pigeon-tem-comms 0.3.0__tar.gz → 0.4.1__tar.gz

{pigeon_tem_comms-0.3.0/pigeon_tem_comms.egg-info → pigeon_tem_comms-0.4.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pigeon-tem-comms
-Version: 0.3.0
+Version: 0.4.1
 Summary: Pigeon messages for the next generation TEM imaging system.
 Author-email: Cameron Devine <cameron.devine@alleninstitute.org>
 License: BSD 3 Clause

{pigeon_tem_comms-0.3.0 → pigeon_tem_comms-0.4.1}/TEM_comms/__init__.py

@@ -4,11 +4,9 @@ from . import scope
 from . import stage
 from . import tile
 from . import ui
+from . import montage
+from . import qc
 
-import importlib.metadata
-
-
-__version__ = importlib.metadata.version("pigeon-tem-comms")
 
 topics = {
     "buffer.status": buffer.Status,
@@ -35,7 +33,7 @@ topics = {
     "ui.edit": ui.Edit,
     "ui.run": ui.Run,
     "ui.setup": ui.Setup,
+    "montage.start": montage.Start,
+    "montage.finished": montage.Finished,
+    "qc.status": qc.Status,
 }
-
-
-msgs = (topics, __version__)

pigeon_tem_comms-0.4.1/TEM_comms/montage.py

@@ -0,0 +1,15 @@
+from pigeon import BaseMessage
+from typing import Mapping, List, Any
+
+
+class Start(BaseMessage):
+    montage_id: str
+    num_tiles: int
+
+
+class Finished(BaseMessage):
+    montage_id: str
+    num_tiles: int
+    roi: str
+    specimen: str
+    metadata: Mapping[str, Any] | List[Any]

pigeon_tem_comms-0.4.1/TEM_comms/qc.py

@@ -0,0 +1,6 @@
+from pigeon import BaseMessage
+from typing import Literal
+
+
+class Status(BaseMessage):
+    state: Literal["GOOD", "STOP_AT_END", "STOP_NOW"]

{pigeon_tem_comms-0.3.0 → pigeon_tem_comms-0.4.1}/TEM_comms/tile/__init__.py

@@ -12,22 +12,24 @@ class Minimap(BaseMessage):
     path: str
 
 
-class Processed(BaseMessage):
-    tile_id: str
-    path: str
-
-
 class Raw(BaseMessage):
     tile_id: str
     montage_id: str
     path: str
     row: int
     column: int
-    overlap: float
+    overlap: int
 
 
 class Transform(BaseMessage):
+    montage_id: str
     tile_id: str
     rotation: float
     x: float
     y: float
+
+
+class Processed(BaseMessage):
+    montage_id: str
+    tile_id: str
+    path: str

{pigeon_tem_comms-0.3.0 → pigeon_tem_comms-0.4.1}/TEM_comms/tile/statistics.py

@@ -2,17 +2,21 @@ from pigeon import BaseMessage
 
 
 class Focus(BaseMessage):
+    montage_id: str
     tile_id: str
     focus: float
 
 
 class Histogram(BaseMessage):
+    montage_id: str
     tile_id: str
     path: str
 
 
 class MinMaxMean(BaseMessage):
+    montage_id: str
     tile_id: str
     min: int
     max: int
     mean: int
+

{pigeon_tem_comms-0.3.0 → pigeon_tem_comms-0.4.1/pigeon_tem_comms.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pigeon-tem-comms
-Version: 0.3.0
+Version: 0.4.1
 Summary: Pigeon messages for the next generation TEM imaging system.
 Author-email: Cameron Devine <cameron.devine@alleninstitute.org>
 License: BSD 3 Clause

{pigeon_tem_comms-0.3.0 → pigeon_tem_comms-0.4.1}/pigeon_tem_comms.egg-info/SOURCES.txt

@@ -4,6 +4,8 @@ pyproject.toml
 TEM_comms/__init__.py
 TEM_comms/buffer.py
 TEM_comms/camera.py
+TEM_comms/montage.py
+TEM_comms/qc.py
 TEM_comms/scope.py
 TEM_comms/ui.py
 TEM_comms/stage/__init__.py
@@ -19,5 +21,6 @@ pigeon_tem_comms.egg-info/entry_points.txt
 pigeon_tem_comms.egg-info/requires.txt
 pigeon_tem_comms.egg-info/top_level.txt
 tests/test_buffer.py
+tests/test_qc.py
 tests/test_scope_command.py
 tests/test_ui.py

pigeon_tem_comms-0.4.1/pigeon_tem_comms.egg-info/entry_points.txt

@@ -0,0 +1,2 @@
+[pigeon.msgs]
+msgs = TEM_comms:topics

{pigeon_tem_comms-0.3.0 → pigeon_tem_comms-0.4.1}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "pigeon-tem-comms"
-version = "0.3.0"
+version = "0.4.1"
 authors = [
   { name="Cameron Devine", email="cameron.devine@alleninstitute.org" },
 ]
@@ -21,7 +21,7 @@ classifiers = [
 ]
 
 [project.entry-points."pigeon.msgs"]
-msgs = "TEM_comms:msgs"
+msgs = "TEM_comms:topics"
 
 [project.urls]
 Homepage = "https://github.com/AllenInstitute/TEM_comms"

pigeon_tem_comms-0.4.1/tests/test_qc.py

@@ -0,0 +1,8 @@
+from TEM_comms.qc import Status
+from pydantic import ValidationError
+import pytest
+
+
+def test_bad_status():
+    with pytest.raises(ValidationError):
+        Status(state="BAD")

pigeon_tem_comms-0.3.0/pigeon_tem_comms.egg-info/entry_points.txt

@@ -1,2 +0,0 @@
-[pigeon.msgs]
-msgs = TEM_comms:msgs