physioex 1.0.0.dev1__tar.gz → 1.0.0.dev3__tar.gz

{physioex-1.0.0.dev1 → physioex-1.0.0.dev3}/PKG-INFO

@@ -1,46 +1,69 @@
 Metadata-Version: 2.1
 Name: physioex
-Version: 1.0.0.dev1
+Version: 1.0.0.dev3
 Summary: A python package for explainable sleep staging via deep learning
 Author-email: Guido Gagliardi <guido.gagliardi@phd.unipi.it>
+License: MIT License
+        
+        Copyright (c) 2023 Guido Gagliardi
+        
+        Permission is hereby granted, free of charge, to any person obtaining a copy
+        of this software and associated documentation files (the "Software"), to deal
+        in the Software without restriction, including without limitation the rights
+        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+        copies of the Software, and to permit persons to whom the Software is
+        furnished to do so, subject to the following conditions:
+        
+        The above copyright notice and this permission notice shall be included in all
+        copies or substantial portions of the Software.
+        
+        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+        LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+        SOFTWARE.
+        
+Project-URL: Homepage, https://github.com/guidogagl/physioex
+Project-URL: Documentation, https://guidogagl.github.io/physioex
+Project-URL: Repository, https://github.com/guidogagl/physioex
+Project-URL: Issues, https://github.com/guidogagl/physioex/issues
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: pyyaml==6.0.2
-Requires-Dist: argparse
-Requires-Dist: loguru==0.7.2
-Requires-Dist: pkg_resources
-Requires-Dist: some_other_dependency
-Requires-Dist: boto3==1.35.3
-Requires-Dist: botocore==1.35.3
-Requires-Dist: braindecode==0.8.1
-Requires-Dist: captum==0.7.0
-Requires-Dist: dirhash==0.5.0
-Requires-Dist: h5py==3.11.0
-Requires-Dist: joblib==1.4.2
-Requires-Dist: lightning==2.4.0
-Requires-Dist: matplotlib==3.9.2
-Requires-Dist: npy_append_array==0.9.16
-Requires-Dist: numpy==2.1.1
-Requires-Dist: pandas==2.2.3
-Requires-Dist: paramiko==3.5.0
-Requires-Dist: psg_utils==0.1.6
-Requires-Dist: pyEDFlib==0.1.38
-Requires-Dist: pytorch_lightning==2.4.0
-Requires-Dist: pytorch_metric_learning==2.6.0
-Requires-Dist: pyunpack==0.3
-Requires-Dist: rarfile==4.2
-Requires-Dist: requests==2.32.3
-Requires-Dist: scikit_learn==1.5.2
-Requires-Dist: scipy==1.14.1
-Requires-Dist: seaborn==0.13.2
-Requires-Dist: setuptools==72.1.0
-Requires-Dist: torch==2.4.0
-Requires-Dist: torchmetrics==1.4.1
-Requires-Dist: tqdm==4.66.5
-Requires-Dist: wfdb==4.1.2
+Requires-Dist: boto3
+Requires-Dist: botocore
+Requires-Dist: braindecode
+Requires-Dist: captum
+Requires-Dist: dirhash
+Requires-Dist: h5py
+Requires-Dist: joblib
+Requires-Dist: lightning
+Requires-Dist: loguru
+Requires-Dist: matplotlib
+Requires-Dist: npy_append_array
+Requires-Dist: numpy
+Requires-Dist: pandas
+Requires-Dist: paramiko
+Requires-Dist: psg_utils
+Requires-Dist: pyEDFlib
+Requires-Dist: pytorch_lightning
+Requires-Dist: pytorch_metric_learning
+Requires-Dist: pyunpack
+Requires-Dist: PyYAML
+Requires-Dist: rarfile
+Requires-Dist: requests
+Requires-Dist: scikit_learn
+Requires-Dist: scipy
+Requires-Dist: seaborn
+Requires-Dist: setuptools
+Requires-Dist: torch
+Requires-Dist: torchmetrics
+Requires-Dist: tqdm
+Requires-Dist: wfdb
 
 <div style = "text-align: center;">
-<img src="docs/assets/images/logo.svg" width = "250px", alt="PhysioEx Logo">
+<img src="https://raw.githubusercontent.com/guidogagl/physioex/refs/heads/main/docs/assets/images/logo.svg" width = "250px", alt="PhysioEx Logo">
 
 <h1> PhysioEx </h1>
 </div>
@@ -73,19 +96,29 @@ For the public available datasets ( DCSM, HMC ) PhysioEx takes care of automatic
 
