pikobs 3.0.332__tar.gz → 3.0.333__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (169) hide show
  1. {pikobs-3.0.332 → pikobs-3.0.333}/CHANGELOG.md +4 -0
  2. {pikobs-3.0.332/pikobs.egg-info → pikobs-3.0.333}/PKG-INFO +1 -1
  3. pikobs-3.0.333/VERSION +1 -0
  4. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/obstimedb/obstimedb.py +19 -0
  5. {pikobs-3.0.332 → pikobs-3.0.333/pikobs.egg-info}/PKG-INFO +1 -1
  6. pikobs-3.0.332/VERSION +0 -1
  7. {pikobs-3.0.332 → pikobs-3.0.333}/.gitignore +0 -0
  8. {pikobs-3.0.332 → pikobs-3.0.333}/MANIFEST.in +0 -0
  9. {pikobs-3.0.332 → pikobs-3.0.333}/README.md +0 -0
  10. {pikobs-3.0.332 → pikobs-3.0.333}/clear.sh +0 -0
  11. {pikobs-3.0.332 → pikobs-3.0.333}/conda_build/pikobs/activate.sh +0 -0
  12. {pikobs-3.0.332 → pikobs-3.0.333}/conda_build/pikobs/build.sh +0 -0
  13. {pikobs-3.0.332 → pikobs-3.0.333}/conda_build/pikobs/meta.yaml +0 -0
  14. {pikobs-3.0.332 → pikobs-3.0.333}/conda_build/pikobs/pikobs.yml +0 -0
  15. {pikobs-3.0.332 → pikobs-3.0.333}/docs/Makefile +0 -0
  16. {pikobs-3.0.332 → pikobs-3.0.333}/docs/make.bat +0 -0
  17. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/cardio.rst +0 -0
  18. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/conf.py +0 -0
  19. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/families.rst +0 -0
  20. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/flag.rst +0 -0
  21. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/flags_criteria.rst +0 -0
  22. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/histogram.rst +0 -0
  23. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/index.rst +0 -0
  24. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/mapobs.rst +0 -0
  25. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/obscountdb.rst +0 -0
  26. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/obstimedb.rst +0 -0
  27. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/pikobsburp2rdb.rst +0 -0
  28. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/profile.rst +0 -0
  29. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/profile_ft.rst +0 -0
  30. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/profile_ft2.rst +0 -0
  31. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/projection.rst +0 -0
  32. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/region.rst +0 -0
  33. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/scatter.rst +0 -0
  34. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/spatial.rst +0 -0
  35. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/timeserie.rst +0 -0
  36. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/unittest.rst +0 -0
  37. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/varno.rst +0 -0
  38. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/vdedr.rst +0 -0
  39. {pikobs-3.0.332 → pikobs-3.0.333}/docs/source/zone.rst +0 -0
  40. {pikobs-3.0.332 → pikobs-3.0.333}/env/.mambarc +0 -0
  41. {pikobs-3.0.332 → pikobs-3.0.333}/env/conda-meta/history +0 -0
  42. {pikobs-3.0.332 → pikobs-3.0.333}/env/etc/aau_token +0 -0
  43. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/__init__.py +0 -0
  44. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/__not_used/plot_proj.py +0 -0
  45. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/__not_used/vdedr2.py +0 -0
  46. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/__not_used/vdedr3.py +0 -0
  47. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/cardio/__init__.py +0 -0
  48. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/cardio/cardio.py +0 -0
  49. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/cardio/cardio_plot.py +0 -0
  50. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/cardio/cardio_plot_old.py +0 -0
  51. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/configobs/__init__.py +0 -0
  52. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/configobs/delete_folder.py +0 -0
  53. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/configobs/families.py +0 -0
  54. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/configobs/familyobs.py +0 -0
  55. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/configobs/flags_criteria.py +0 -0
  56. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/configobs/regionsobs.py +0 -0
  57. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/configobs/special_family.py +0 -0
  58. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/configobs/type_boxes.py +0 -0
  59. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/configobs/type_projection.py +0 -0
  60. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/configobs/type_varno.py +0 -0
  61. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/extension/color_mapping.json +0 -0
  62. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/extension/libudfsqlite-shared.so +0 -0
  63. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/__init__.py +0 -0
  64. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/flags.py +0 -0
  65. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/flags_count.py +0 -0
  66. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/flags_plot.py +0 -0
  67. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/flags_plot0.py +0 -0
  68. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/flags_plot3.py +0 -0
  69. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/flags_plotv2.py +0 -0
  70. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/plotpo.py +0 -0
  71. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/plotpo2.py +0 -0
  72. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/plotpo3.py +0 -0
  73. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/plotpo4.py +0 -0
  74. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/plotpo5.py +0 -0
  75. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/plotpo7.py +0 -0
  76. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/plotpo8.py +0 -0
  77. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/flags/plotpo9.py +0 -0
  78. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/histogram/__init__.py +0 -0
