phytclust 0.1.0__tar.gz

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Files changed (43) hide show
  1. phytclust-0.1.0/CHANGELOG.md +18 -0
  2. phytclust-0.1.0/LICENSE +674 -0
  3. phytclust-0.1.0/MANIFEST.in +3 -0
  4. phytclust-0.1.0/PKG-INFO +786 -0
  5. phytclust-0.1.0/README.md +79 -0
  6. phytclust-0.1.0/pyproject.toml +64 -0
  7. phytclust-0.1.0/setup.cfg +4 -0
  8. phytclust-0.1.0/src/phytclust/__init__.py +9 -0
  9. phytclust-0.1.0/src/phytclust/__main__.py +4 -0
  10. phytclust-0.1.0/src/phytclust/algo/__init__.py +3 -0
  11. phytclust-0.1.0/src/phytclust/algo/bins.py +30 -0
  12. phytclust-0.1.0/src/phytclust/algo/bootstrap_stability.py +160 -0
  13. phytclust-0.1.0/src/phytclust/algo/core.py +442 -0
  14. phytclust-0.1.0/src/phytclust/algo/dp.py +287 -0
  15. phytclust-0.1.0/src/phytclust/algo/scoring.py +331 -0
  16. phytclust-0.1.0/src/phytclust/cli/__init__.py +3 -0
  17. phytclust-0.1.0/src/phytclust/cli/__main__.py +5 -0
  18. phytclust-0.1.0/src/phytclust/cli/_cli.py +461 -0
  19. phytclust-0.1.0/src/phytclust/cli/ascii_logo.txt +8 -0
  20. phytclust-0.1.0/src/phytclust/io/__init__.py +0 -0
  21. phytclust-0.1.0/src/phytclust/io/save_results.py +67 -0
  22. phytclust-0.1.0/src/phytclust/metrics/__init__.py +39 -0
  23. phytclust-0.1.0/src/phytclust/metrics/indices.py +179 -0
  24. phytclust-0.1.0/src/phytclust/phytclust_logo_colour.png +0 -0
  25. phytclust-0.1.0/src/phytclust/phytclust_logo_colour_text_only.png +0 -0
  26. phytclust-0.1.0/src/phytclust/selection/__init__.py +0 -0
  27. phytclust-0.1.0/src/phytclust/selection/pd_representatives.py +175 -0
  28. phytclust-0.1.0/src/phytclust/small_logo.png +0 -0
  29. phytclust-0.1.0/src/phytclust/utils/__init__.py +15 -0
  30. phytclust-0.1.0/src/phytclust/utils/tree.py +96 -0
  31. phytclust-0.1.0/src/phytclust/validation.py +209 -0
  32. phytclust-0.1.0/src/phytclust/viz/__init__.py +0 -0
  33. phytclust-0.1.0/src/phytclust/viz/cluster_plot.py +80 -0
  34. phytclust-0.1.0/src/phytclust/viz/plotting.py +679 -0
  35. phytclust-0.1.0/src/phytclust/viz/scores_plot.py +192 -0
  36. phytclust-0.1.0/src/phytclust.egg-info/PKG-INFO +786 -0
  37. phytclust-0.1.0/src/phytclust.egg-info/SOURCES.txt +41 -0
  38. phytclust-0.1.0/src/phytclust.egg-info/dependency_links.txt +1 -0
  39. phytclust-0.1.0/src/phytclust.egg-info/entry_points.txt +2 -0
  40. phytclust-0.1.0/src/phytclust.egg-info/requires.txt +15 -0
  41. phytclust-0.1.0/src/phytclust.egg-info/top_level.txt +1 -0
  42. phytclust-0.1.0/tests/test_api.py +33 -0
  43. phytclust-0.1.0/tests/test_cli.py +37 -0
phytclust-0.1.0/CHANGELOG.md ADDED
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+ # Changelog
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+ All notable changes to _PhytClust_ will be documented in this file.
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+
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+ The format follows [Keep a Changelog](https://keepachangelog.com/)
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+ and the project adheres to [Semantic Versioning](https://semver.org/).
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+
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+ ## [Unreleased]
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+
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+ ### Added
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+
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+ ### Changed
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+
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+ ### Fixed
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+ ## [0.1.0] – (add date)
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+
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+ ### Added