 ## Installation guidelines
 
-1. **Clone the Repository:**
-```bash
-   git clone https://github.com/guidogagl/physioex.git
-   cd physioex
-```
-2. **Create a Virtual Environment (Optional but Recommended)**
+### Create a Virtual Environment (Optional but Recommended)
+
 ```bash
     conda create -n physioex python==3.10
     conda activate physioex
     conda install pip
     pip install --upgrade pip  # On Windows, use `venv\Scripts\activate`
 ```
-3. **Install Dependencies and Package in Development Mode**
+### Install via pip
+
+1. **Install PhysioEx from PyPI:**
+```bash
+pip install physioex
+```
+
+### Install from source
+1. **Clone the Repository:**
+```bash
+   git clone https://github.com/guidogagl/physioex.git
+   cd physioex
+```
+
+2. **Install Dependencies and Package in Development Mode**
 ```bash
     pip install -e .
 ```

{physioex-1.0.0.dev1 → physioex-1.0.0.dev3}/README.md

@@ -1,5 +1,5 @@
 <div style = "text-align: center;">
-<img src="docs/assets/images/logo.svg" width = "250px", alt="PhysioEx Logo">
+<img src="https://raw.githubusercontent.com/guidogagl/physioex/refs/heads/main/docs/assets/images/logo.svg" width = "250px", alt="PhysioEx Logo">
 
 <h1> PhysioEx </h1>
 </div>
@@ -32,19 +32,29 @@ For the public available datasets ( DCSM, HMC ) PhysioEx takes care of automatic
 
 ## Installation guidelines
 
-1. **Clone the Repository:**
-```bash
-   git clone https://github.com/guidogagl/physioex.git
-   cd physioex
-```
-2. **Create a Virtual Environment (Optional but Recommended)**
+### Create a Virtual Environment (Optional but Recommended)
+
 ```bash
     conda create -n physioex python==3.10
     conda activate physioex
     conda install pip
     pip install --upgrade pip  # On Windows, use `venv\Scripts\activate`
 ```
-3. **Install Dependencies and Package in Development Mode**
+### Install via pip
+
+1. **Install PhysioEx from PyPI:**
+```bash
+pip install physioex
+```
+
+### Install from source
+1. **Clone the Repository:**
+```bash
+   git clone https://github.com/guidogagl/physioex.git
+   cd physioex
+```
+
+2. **Install Dependencies and Package in Development Mode**
 ```bash
     pip install -e .
 ```

{physioex-1.0.0.dev1 → physioex-1.0.0.dev3}/physioex.egg-info/PKG-INFO

@@ -1,46 +1,69 @@
 Metadata-Version: 2.1
 Name: physioex
-Version: 1.0.0.dev1
+Version: 1.0.0.dev3
 Summary: A python package for explainable sleep staging via deep learning
 Author-email: Guido Gagliardi <guido.gagliardi@phd.unipi.it>
+License: MIT License
+        
+        Copyright (c) 2023 Guido Gagliardi
+        
+        Permission is hereby granted, free of charge, to any person obtaining a copy
+        of this software and associated documentation files (the "Software"), to deal
+        in the Software without restriction, including without limitation the rights
+        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+        copies of the Software, and to permit persons to whom the Software is
+        furnished to do so, subject to the following conditions:
+        
+        The above copyright notice and this permission notice shall be included in all
+        copies or substantial portions of the Software.
+        
+        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+        LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+        SOFTWARE.
+        
+Project-URL: Homepage, https://github.com/guidogagl/physioex
+Project-URL: Documentation, https://guidogagl.github.io/physioex
+Project-URL: Repository, https://github.com/guidogagl/physioex
+Project-URL: Issues, https://github.com/guidogagl/physioex/issues
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: pyyaml==6.0.2
-Requires-Dist: argparse
-Requires-Dist: loguru==0.7.2
-Requires-Dist: pkg_resources
-Requires-Dist: some_other_dependency
-Requires-Dist: boto3==1.35.3
-Requires-Dist: botocore==1.35.3
-Requires-Dist: braindecode==0.8.1
-Requires-Dist: captum==0.7.0
-Requires-Dist: dirhash==0.5.0
-Requires-Dist: h5py==3.11.0
-Requires-Dist: joblib==1.4.2
-Requires-Dist: lightning==2.4.0
-Requires-Dist: matplotlib==3.9.2
-Requires-Dist: npy_append_array==0.9.16
-Requires-Dist: numpy==2.1.1
-Requires-Dist: pandas==2.2.3
-Requires-Dist: paramiko==3.5.0
-Requires-Dist: psg_utils==0.1.6
-Requires-Dist: pyEDFlib==0.1.38
-Requires-Dist: pytorch_lightning==2.4.0
-Requires-Dist: pytorch_metric_learning==2.6.0
-Requires-Dist: pyunpack==0.3
-Requires-Dist: rarfile==4.2
-Requires-Dist: requests==2.32.3
-Requires-Dist: scikit_learn==1.5.2
-Requires-Dist: scipy==1.14.1
-Requires-Dist: seaborn==0.13.2
-Requires-Dist: setuptools==72.1.0
-Requires-Dist: torch==2.4.0
-Requires-Dist: torchmetrics==1.4.1
-Requires-Dist: tqdm==4.66.5
-Requires-Dist: wfdb==4.1.2
+Requires-Dist: boto3
+Requires-Dist: botocore
+Requires-Dist: braindecode
+Requires-Dist: captum
+Requires-Dist: dirhash
+Requires-Dist: h5py
+Requires-Dist: joblib
+Requires-Dist: lightning
+Requires-Dist: loguru
+Requires-Dist: matplotlib
+Requires-Dist: npy_append_array
+Requires-Dist: numpy
+Requires-Dist: pandas
+Requires-Dist: paramiko
+Requires-Dist: psg_utils
+Requires-Dist: pyEDFlib
+Requires-Dist: pytorch_lightning
+Requires-Dist: pytorch_metric_learning
+Requires-Dist: pyunpack
+Requires-Dist: PyYAML
+Requires-Dist: rarfile
+Requires-Dist: requests
+Requires-Dist: scikit_learn
+Requires-Dist: scipy
+Requires-Dist: seaborn
+Requires-Dist: setuptools
+Requires-Dist: torch
+Requires-Dist: torchmetrics
+Requires-Dist: tqdm
+Requires-Dist: wfdb
 