  79. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/histogram/histogram.py +0 -0
  80. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/histogram/histogram_plot.py +0 -0
  81. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/mapobs/__init__.py +0 -0
  82. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/mapobs/color.j +0 -0
  83. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/mapobs/mapobs.py +0 -0
  84. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/obscountdb/__init__.py +0 -0
  85. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/obscountdb/obscountdb.py +0 -0
  86. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/obscountdb/obscountdb_old.py +0 -0
  87. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/obscountdb/obscountdb_plot.py +0 -0
  88. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/obscutoff/__init__.py +0 -0
  89. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/obscutoff/obscutoff.py +0 -0
  90. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/obscutoff/obscutoff_plot.py +0 -0
  91. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/obstimedb/__init__.py +0 -0
  92. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/obstimedb/obstimedb_plot.py +0 -0
  93. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/pbs_submit/__init__.py +0 -0
  94. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/pbs_submit/pbs_submit.py +0 -0
  95. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/pikobsburp2rdb/__init__.py +0 -0
  96. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/pikobsburp2rdb/pikobsburp2rdb.py +0 -0
  97. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/profile/__init__.py +0 -0
  98. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/profile/profile.py +0 -0
  99. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/profile/profile_plot.py +0 -0
  100. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/progps/__init__.py +0 -0
  101. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/progps/progps.py +0 -0
  102. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/progps2/__init__.py +0 -0
  103. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/progps2/progps2.py +0 -0
  104. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/scatter/__init__.py +0 -0
  105. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/scatter/scatter.py +0 -0
  106. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/remove.sh +0 -0
  107. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/remove2.py +0 -0
  108. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_2exp.sh +0 -0
  109. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_cardio.sh +0 -0
  110. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_cardio_lco.sh +0 -0
  111. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_cardio_sky.sh +0 -0
  112. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_flag.sh +0 -0
  113. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_histogra.sh +0 -0
  114. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_mapobs.sh +0 -0
  115. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_obscountdb.sh +0 -0
  116. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_obscountdb_1.sh +0 -0
  117. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_obstimedb.sh +0 -0
  118. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_pikobsburp2rdb.sh +0 -0
  119. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_profile.sh +0 -0
  120. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_profile_1.sh +0 -0
  121. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_profile_ra.sh +0 -0
  122. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_profile_radar.sh +0 -0
  123. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_profile_s.sh +0 -0
  124. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_progps.sh +0 -0
  125. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_progps2.sh +0 -0
  126. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_scatter.sh +0 -0
  127. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_scatter_diff.sh +0 -0
  128. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_scatter_one.sh +0 -0
  129. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_scatter_two_sw.sh +0 -0
  130. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_spatial.sh +0 -0
  131. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_timeserie.sh +0 -0
  132. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_timeserie_radar.sh +0 -0
  133. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_vdedr.sh +0 -0
  134. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/run_zone2.sh +0 -0
  135. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/setup_pikobs.sh +0 -0
  136. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/script/setup_pikobs.sh.1 +0 -0
  137. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/spatial/__init__.py +0 -0
  138. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/spatial/spatial.py +0 -0
  139. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/timeserie/__init__.py +0 -0
  140. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/timeserie/timeserie.py +0 -0
  141. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/timeserie/timeserie_plot.py +0 -0
  142. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/unittestpikobs/__init__.py +0 -0
  143. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/unittestpikobs/test_pikobs.py +0 -0
  144. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/unittestpikobs/unittest_timeserie.py +0 -0
  145. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/vdedr/__init__.py +0 -0
  146. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/vdedr/vdedr.py +0 -0
  147. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/vdedr/vdedr_plot.py +0 -0
  148. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/web/__init__.py +0 -0
  149. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/web/viewer.py +0 -0
  150. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/zone/__init__.py +0 -0
  151. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/zone/zone.py +0 -0
