phylogenie 2.1.18__tar.gz → 2.1.19__tar.gz

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  1. {phylogenie-2.1.18 → phylogenie-2.1.19}/PKG-INFO +1 -1
  2. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/plot.py +2 -11
  3. {phylogenie-2.1.18 → phylogenie-2.1.19}/pyproject.toml +1 -1
  4. {phylogenie-2.1.18 → phylogenie-2.1.19}/LICENSE.txt +0 -0
  5. {phylogenie-2.1.18 → phylogenie-2.1.19}/README.md +0 -0
  6. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/__init__.py +0 -0
  7. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/generators/__init__.py +0 -0
  8. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/generators/alisim.py +0 -0
  9. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/generators/configs.py +0 -0
  10. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/generators/dataset.py +0 -0
  11. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/generators/factories.py +0 -0
  12. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/generators/trees.py +0 -0
  13. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/generators/typeguards.py +0 -0
  14. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/io.py +0 -0
  15. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/main.py +0 -0
  16. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/models.py +0 -0
  17. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/msa.py +0 -0
  18. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/py.typed +0 -0
  19. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/skyline/__init__.py +0 -0
  20. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/skyline/matrix.py +0 -0
  21. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/skyline/parameter.py +0 -0
  22. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/skyline/vector.py +0 -0
  23. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/tree.py +0 -0
  24. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/treesimulator/__init__.py +0 -0
  25. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/treesimulator/events/__init__.py +0 -0
  26. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/treesimulator/events/contact_tracing.py +0 -0
  27. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/treesimulator/events/core.py +0 -0
  28. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/treesimulator/events/mutations.py +0 -0
  29. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/treesimulator/features.py +0 -0
  30. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/treesimulator/gillespie.py +0 -0
  31. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/treesimulator/model.py +0 -0
  32. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/typeguards.py +0 -0
  33. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/typings.py +0 -0
  34. {phylogenie-2.1.18 → phylogenie-2.1.19}/phylogenie/utils.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: phylogenie
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- Version: 2.1.18
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+ Version: 2.1.19
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  Summary: Generate phylogenetic datasets with minimal setup effort
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  Author: Gabriele Marino
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  Author-email: gabmarino.8601@gmail.com
@@ -71,7 +71,7 @@ def plot_tree(
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  ]
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  if any(color_by not in node.features for node in tree):
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  legend_handles.append(
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- mpatches.Patch(color=default_color, label="None")
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+ mpatches.Patch(color=default_color, label="NA")
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  )
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  ax.legend(handles=legend_handles, title=color_by) # pyright: ignore
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@@ -88,12 +88,7 @@ def plot_tree(
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  }
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  if show_hist:
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- default_hist_axes_kwargs = {
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- "width": "25%",
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- "height": "25%",
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- "loc": "lower left",
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- "borderpad": 3,
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- }
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+ default_hist_axes_kwargs = {"width": "25%", "height": "25%"}
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  if hist_axes_kwargs is not None:
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  default_hist_axes_kwargs.update(hist_axes_kwargs)
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  hist_ax = inset_axes(ax, **default_hist_axes_kwargs) # pyright: ignore
@@ -108,10 +103,6 @@ def plot_tree(
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  ):
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  midpoint = (b0 + b1) / 2 # pyright: ignore
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  patch.set_facecolor(colormap(norm(midpoint))) # pyright: ignore
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-
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- hist_ax.set_xlabel(color_by.capitalize(), fontsize=8) # pyright: ignore
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- hist_ax.set_ylabel("Count", fontsize=8) # pyright: ignore
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- hist_ax.tick_params(axis="both", labelsize=6) # pyright: ignore
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  else:
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  sm = plt.cm.ScalarMappable(cmap=colormap, norm=norm)
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  ax.get_figure().colorbar(sm, ax=ax) # pyright: ignore
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "phylogenie"
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- version = "2.1.18"
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+ version = "2.1.19"
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  description = "Generate phylogenetic datasets with minimal setup effort"
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  authors = ["Gabriele Marino <gabmarino.8601@gmail.com>"]
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  readme = "README.md"
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