 <div style = "text-align: center;">
-<img src="docs/assets/images/logo.svg" width = "250px", alt="PhysioEx Logo">
+<img src="https://raw.githubusercontent.com/guidogagl/physioex/refs/heads/main/docs/assets/images/logo.svg" width = "250px", alt="PhysioEx Logo">
 
 <h1> PhysioEx </h1>
 </div>
@@ -73,19 +96,29 @@ For the public available datasets ( DCSM, HMC ) PhysioEx takes care of automatic
 
 ## Installation guidelines
 
-1. **Clone the Repository:**
-```bash
-   git clone https://github.com/guidogagl/physioex.git
-   cd physioex
-```
-2. **Create a Virtual Environment (Optional but Recommended)**
+### Create a Virtual Environment (Optional but Recommended)
+
 ```bash
     conda create -n physioex python==3.10
     conda activate physioex
     conda install pip
     pip install --upgrade pip  # On Windows, use `venv\Scripts\activate`
 ```
-3. **Install Dependencies and Package in Development Mode**
+### Install via pip
+
+1. **Install PhysioEx from PyPI:**
+```bash
+pip install physioex
+```
+
+### Install from source
+1. **Clone the Repository:**
+```bash
+   git clone https://github.com/guidogagl/physioex.git
+   cd physioex
+```
+
+2. **Install Dependencies and Package in Development Mode**
 ```bash
     pip install -e .
 ```

physioex-1.0.0.dev3/physioex.egg-info/requires.txt

@@ -0,0 +1,30 @@
+boto3
+botocore
+braindecode
+captum
+dirhash
+h5py
+joblib
+lightning
+loguru
+matplotlib
+npy_append_array
+numpy
+pandas
+paramiko
+psg_utils
+pyEDFlib
+pytorch_lightning
+pytorch_metric_learning
+pyunpack
+PyYAML
+rarfile
+requests
+scikit_learn
+scipy
+seaborn
+setuptools
+torch
+torchmetrics
+tqdm
+wfdb

