pingmapper 5.3.3__tar.gz → 5.3.5__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (54) hide show
  1. {pingmapper-5.3.3 → pingmapper-5.3.5}/PKG-INFO +1 -1
  2. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/class_portstarObj.py +1 -1
  3. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/class_sonObj.py +2 -2
  4. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/class_sonObj_nadirgaptest.py +2 -2
  5. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/funcs_common.py +2 -2
  6. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/gui_main.py +2 -5
  7. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/main_mapSubstrate.py +2 -1
  8. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/main_readFiles.py +2 -1
  9. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/main_rectify.py +2 -1
  10. pingmapper-5.3.5/pingmapper/version.py +1 -0
  11. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper.egg-info/PKG-INFO +1 -1
  12. pingmapper-5.3.3/pingmapper/version.py +0 -1
  13. {pingmapper-5.3.3 → pingmapper-5.3.5}/LICENSE +0 -0
  14. {pingmapper-5.3.3 → pingmapper-5.3.5}/README.md +0 -0
  15. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/__init__.py +0 -0
  16. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/__main__.py +0 -0
  17. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/class_mapSubstrateObj.py +0 -0
  18. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/class_rectObj.py +0 -0
  19. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/default_params.json +0 -0
  20. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/doWork.py +0 -0
  21. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/funcs_model.py +0 -0
  22. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/funcs_rectify.py +0 -0
  23. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/processing_scripts/main_batchDirectory_2024-01-18_0926.py +0 -0
  24. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/processing_scripts/main_batchDirectory_2024-01-18_0929.py +0 -0
  25. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/scratch/funcs_pyhum_correct.py +0 -0
  26. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/scratch/main.py +0 -0
  27. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/scratch/main_batchDirectory.py +0 -0
  28. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/test_PINGMapper.py +0 -0
  29. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/test_time.py +0 -0
  30. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/DRAFT_Workflows/avg_predictions_Mussel_WBL.py +0 -0
  31. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/DRAFT_Workflows/gen_centerline.py +0 -0
  32. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/DRAFT_Workflows/gen_centerline_from_bankline.py +0 -0
  33. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/DRAFT_Workflows/gen_centerline_trkpnts_fitspline_DRAFT.py +0 -0
  34. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/DRAFT_Workflows/testEXAMPLE_mosaic_logit.py +0 -0
  35. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/RawEGN_avg_predictions.py +0 -0
  36. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/Substrate_Summaries/00_substrate_logits_mosaic_transects.py +0 -0
  37. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/Substrate_Summaries/00_substrate_shps_mosaic_transects.py +0 -0
  38. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/Substrate_Summaries/01_gen_centerline_from_coverage.py +0 -0
  39. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/Substrate_Summaries/02_gen_summary_stamp_shps.py +0 -0
  40. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/Substrate_Summaries/03_gen_summary_shp.py +0 -0
  41. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/Substrate_Summaries/04_combine_summary_shp_csv.py +0 -0
  42. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/Substrate_Summaries/05_gen_summary_shp_plots.py +0 -0
  43. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/Substrate_Summaries/06_compare_raw-egn_volume.py +0 -0
  44. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/Substrate_Summaries/08_raw-egn_hardReacheFreq_hist.py +0 -0
  45. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/Substrate_Summaries/09_raw-egn_PatchSize_density.py +0 -0
  46. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/Substrate_Summaries/summarize_project_substrate.py +0 -0
  47. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/export_coverage.py +0 -0
  48. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper/utils/main_mosaic_transects.py +0 -0
  49. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper.egg-info/SOURCES.txt +0 -0
  50. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper.egg-info/dependency_links.txt +0 -0
  51. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper.egg-info/requires.txt +0 -0
  52. {pingmapper-5.3.3 → pingmapper-5.3.5}/pingmapper.egg-info/top_level.txt +0 -0
  53. {pingmapper-5.3.3 → pingmapper-5.3.5}/pyproject.toml +0 -0
  54. {pingmapper-5.3.3 → pingmapper-5.3.5}/setup.cfg +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: pingmapper
3
- Version: 5.3.3
3
+ Version: 5.3.5
4
4
  Summary: Open-source interface for processing recreation-grade side scan sonar datasets and reproducibly mapping benthic habitat
5
5
  Author: Daniel Buscombe
6
6
  Author-email: Cameron Bodine <bodine.cs@gmail.email>
@@ -2305,7 +2305,7 @@ class portstarObj(object):
2305
2305
  dd = float(depth * depth)
2306
2306
  row_arr = np.arange(depth, H_pred)
2307
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  src_idx = np.round(
2308
- np.sqrt(row_arr.astype(np.float64) ** 2 - dd)
2308
+ np.sqrt(row_arr.astype(np.float32) ** 2 - dd)
2309
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  ).astype(int)
2310
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  valid = src_idx < H_pred
2311
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  rows_v = row_arr[valid]
@@ -1328,7 +1328,7 @@ class sonObj(object):
1328
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  row_arr = np.arange(depth, H)
1329
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  # Horizontal range index via Pythagorean theorem (vectorised)
1330
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  src_idx = np.round(
1331
- np.sqrt(row_arr.astype(np.float64) ** 2 - dd)
1331
+ np.sqrt(row_arr.astype(np.float32) ** 2 - dd)
1332
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  ).astype(int)
1333
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1334
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  # Discard out-of-bounds indices
@@ -2919,7 +2919,7 @@ class sonObj(object):
2919
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  '''
2920
2920
 