  152. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs/zone/zone_plot.py +0 -0
  153. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs.egg-info/SOURCES.txt +0 -0
  154. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs.egg-info/dependency_links.txt +0 -0
  155. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs.egg-info/requires.txt +0 -0
  156. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs.egg-info/top_level.txt +0 -0
  157. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs_env.yml +0 -0
  158. {pikobs-3.0.332 → pikobs-3.0.333}/pikobs_env2.yml +0 -0
  159. {pikobs-3.0.332 → pikobs-3.0.333}/publique.sh +0 -0
  160. {pikobs-3.0.332 → pikobs-3.0.333}/publique.txt +0 -0
  161. {pikobs-3.0.332 → pikobs-3.0.333}/readme/flag_criteria.md +0 -0
  162. {pikobs-3.0.332 → pikobs-3.0.333}/readme/geographic.md +0 -0
  163. {pikobs-3.0.332 → pikobs-3.0.333}/readme/read_projection.md +0 -0
  164. {pikobs-3.0.332 → pikobs-3.0.333}/readme/readme_cardiograme.md +0 -0
  165. {pikobs-3.0.332 → pikobs-3.0.333}/readme/readme_scatter.md +0 -0
  166. {pikobs-3.0.332 → pikobs-3.0.333}/setup.cfg +0 -0
  167. {pikobs-3.0.332 → pikobs-3.0.333}/setup.py +0 -0
  168. {pikobs-3.0.332 → pikobs-3.0.333}/setup_pikobs.sh +0 -0
  169. {pikobs-3.0.332 → pikobs-3.0.333}/setup_pikobs.sh.1 +0 -0
@@ -1155,3 +1155,7 @@ Please use the following tags when editing this file:
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  ## [3.0.332] 2026-09-01
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  ### Added
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  - bugs
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+
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+ ## [3.0.333] 2026-09-01
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+ ### Added
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+ - bugs
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: pikobs
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- Version: 3.0.332
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+ Version: 3.0.333
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  Summary: pikobs
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  Home-page: https://gitlab.science.gc.ca/dlo001/pikobs
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  Author: David Lobon
pikobs-3.0.333/VERSION ADDED
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+ 3.0.333
@@ -303,6 +303,24 @@ def create_table_if_not_exists(cursor: sqlite3.Cursor) -> None:
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  def combine(pathfileout: str, filememory: str) -> None:
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+ # Made idempotent: DELETE any existing rows in the target for the
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+ # SAME date(s) about to be inserted, before inserting. Without this,
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+ # re-running the extraction for a date already in the accumulator
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+ # (a retried/resumed job, or two separate --datestart/--dateend runs
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+ # with an overlapping date range writing to the same output db)
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+ # silently DUPLICATES that date's rows -- confirmed directly:
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+ # extracting the same file twice into the same accumulator produced
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+ # the SAME (date, id_stn) row twice, doubling every downstream sum
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+ # for that date (and, since different runs can overlap different
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+ # date spans by different amounts, this produces INCONSISTENT
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+ # inflation across periods -- e.g. Today off by one factor, This
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+ # week by another -- rather than one uniform, easy-to-spot scale
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+ # error). This delete makes a re-run REPLACE that date's data
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+ # instead of stacking a duplicate on top of it.
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+ delete_sql = """
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+ DELETE FROM moyenne
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+ WHERE date IN (SELECT DISTINCT date FROM this_avg_db.moyenne);
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+ """
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  insert_sql = """
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  INSERT INTO moyenne (Nobsdata, Nobsprofile, avg_omp, avg_oma, id_stn, channel, date)
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  SELECT Nobsdata, Nobsprofile, avg_omp, avg_oma, id_stn, channel, date
@@ -315,6 +333,7 @@ def combine(pathfileout: str, filememory: str) -> None:
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  create_table_if_not_exists(conn)
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  conn.execute(f"ATTACH DATABASE '{filememory}' AS this_avg_db;")
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+ conn.execute(delete_sql)
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  conn.execute(insert_sql)
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  conn.commit()
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  conn.execute("DETACH DATABASE this_avg_db;")
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: pikobs
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- Version: 3.0.332
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+ Version: 3.0.333
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  Summary: pikobs
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  Home-page: https://gitlab.science.gc.ca/dlo001/pikobs
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  Author: David Lobon
pikobs-3.0.332/VERSION DELETED
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File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes