pingmapper 5.5.4__tar.gz → 5.5.5__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (60) hide show
  1. {pingmapper-5.5.4 → pingmapper-5.5.5}/PKG-INFO +1 -1
  2. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/class_sonObj.py +10 -0
  3. pingmapper-5.5.5/pingmapper/version.py +1 -0
  4. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper.egg-info/PKG-INFO +1 -1
  5. pingmapper-5.5.4/pingmapper/version.py +0 -1
  6. {pingmapper-5.5.4 → pingmapper-5.5.5}/LICENSE +0 -0
  7. {pingmapper-5.5.4 → pingmapper-5.5.5}/README.md +0 -0
  8. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/__init__.py +0 -0
  9. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/__main__.py +0 -0
  10. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/class_mapSubstrateObj.py +0 -0
  11. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/class_portstarObj.py +0 -0
  12. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/class_rectObj.py +0 -0
  13. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/class_sonObj_nadirgaptest.py +0 -0
  14. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/default_params.json +0 -0
  15. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/doWork.py +0 -0
  16. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/funcs_common.py +0 -0
  17. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/funcs_model.py +0 -0
  18. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/funcs_rectify.py +0 -0
  19. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/gui_main.py +0 -0
  20. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/main_mapSubstrate.py +0 -0
  21. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/main_readFiles.py +0 -0
  22. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/main_rectify.py +0 -0
  23. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/nonGUI_batch_main.py +0 -0
  24. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/nonGui_main.py +0 -0
  25. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/processing_scripts/main_batchDirectory_2024-01-18_0926.py +0 -0
  26. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/processing_scripts/main_batchDirectory_2024-01-18_0929.py +0 -0
  27. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/scratch/funcs_pyhum_correct.py +0 -0
  28. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/scratch/main.py +0 -0
  29. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/scratch/main_batchDirectory.py +0 -0
  30. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/self_check.py +0 -0
  31. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/test_PINGMapper.py +0 -0
  32. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/test_cli_self_check.py +0 -0
  33. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/test_dq_filter.py +0 -0
  34. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/test_time.py +0 -0
  35. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/DRAFT_Workflows/avg_predictions_Mussel_WBL.py +0 -0
  36. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/DRAFT_Workflows/gen_centerline.py +0 -0
  37. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/DRAFT_Workflows/gen_centerline_from_bankline.py +0 -0
  38. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/DRAFT_Workflows/gen_centerline_trkpnts_fitspline_DRAFT.py +0 -0
  39. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/DRAFT_Workflows/testEXAMPLE_mosaic_logit.py +0 -0
  40. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/RawEGN_avg_predictions.py +0 -0
  41. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/Substrate_Summaries/00_substrate_logits_mosaic_transects.py +0 -0
  42. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/Substrate_Summaries/00_substrate_shps_mosaic_transects.py +0 -0
  43. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/Substrate_Summaries/01_gen_centerline_from_coverage.py +0 -0
  44. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/Substrate_Summaries/02_gen_summary_stamp_shps.py +0 -0
  45. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/Substrate_Summaries/03_gen_summary_shp.py +0 -0
  46. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/Substrate_Summaries/04_combine_summary_shp_csv.py +0 -0
  47. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/Substrate_Summaries/05_gen_summary_shp_plots.py +0 -0
  48. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/Substrate_Summaries/06_compare_raw-egn_volume.py +0 -0
  49. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/Substrate_Summaries/08_raw-egn_hardReacheFreq_hist.py +0 -0
  50. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/Substrate_Summaries/09_raw-egn_PatchSize_density.py +0 -0
  51. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/Substrate_Summaries/summarize_project_substrate.py +0 -0
  52. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/export_coverage.py +0 -0
  53. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/utils/main_mosaic_transects.py +0 -0
  54. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper.egg-info/SOURCES.txt +0 -0
  55. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper.egg-info/dependency_links.txt +0 -0
  56. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper.egg-info/requires.txt +0 -0
  57. {pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper.egg-info/top_level.txt +0 -0
  58. {pingmapper-5.5.4 → pingmapper-5.5.5}/pyproject.toml +0 -0
  59. {pingmapper-5.5.4 → pingmapper-5.5.5}/setup.cfg +0 -0
  60. {pingmapper-5.5.4 → pingmapper-5.5.5}/setup.py +0 -0
{pingmapper-5.5.4 → pingmapper-5.5.5}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: pingmapper
3
- Version: 5.5.4
3
+ Version: 5.5.5
4
4
  Summary: Open-source interface for processing recreation-grade side scan sonar datasets and reproducibly mapping benthic habitat
5
5
  Author: Cameron Bodine, Daniel Buscombe, Iury T Simoes-Sousa
6
6
  Author-email: bodine.cs@gmail.email
{pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper/class_sonObj.py RENAMED
@@ -1356,6 +1356,16 @@ class sonObj(object):
1356
1356
  arr[~valid] = 0.0
1357
1357
  return arr
1358
1358
 
1359
+ def _normalize_with_bounds(self, data, lo, hi):
1360
+ arr = np.asarray(data, dtype=np.float32)
1361
+ arr[~np.isfinite(arr)] = 0.0
1362
+
1363
+ if (not np.isfinite(lo)) or (not np.isfinite(hi)) or hi <= lo:
1364
+ return np.clip(arr, 0.0, 1.0).astype(np.float32)
1365
+
1366
+ norm = (arr - float(lo)) / (float(hi) - float(lo))
1367
+ return np.clip(norm, 0.0, 1.0).astype(np.float32)
1368
+
1359
1369
  def _apply_display_db_transform(self, sonDat):
1360
1370
  arr = np.asarray(sonDat, dtype=np.float32)
1361
1371
  if arr.size == 0:
pingmapper-5.5.5/pingmapper/version.py ADDED
@@ -0,0 +1 @@
1
+ __version__ = '5.5.5'
{pingmapper-5.5.4 → pingmapper-5.5.5}/pingmapper.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: pingmapper
3
- Version: 5.5.4
3
+ Version: 5.5.5
4
4
  Summary: Open-source interface for processing recreation-grade side scan sonar datasets and reproducibly mapping benthic habitat
5
5
  Author: Cameron Bodine, Daniel Buscombe, Iury T Simoes-Sousa
6
6
  Author-email: bodine.cs@gmail.email
pingmapper-5.5.4/pingmapper/version.py DELETED
@@ -1 +0,0 @@
1
- __version__ = '5.5.4'
{pingmapper-5.5.4 → pingmapper-5.5.5}/LICENSE RENAMED
File without changes
{pingmapper-5.5.4 → pingmapper-5.5.5}/README.md RENAMED
File without changes
{pingmapper-5.5.4 → pingmapper-5.5.5}/pyproject.toml RENAMED
File without changes
{pingmapper-5.5.4 → pingmapper-5.5.5}/setup.cfg RENAMED
File without changes
{pingmapper-5.5.4 → pingmapper-5.5.5}/setup.py RENAMED
File without changes