2921
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  # Get sonDat
2922
- sonDat = self.sonDat.astype('float64')
2922
+ sonDat = self.sonDat.astype('float32')
2923
2923
 
2924
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  # Create mask from zero values
2925
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  mask = np.where(sonDat == 0, 0, 1)
@@ -957,7 +957,7 @@ class sonObj(object):
957
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  row_arr = np.arange(depth, H)
958
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  # Horizontal range via Pythagorean theorem, plus nadir gap offset
959
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  src_idx = np.round(
960
- np.sqrt(row_arr.astype(np.float64) ** 2 - dd)
960
+ np.sqrt(row_arr.astype(np.float32) ** 2 - dd)
961
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  ).astype(int) + nadirGap
962
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963
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  # Discard out-of-bounds indices
@@ -2356,7 +2356,7 @@ class sonObj(object):
2356
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  '''
2357
2357
 
2358
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  # Get sonDat
2359
- sonDat = self.sonDat.astype('float64')
2359
+ sonDat = self.sonDat.astype('float32')
2360
2360
 
2361
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  # Create mask from zero values
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  mask = np.where(sonDat == 0, 0, 1)
@@ -443,7 +443,7 @@ def saveDefaultParams(values, user_params=None):
443
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  return {k: _sanitize(val) for k, val in v.items()}
444
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  if isinstance(v, (np.integer, np.int_, np.int64)):
445
445
  return int(v)
446
- if isinstance(v, (np.floating, np.float64, np.float64)):
446
+ if isinstance(v, (np.floating, np.float32, np.float32)):
447
447
  return float(v)
448
448
  if isinstance(v, (np.ndarray, list, tuple)):
449
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  return [_sanitize(x) for x in v]
@@ -516,7 +516,7 @@ class FastPiecewiseAffineTransform(PiecewiseAffineTransform):
516
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  [self.affines[i].params for i in range(len(self._tesselation.simplices))]
517
517
  )
518
518
 
519
- result = np.empty((n, 3), dtype=np.float64)
519
+ result = np.empty((n, 3), dtype=np.float32)
520
520
 
521
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  # Process in batches to avoid large allocations in find_simplex and the
522
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  # affine einsum, both of which scale with n_coords and can exceed several GiB.
@@ -2,11 +2,8 @@
2
2
  import sys, os
3
3
  import webbrowser
4
4
 
5
- PySimpleGUI_License = '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'
6
- try:
7
- import FreeSimpleGUI as sg
8
- except ImportError:
9
- import PySimpleGUI as sg
5
+
6
+ import FreeSimpleGUI as sg
10
7
  import matplotlib.pyplot as plt
11
8
 
12
9
  # Add 'pingmapper' to the path, may not need after pypi package...
@@ -110,7 +110,8 @@ def map_master_func(logfilename='',
110
110
  banklines=False,
111
111
  export_16bit=False,
112
112
  export_16bit_colormap=False,
113
- export_colormap_uint8=True):
113
+ export_colormap_uint8=True,
114
+ **kwargs):
114
115
 
115
116
  '''
116
117
  Main script to map substrates from side scan sonar imagery.
@@ -158,7 +158,8 @@ def read_master_func(logfilename='',
158
158
  mosaic=False,
159
159
  map_mosaic=0,
160
160
  banklines=False,
161
- return_context=False):
161
+ return_context=False,
162
+ **kwargs):
162
163
 
163
164
  '''
164
165
  Main script to read data from Humminbird sonar recordings. Scripts have been
@@ -156,7 +156,8 @@ def rectify_master_func(logfilename='',
156
156
  mosaic_nchunk=50,
157
157
  mosaic=False,
158
158
  map_mosaic=0,
159
- banklines=False):
159
+ banklines=False,
160
+ **kwargs):
160
161
  '''
161
162
  Main script to rectify side scan sonar imagery from a Humminbird.
162
163
 
@@ -0,0 +1 @@
1
+ __version__ = '5.3.5'
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: pingmapper
3
- Version: 5.3.3
3
+ Version: 5.3.5
4
4
  Summary: Open-source interface for processing recreation-grade side scan sonar datasets and reproducibly mapping benthic habitat
5
5
  Author: Daniel Buscombe
6
6
  Author-email: Cameron Bodine <bodine.cs@gmail.email>
@@ -1 +0,0 @@
1
- __version__ = '5.3.3'
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