phylogenie 2.1.20__tar.gz → 2.1.21__tar.gz

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  1. {phylogenie-2.1.20 → phylogenie-2.1.21}/PKG-INFO +1 -1
  2. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/__init__.py +2 -2
  3. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/utils.py +1 -1
  4. {phylogenie-2.1.20 → phylogenie-2.1.21}/pyproject.toml +1 -1
  5. {phylogenie-2.1.20 → phylogenie-2.1.21}/LICENSE.txt +0 -0
  6. {phylogenie-2.1.20 → phylogenie-2.1.21}/README.md +0 -0
  7. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/draw.py +0 -0
  8. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/generators/__init__.py +0 -0
  9. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/generators/alisim.py +0 -0
  10. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/generators/configs.py +0 -0
  11. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/generators/dataset.py +0 -0
  12. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/generators/factories.py +0 -0
  13. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/generators/trees.py +0 -0
  14. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/generators/typeguards.py +0 -0
  15. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/io.py +0 -0
  16. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/main.py +0 -0
  17. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/models.py +0 -0
  18. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/msa.py +0 -0
  19. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/py.typed +0 -0
  20. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/skyline/__init__.py +0 -0
  21. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/skyline/matrix.py +0 -0
  22. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/skyline/parameter.py +0 -0
  23. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/skyline/vector.py +0 -0
  24. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/tree.py +0 -0
  25. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/treesimulator/__init__.py +0 -0
  26. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/treesimulator/events/__init__.py +0 -0
  27. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/treesimulator/events/contact_tracing.py +0 -0
  28. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/treesimulator/events/core.py +0 -0
  29. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/treesimulator/events/mutations.py +0 -0
  30. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/treesimulator/features.py +0 -0
  31. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/treesimulator/gillespie.py +0 -0
  32. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/treesimulator/model.py +0 -0
  33. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/typeguards.py +0 -0
  34. {phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/typings.py +0 -0
{phylogenie-2.1.20 → phylogenie-2.1.21}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: phylogenie
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- Version: 2.1.20
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+ Version: 2.1.21
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  Summary: Generate phylogenetic datasets with minimal setup effort
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  Author: Gabriele Marino
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  Author-email: gabmarino.8601@gmail.com
{phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/__init__.py RENAMED
@@ -48,7 +48,7 @@ from phylogenie.treesimulator import (
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  )
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  from phylogenie.utils import (
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  compute_colless_index,
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- compute_mean_pairwise_distance,
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+ compute_mean_leaf_pairwise_distance,
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  compute_sackin_index,
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  get_distance,
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  get_mrca,
@@ -106,7 +106,7 @@ __all__ = [
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  "Coloring",
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  "draw_tree",
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  "compute_colless_index",
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- "compute_mean_pairwise_distance",
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+ "compute_mean_leaf_pairwise_distance",
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  "compute_sackin_index",
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  "get_distance",
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  "get_mrca",
{phylogenie-2.1.20 → phylogenie-2.1.21}/phylogenie/utils.py RENAMED
@@ -149,7 +149,7 @@ def compute_colless_index(tree: Tree, normalize: bool = False) -> float:
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  return colless_index
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- def compute_mean_pairwise_distance(tree: Tree) -> float:
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+ def compute_mean_leaf_pairwise_distance(tree: Tree) -> float:
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  """
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  Compute the mean pairwise distance between all pairs of leaves in the tree.
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{phylogenie-2.1.20 → phylogenie-2.1.21}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "phylogenie"
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- version = "2.1.20"
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+ version = "2.1.21"
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  description = "Generate phylogenetic datasets with minimal setup effort"
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  authors = ["Gabriele Marino <gabmarino.8601@gmail.com>"]
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  readme = "README.md"
{phylogenie-2.1.20 → phylogenie-2.1.21}/LICENSE.txt RENAMED
File without changes
{phylogenie-2.1.20 → phylogenie-2.1.21}/README.md RENAMED
File without changes