pingmapper 5.4.3__tar.gz → 5.4.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (58) hide show
  1. {pingmapper-5.4.3 → pingmapper-5.4.4}/PKG-INFO +1 -1
  2. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/class_rectObj.py +4 -4
  3. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/class_sonObj.py +4 -1
  4. pingmapper-5.4.4/pingmapper/version.py +1 -0
  5. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper.egg-info/PKG-INFO +1 -1
  6. pingmapper-5.4.3/pingmapper/version.py +0 -1
  7. {pingmapper-5.4.3 → pingmapper-5.4.4}/LICENSE +0 -0
  8. {pingmapper-5.4.3 → pingmapper-5.4.4}/README.md +0 -0
  9. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/__init__.py +0 -0
  10. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/__main__.py +0 -0
  11. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/class_mapSubstrateObj.py +0 -0
  12. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/class_portstarObj.py +0 -0
  13. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/class_sonObj_nadirgaptest.py +0 -0
  14. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/default_params.json +0 -0
  15. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/doWork.py +0 -0
  16. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/funcs_common.py +0 -0
  17. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/funcs_model.py +0 -0
  18. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/funcs_rectify.py +0 -0
  19. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/gui_main.py +0 -0
  20. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/main_mapSubstrate.py +0 -0
  21. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/main_readFiles.py +0 -0
  22. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/main_rectify.py +0 -0
  23. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/nonGUI_batch_main.py +0 -0
  24. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/nonGui_main.py +0 -0
  25. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/processing_scripts/main_batchDirectory_2024-01-18_0926.py +0 -0
  26. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/processing_scripts/main_batchDirectory_2024-01-18_0929.py +0 -0
  27. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/scratch/funcs_pyhum_correct.py +0 -0
  28. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/scratch/main.py +0 -0
  29. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/scratch/main_batchDirectory.py +0 -0
  30. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/test_PINGMapper.py +0 -0
  31. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/test_dq_filter.py +0 -0
  32. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/test_time.py +0 -0
  33. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/DRAFT_Workflows/avg_predictions_Mussel_WBL.py +0 -0
  34. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/DRAFT_Workflows/gen_centerline.py +0 -0
  35. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/DRAFT_Workflows/gen_centerline_from_bankline.py +0 -0
  36. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/DRAFT_Workflows/gen_centerline_trkpnts_fitspline_DRAFT.py +0 -0
  37. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/DRAFT_Workflows/testEXAMPLE_mosaic_logit.py +0 -0
  38. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/RawEGN_avg_predictions.py +0 -0
  39. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/Substrate_Summaries/00_substrate_logits_mosaic_transects.py +0 -0
  40. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/Substrate_Summaries/00_substrate_shps_mosaic_transects.py +0 -0
  41. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/Substrate_Summaries/01_gen_centerline_from_coverage.py +0 -0
  42. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/Substrate_Summaries/02_gen_summary_stamp_shps.py +0 -0
  43. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/Substrate_Summaries/03_gen_summary_shp.py +0 -0
  44. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/Substrate_Summaries/04_combine_summary_shp_csv.py +0 -0
  45. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/Substrate_Summaries/05_gen_summary_shp_plots.py +0 -0
  46. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/Substrate_Summaries/06_compare_raw-egn_volume.py +0 -0
  47. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/Substrate_Summaries/08_raw-egn_hardReacheFreq_hist.py +0 -0
  48. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/Substrate_Summaries/09_raw-egn_PatchSize_density.py +0 -0
  49. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/Substrate_Summaries/summarize_project_substrate.py +0 -0
  50. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/export_coverage.py +0 -0
  51. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper/utils/main_mosaic_transects.py +0 -0
  52. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper.egg-info/SOURCES.txt +0 -0
  53. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper.egg-info/dependency_links.txt +0 -0
  54. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper.egg-info/requires.txt +0 -0
  55. {pingmapper-5.4.3 → pingmapper-5.4.4}/pingmapper.egg-info/top_level.txt +0 -0
  56. {pingmapper-5.4.3 → pingmapper-5.4.4}/pyproject.toml +0 -0
  57. {pingmapper-5.4.3 → pingmapper-5.4.4}/setup.cfg +0 -0
  58. {pingmapper-5.4.3 → pingmapper-5.4.4}/setup.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pingmapper
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- Version: 5.4.3
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+ Version: 5.4.4
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  Summary: Open-source interface for processing recreation-grade side scan sonar datasets and reproducibly mapping benthic habitat
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  Author: Daniel Buscombe
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  Author-email: Cameron Bodine <bodine.cs@gmail.email>
@@ -327,7 +327,7 @@ class rectObj(sonObj):
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  if self.egn_stretch > 0:
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  self._egnDoStretch()
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- img = self._reserve_zero_for_nodata(self.sonDat)
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+ img = self._reserve_zero_for_nodata(self.sonDat, preserve_zeros=True)
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  img = self._prepare_export_uint16(img)
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  vals = img[img > 0]
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  if vals.size == 0:
@@ -1861,7 +1861,7 @@ class rectObj(sonObj):
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  col = df[xPix].to_numpy().astype(int)
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  data = df[sonCol].to_numpy()
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  if son:
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- data = self._reserve_zero_for_nodata(data)
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+ data = self._reserve_zero_for_nodata(data, preserve_zeros=True)
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  apply_post_rect_colormap = use_16bit and self._rect_colormap_selected(son=son)
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  source_scale_bounds = None
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  if apply_post_rect_colormap:
@@ -2721,7 +2721,7 @@ class rectObj(sonObj):
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  img = self.sonDat.copy()
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  if son:
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- img = self._reserve_zero_for_nodata(img)
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+ img = self._reserve_zero_for_nodata(img, preserve_zeros=True)
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  apply_post_rect_colormap = use_16bit and self._rect_colormap_selected(son=son)
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  source_scale_bounds = None
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  if apply_post_rect_colormap:
@@ -2812,7 +2812,7 @@ class rectObj(sonObj):
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  img = self.sonDat
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  if son:
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- img = self._reserve_zero_for_nodata(img)
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+ img = self._reserve_zero_for_nodata(img, preserve_zeros=True)
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  apply_post_rect_colormap = son and use_16bit and self._rect_colormap_selected(son=son)
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  source_scale_bounds = None
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  if apply_post_rect_colormap:
@@ -1931,12 +1931,15 @@ class sonObj(object):
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  return bool(getattr(self, 'export_colormap_uint8', True))
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  # ======================================================================
1934
- def _reserve_zero_for_nodata(self, data):
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+ def _reserve_zero_for_nodata(self, data, preserve_zeros=False):
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  arr = np.asarray(data)
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  if arr.size == 0:
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  return arr
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+ if preserve_zeros:
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+ return arr.copy()
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+
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  out = arr.copy()
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  if np.issubdtype(out.dtype, np.floating):
@@ -0,0 +1 @@
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+ __version__ = '5.4.4'
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: pingmapper
3
- Version: 5.4.3
3
+ Version: 5.4.4
4
4
  Summary: Open-source interface for processing recreation-grade side scan sonar datasets and reproducibly mapping benthic habitat
5
5
  Author: Daniel Buscombe
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  Author-email: Cameron Bodine <bodine.cs@gmail.email>
@@ -1 +0,0 @@
1
- __version__ = '5.4.3'
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