physioex-1.0.0.dev3/pyproject.toml

@@ -0,0 +1,61 @@
+[build-system]
+requires = ["setuptools>=42", "wheel", "setuptools_scm[toml]>=6.0"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "physioex"
+version = "1.0.0.dev3"
+description = "A python package for explainable sleep staging via deep learning"
+readme = { file = "README.md", content-type = "text/markdown" }
+authors = [
+    { name = "Guido Gagliardi", email = "guido.gagliardi@phd.unipi.it" }
+]
+license = {file = "LICENSE"}
+dependencies = [
+    "boto3",
+    "botocore",
+    "braindecode",
+    "captum",
+    "dirhash",
+    "h5py",
+    "joblib",
+    "lightning",
+    "loguru",
+    "matplotlib",
+    "npy_append_array",
+    "numpy",
+    "pandas",
+    "paramiko",
+    "psg_utils",
+    "pyEDFlib",
+    "pytorch_lightning",
+    "pytorch_metric_learning",
+    "pyunpack",
+    "PyYAML",
+    "rarfile",
+    "requests",
+    "scikit_learn",
+    "scipy",
+    "seaborn",
+    "setuptools",
+    "torch",
+    "torchmetrics",
+    "tqdm",
+    "wfdb"
+]
+
+[project.urls]
+Homepage = "https://github.com/guidogagl/physioex"
+Documentation = "https://guidogagl.github.io/physioex"
+Repository = "https://github.com/guidogagl/physioex"
+Issues = "https://github.com/guidogagl/physioex/issues"
+
+[tool.setuptools.packages.find]
+where = ["."]
+include = ["physioex*"]
+
+[project.scripts]
+train = "physioex.train.bin.train:train_script"
+finetune = "physioex.train.bin.finetune:finetune_script"
+test_model = "physioex.train.bin.test:test_script"
+preprocess = "physioex.preprocess.bin.main:main"

physioex-1.0.0.dev1/physioex.egg-info/requires.txt

@@ -1,33 +0,0 @@
-pyyaml==6.0.2
-argparse
-loguru==0.7.2
-pkg_resources
-some_other_dependency
-boto3==1.35.3
-botocore==1.35.3
-braindecode==0.8.1
-captum==0.7.0
-dirhash==0.5.0
-h5py==3.11.0
-joblib==1.4.2
-lightning==2.4.0
-matplotlib==3.9.2
-npy_append_array==0.9.16
-numpy==2.1.1
-pandas==2.2.3
-paramiko==3.5.0
-psg_utils==0.1.6
-pyEDFlib==0.1.38
-pytorch_lightning==2.4.0
-pytorch_metric_learning==2.6.0
-pyunpack==0.3
-rarfile==4.2
-requests==2.32.3
-scikit_learn==1.5.2
-scipy==1.14.1
-seaborn==0.13.2
-setuptools==72.1.0
-torch==2.4.0
-torchmetrics==1.4.1
-tqdm==4.66.5
-wfdb==4.1.2

physioex-1.0.0.dev1/pyproject.toml

@@ -1,56 +0,0 @@
-[build-system]
-requires = ["setuptools>=42", "wheel", "setuptools_scm[toml]>=6.0"]
-build-backend = "setuptools.build_meta"
-
-[project]
-name = "physioex"
-version = "1.0.0.dev1"
-description = "A python package for explainable sleep staging via deep learning"
-readme = { file = "README.md", content-type = "text/markdown" }
-authors = [
-    { name = "Guido Gagliardi", email = "guido.gagliardi@phd.unipi.it" }
-]
-dependencies = [
-    "pyyaml==6.0.2",
-    "argparse",
-    "loguru==0.7.2",
-    "pkg_resources",
-    "some_other_dependency",
-    "boto3==1.35.3",
-    "botocore==1.35.3",
-    "braindecode==0.8.1",
-    "captum==0.7.0",
-    "dirhash==0.5.0",
-    "h5py==3.11.0",
-    "joblib==1.4.2",
-    "lightning==2.4.0",
-    "matplotlib==3.9.2",
-    "npy_append_array==0.9.16",
-    "numpy==2.1.1",
-    "pandas==2.2.3",
-    "paramiko==3.5.0",
-    "psg_utils==0.1.6",
-    "pyEDFlib==0.1.38",
-    "pytorch_lightning==2.4.0",
-    "pytorch_metric_learning==2.6.0",
-    "pyunpack==0.3",
-    "rarfile==4.2",
-    "requests==2.32.3",
-    "scikit_learn==1.5.2",
-    "scipy==1.14.1",
-    "seaborn==0.13.2",
-    "setuptools==72.1.0",
-    "torch==2.4.0",
-    "torchmetrics==1.4.1",
-    "tqdm==4.66.5",
-    "wfdb==4.1.2"
-]
-
-[tool.setuptools]
-packages = { find = { where = ["."], include = ["physioex*"] } }
-
-[project.scripts]
-train = "physioex.train.bin.train:train_script"
-finetune = "physioex.train.bin.finetune:finetune_script"
-test_model = "physioex.train.bin.test:test_script"
-preprocess = "physioex.preprocess.bin.main:main"