pdm
|
|
112
|
+
# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
|
|
113
|
+
# pdm recommends including project-wide configuration in pdm.toml, but excluding .pdm-python.
|
|
114
|
+
# https://pdm-project.org/en/latest/usage/project/#working-with-version-control
|
|
115
|
+
# pdm.lock
|
|
116
|
+
# pdm.toml
|
|
117
|
+
.pdm-python
|
|
118
|
+
.pdm-build/
|
|
119
|
+
|
|
120
|
+
# pixi
|
|
121
|
+
# Similar to Pipfile.lock, it is generally recommended to include pixi.lock in version control.
|
|
122
|
+
# pixi.lock
|
|
123
|
+
# Pixi creates a virtual environment in the .pixi directory, just like venv module creates one
|
|
124
|
+
# in the .venv directory. It is recommended not to include this directory in version control.
|
|
125
|
+
.pixi
|
|
126
|
+
|
|
127
|
+
# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
|
|
128
|
+
__pypackages__/
|
|
129
|
+
|
|
130
|
+
# Celery stuff
|
|
131
|
+
celerybeat-schedule
|
|
132
|
+
celerybeat.pid
|
|
133
|
+
|
|
134
|
+
# Redis
|
|
135
|
+
*.rdb
|
|
136
|
+
*.aof
|
|
137
|
+
*.pid
|
|
138
|
+
|
|
139
|
+
# RabbitMQ
|
|
140
|
+
mnesia/
|
|
141
|
+
rabbitmq/
|
|
142
|
+
rabbitmq-data/
|
|
143
|
+
|
|
144
|
+
# ActiveMQ
|
|
145
|
+
activemq-data/
|
|
146
|
+
|
|
147
|
+
# SageMath parsed files
|
|
148
|
+
*.sage.py
|
|
149
|
+
|
|
150
|
+
# Environments
|
|
151
|
+
.env
|
|
152
|
+
.envrc
|
|
153
|
+
.venv
|
|
154
|
+
env/
|
|
155
|
+
venv/
|
|
156
|
+
ENV/
|
|
157
|
+
env.bak/
|
|
158
|
+
venv.bak/
|
|
159
|
+
|
|
160
|
+
# Spyder project settings
|
|
161
|
+
.spyderproject
|
|
162
|
+
.spyproject
|
|
163
|
+
|
|
164
|
+
# Rope project settings
|
|
165
|
+
.ropeproject
|
|
166
|
+
|
|
167
|
+
# mkdocs documentation
|
|
168
|
+
/site
|
|
169
|
+
|
|
170
|
+
# mypy
|
|
171
|
+
.mypy_cache/
|
|
172
|
+
.dmypy.json
|
|
173
|
+
dmypy.json
|
|
174
|
+
|
|
175
|
+
# Pyre type checker
|
|
176
|
+
.pyre/
|
|
177
|
+
|
|
178
|
+
# pytype static type analyzer
|
|
179
|
+
.pytype/
|
|
180
|
+
|
|
181
|
+
# Cython debug symbols
|
|
182
|
+
cython_debug/
|
|
183
|
+
|
|
184
|
+
# PyCharm
|
|
185
|
+
# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
|
|
186
|
+
# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
|
|
187
|
+
# and can be added to the global gitignore or merged into this file. For a more nuclear
|
|
188
|
+
# option (not recommended) you can uncomment the following to ignore the entire idea folder.
|
|
189
|
+
# .idea/
|
|
190
|
+
|
|
191
|
+
# Abstra
|
|
192
|
+
# Abstra is an AI-powered process automation framework.
|
|
193
|
+
# Ignore directories containing user credentials, local state, and settings.
|
|
194
|
+
# Learn more at https://abstra.io/docs
|
|
195
|
+
.abstra/
|
|
196
|
+
|
|
197
|
+
# Visual Studio Code
|
|
198
|
+
# Visual Studio Code specific template is maintained in a separate VisualStudioCode.gitignore
|
|
199
|
+
# that can be found at https://github.com/github/gitignore/blob/main/Global/VisualStudioCode.gitignore
|
|
200
|
+
# and can be added to the global gitignore or merged into this file. However, if you prefer,
|
|
201
|
+
# you could uncomment the following to ignore the entire vscode folder
|
|
202
|
+
# .vscode/
|
|
203
|
+
# Temporary file for partial code execution
|
|
204
|
+
tempCodeRunnerFile.py
|
|
205
|
+
|
|
206
|
+
# Ruff stuff:
|
|
207
|
+
.ruff_cache/
|
|
208
|
+
|
|
209
|
+
# PyPI configuration file
|
|
210
|
+
.pypirc
|
|
211
|
+
|
|
212
|
+
# Marimo
|
|
213
|
+
marimo/_static/
|
|
214
|
+
marimo/_lsp/
|
|
215
|
+
__marimo__/
|
|
216
|
+
|
|
217
|
+
# Streamlit
|
|
218
|
+
.streamlit/secrets.toml
|
|
@@ -0,0 +1,24 @@
|
|
|
1
|
+
# Changelog
|
|
2
|
+
|
|
3
|
+
All notable changes to plasmasds_fields are listed here, newest first. The format follows [Keep a Changelog](https://keepachangelog.com/en/1.1.0/); the version numbers are explained in the README, under "Releases".
|
|
4
|
+
|
|
5
|
+
## Unreleased
|
|
6
|
+
|
|
7
|
+
## 0.1.0
|
|
8
|
+
|
|
9
|
+
First release as a package that can be installed with pip.
|
|
10
|
+
|
|
11
|
+
### Added
|
|
12
|
+
- W7-X Poincaré flux surfaces: loading field-line tracer results, selecting surfaces, labelling island and non-island points (`label_surfaces`), assigning densities from a radial profile (`add_density`) and converting them to scattered and regular 2-D density fields.
|
|
13
|
+
- 1-D profile interpolation with editable datapoints (`ProfileInterpolator1D`).
|
|
14
|
+
- Contour plots, slices and GIF animations of 2-D and time-dependent (R, Z) fields.
|
|
15
|
+
- Reading and extending HESEL simulation output, generic 2-D background profiles, and Gaussian-filament and sine-wave perturbations with HDF5 output.
|
|
16
|
+
- Unit tests, run by GitHub Actions on Linux and Windows with Python 3.11 to 3.13; some use public test datasets fetched with `plasmasds_utility`.
|
|
17
|
+
|
|
18
|
+
### Fixed
|
|
19
|
+
Fixes made during the development leading to this release:
|
|
20
|
+
- Island density allocation: side fit errors from the points of each side, island tip points assigned to the nearest side, and reduced-order fits for surfaces with too few points (#27).
|
|
21
|
+
- Input checks, warnings and error messages of the W7-X functions (#29).
|
|
22
|
+
- Gaussian filaments: the requested FWHM, and no filaments missing near grid edges or on grids with different R and Z spacing (#32).
|
|
23
|
+
- The perturbation generators accept the (NZ, NR) field layout of `make_regular_density_field` (#31).
|
|
24
|
+
- HDF5 output files are closed also when a run fails (#35).
|