piblin 0.0.1__tar.gz

piblin-0.0.1/LICENSE

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+MIT License
+
+Copyright (c) 2024 3M
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

piblin-0.0.1/PKG-INFO

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+Metadata-Version: 2.2
+Name: piblin
+Version: 0.0.1
+Summary: Measurement data science functionality
+Author: Bryce Williams, Joel Patrow, Kyle Kalstabakken, Mahsa Lotfollahi
+Author-email: Matthew John Mills <mmills2@mmm.com>, Douglas Elmore <dlelmore@mmm.com>, Alex Bourque <abourque@mmm.com>, Alessandro Perego <aperego@mmm.com>, Maryam Pardakhti <mpardakhti@mmm.com>, Bjorn Melin <bmelin@mmm.com>, Bryan Cote <bcote@mmm.com>, Cole Stapleton <cstapleton@mmm.com>
+License: Proprietary
+Project-URL: Source, https://github.com/3mcloud/piblin
+Project-URL: Issues, https://github.com/3mcloud/piblin/issues
+Project-URL: Changelog, https://github.com/3mcloud/piblin/blob/main/CHANGELOG.md
+Classifier: Development Status :: 1 - Planning
+Classifier: Intended Audience :: Science/Research
+Classifier: Natural Language :: English
+Classifier: Operating System :: OS Independent
+Classifier: Topic :: Scientific/Engineering :: Chemistry
+Classifier: Topic :: Scientific/Engineering :: Physics
+Classifier: Topic :: Scientific/Engineering :: Information Analysis
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: License :: OSI Approved :: MIT License
+Requires-Python: <3.13,>=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: matplotlib==3.10.0
+Requires-Dist: numpy==1.26.4
+Requires-Dist: scipy==1.15.1
+Requires-Dist: pandas==2.2.3
+Provides-Extra: tests
+Requires-Dist: pytest==8.3.4; extra == "tests"
+Requires-Dist: pytest-mpl==0.17.0; extra == "tests"
+Requires-Dist: pytest-cov==6.0.0; extra == "tests"
+Requires-Dist: pytest-html==4.1.1; extra == "tests"
+
+# piblin
+### A Framework for Measurement Data Science

piblin-0.0.1/README.md

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+# piblin
+### A Framework for Measurement Data Science

piblin-0.0.1/pyproject.toml

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+[build-system]
+requires = ["setuptools==75.8.0", "setuptools-git-versioning >= 2"]
+build-backend = "setuptools.build_meta"
+
+[tool.setuptools-git-versioning]
+enabled = true
+
+[project]
+name = "piblin"
+authors = [
+    { name = "Matthew John Mills", email = "mmills2@mmm.com" },
+    { name = "Douglas Elmore", email = "dlelmore@mmm.com" },
+    { name = "Alex Bourque", email = "abourque@mmm.com" },
+    { name = "Bryce Williams" },
+    { name = "Joel Patrow" },
+    { name = "Kyle Kalstabakken" },
+    { name = "Mahsa Lotfollahi" },
+    { name = "Alessandro Perego", email = "aperego@mmm.com" },
+    { name = "Maryam Pardakhti", email = "mpardakhti@mmm.com" },
+    { name = "Bjorn Melin", email = "bmelin@mmm.com" },
+    { name = "Bryan Cote", email = "bcote@mmm.com" },
+    { name = "Cole Stapleton", email = "cstapleton@mmm.com" },
+]
+description = "Measurement data science functionality"
+readme = "README.md"
+dynamic = ["version"]
+requires-python = ">=3.10, <3.13"
+
+license = { text = "Proprietary" }
+classifiers = [
+    "Development Status :: 1 - Planning",
+    "Intended Audience :: Science/Research",
+    "Natural Language :: English",
+    "Operating System :: OS Independent",
+    "Topic :: Scientific/Engineering :: Chemistry",
+    "Topic :: Scientific/Engineering :: Physics",
+    "Topic :: Scientific/Engineering :: Information Analysis",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "License :: OSI Approved :: MIT License",
+]
+
+dependencies = [
+    "matplotlib ==3.10.0",
+    "numpy ==1.26.4",
+    "scipy ==1.15.1",
+    "pandas ==2.2.3",
+]
+
+[project.urls]
+Source = "https://github.com/3mcloud/piblin"
+Issues = "https://github.com/3mcloud/piblin/issues"
+Changelog = "https://github.com/3mcloud/piblin/blob/main/CHANGELOG.md"
+
+
+[project.optional-dependencies]
+tests = [
+    "pytest==8.3.4",
+    "pytest-mpl==0.17.0",
+    "pytest-cov==6.0.0",
+    "pytest-html==4.1.1",
+]
+
+[tool.setuptools.packages.find]
+where = ["src"]

