phylogenie 2.1.6__tar.gz → 2.1.7__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {phylogenie-2.1.6 → phylogenie-2.1.7}/PKG-INFO +3 -1
- {phylogenie-2.1.6 → phylogenie-2.1.7}/README.md +2 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/tree.py +9 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/pyproject.toml +1 -1
- {phylogenie-2.1.6 → phylogenie-2.1.7}/LICENSE.txt +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/__init__.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/generators/__init__.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/generators/alisim.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/generators/configs.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/generators/dataset.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/generators/factories.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/generators/trees.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/generators/typeguards.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/io.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/main.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/msa.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/py.typed +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/skyline/__init__.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/skyline/matrix.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/skyline/parameter.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/skyline/vector.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/treesimulator/__init__.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/treesimulator/events/__init__.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/treesimulator/events/contact_tracing.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/treesimulator/events/core.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/treesimulator/events/mutations.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/treesimulator/gillespie.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/treesimulator/model.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/typeguards.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/typings.py +0 -0
- {phylogenie-2.1.6 → phylogenie-2.1.7}/phylogenie/utils.py +0 -0
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.1
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Name: phylogenie
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Version: 2.1.
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Version: 2.1.7
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Summary: Generate phylogenetic datasets with minimal setup effort
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Author: Gabriele Marino
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Author-email: gabmarino.8601@gmail.com
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@@ -24,6 +24,8 @@ Description-Content-Type: text/markdown
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[](https://iqtree.github.io/doc/AliSim)
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[](https://pypi.org/project/phylogenie/)
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Phylogenie is a [Python](https://www.python.org/) package designed to easily simulate phylogenetic datasets—such as trees and multiple sequence alignments (MSAs)—with minimal setup effort. Simply specify the distributions from which your parameters should be sampled, and Phylogenie will handle the rest!
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[](https://iqtree.github.io/doc/AliSim)
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[](https://pypi.org/project/phylogenie/)
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Phylogenie is a [Python](https://www.python.org/) package designed to easily simulate phylogenetic datasets—such as trees and multiple sequence alignments (MSAs)—with minimal setup effort. Simply specify the distributions from which your parameters should be sampled, and Phylogenie will handle the rest!
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@@ -36,6 +36,15 @@ class Tree:
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if node is not None:
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node._children.append(self)
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def inorder_traversal(self) -> Iterator["Tree"]:
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if self.children and len(self.children) != 2:
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raise ValueError("Inorder traversal is only defined for binary trees.")
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if self.children:
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yield from self.children[0].inorder_traversal()
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yield self
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if self.children:
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yield from self.children[1].inorder_traversal()
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def preorder_traversal(self) -> Iterator["Tree"]:
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yield self
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for child in self.children:
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