piblin-0.0.1/setup.cfg

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+[egg_info]
+tag_build = 
+tag_date = 0
+

piblin-0.0.1/setup.py

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+from setuptools import setup
+
+setup()

piblin-0.0.1/src/piblin/__init__.py

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+"""(C)orporate (R)esearch (A)nalytical (L)aboratory (D)ata (S)cience
+
+Data science tools produced as part of the R&D Data Analytics (gALAxy)
+project of the 3M Corporate Research Analytical Laboratory (CRAL).
+
+This code forms the basis for a number of notebook and UI applications and
+can be used in the IPython, Jupyter or Databricks environments for
+interactive problem-solving. The package functionality which is intended to
+be public is available by importing from the following subpackages of
+cralds.
+
+Packages
+--------
+
+piblin.data - Represent analytical datasets and hierarchical collections thereof.
+piblin.dataio - Read/write hierarchically structured collections of datasets to/from files.
+piblin.transform - Transform collections of datasets.
+"""
+import numpy as np
+
+np.set_printoptions(threshold=0,
+                    precision=4,
+                    edgeitems=2,
+                    suppress=True,
+                    linewidth=10000,
+                    sign="+",
+                    floatmode="fixed")

piblin-0.0.1/src/piblin/data/__init__.py

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+from .data_collections.measurement import Measurement
+from .data_collections.measurement_set import MeasurementSet
+from .data_collections.consistent_measurement_set import ConsistentMeasurementSet
+from .data_collections.tidy_measurement_set import TidyMeasurementSet
+from .data_collections.experiment import Experiment
+from .data_collections.experiment_set import ExperimentSet
+from .data_collections.tabular_measurement_set import TabularMeasurementSet
+
+from .datasets.roi import LinearRegion, CompoundRegion
+from .datasets.abc.dataset import Dataset
+from .datasets.abc.unambiguous_datasets.unambiguous_dataset import UnambiguousDataset
+from .datasets.abc.unambiguous_datasets.one_dimensional_unambiguous_dataset import OneDimensionalUnambiguousDataset
+from .datasets.abc.split_datasets import SplitDataset
+from .datasets.abc.split_datasets.zero_dimensional_dataset import ZeroDimensionalDataset
+from .datasets.abc.split_datasets.one_dimensional_dataset import OneDimensionalDataset
+from .datasets.abc.split_datasets.two_dimensional_dataset import TwoDimensionalDataset
+from .datasets.abc.split_datasets.three_dimensional_dataset import ThreeDimensionalDataset
+from .datasets.abc.split_datasets.one_dimensional_composite_dataset import OneDimensionalCompositeDataset
+from .datasets.abc.split_datasets.histogram import Histogram
+from .datasets.abc.split_datasets.distribution import Distribution

piblin-0.0.1/src/piblin/data/data_collections/__init__.py

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+"""
+Package: piblin.data.data_collections - Hierarchical organization of measurements (data and metadata).
+
+Modules
+-------
+experiment - Classes abstracting the concept of a scientific experiment.
+measurement - Classes abstracting the concept of a scientific measurement.
+measurement_set - Collections of scientific measurements and experiments.
+
+Functions
+---------
+dict_repr - Return eval()-able string representation of a dict.
+dict_str - Return human-readable representation of a dict.
+"""
+
+
+def dict_repr(dict_):
+    """Return eval()-able string representation of a dict.
+
+    Parameters
+    ----------
+    dict_ : dict
+        The dictionary to convert to an eval()-able string.
+
+    Notes
+    -----
+    Expects dictionary keys to be strings.
+    """
+    output = "{"
+    for key, value in dict_.items():
+
+        key_str = "\"" + key + "\""
+
+        if isinstance(value, str):
+            value_str = "\"" + value + "\""
+        else:
+            value_str = str(value)
+
+        output += key_str + ": " + value_str + ", "
+    return output[:-2] + "}"
+
+
+def dict_str(dict_, title="", whitespace=None):
+    """Return human-readable representation of a dict.
+
+    Parameters
+    ----------
+    dict_ : dict
+        The dictionary to convert to a human-readable representation.
+    title : str
+        A string to use for the table title.
+    whitespace : str, None
+        Whether to add a tab in front of each key-value pair string.
+
+    Returns
+    -------
+    output : str
+        A human-readable representation of the dict.
+    """
+    # output = title + "\n" + "-"*len(title) + "\n"
+    output = f"{title}:\n\n"
+    for key, value in dict_.items():
+        if whitespace:
+            output += whitespace
+        output += str(key) + " = " + str(value) + "\n"
+    return output