phylogenie 2.1.11__tar.gz → 2.1.13__tar.gz

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  1. {phylogenie-2.1.11 → phylogenie-2.1.13}/PKG-INFO +1 -1
  2. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/plot.py +1 -3
  3. {phylogenie-2.1.11 → phylogenie-2.1.13}/pyproject.toml +1 -1
  4. {phylogenie-2.1.11 → phylogenie-2.1.13}/LICENSE.txt +0 -0
  5. {phylogenie-2.1.11 → phylogenie-2.1.13}/README.md +0 -0
  6. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/__init__.py +0 -0
  7. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/generators/__init__.py +0 -0
  8. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/generators/alisim.py +0 -0
  9. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/generators/configs.py +0 -0
  10. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/generators/dataset.py +0 -0
  11. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/generators/factories.py +0 -0
  12. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/generators/trees.py +0 -0
  13. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/generators/typeguards.py +0 -0
  14. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/io.py +0 -0
  15. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/main.py +0 -0
  16. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/models.py +0 -0
  17. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/msa.py +0 -0
  18. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/py.typed +0 -0
  19. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/skyline/__init__.py +0 -0
  20. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/skyline/matrix.py +0 -0
  21. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/skyline/parameter.py +0 -0
  22. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/skyline/vector.py +0 -0
  23. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/tree.py +0 -0
  24. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/treesimulator/__init__.py +0 -0
  25. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/treesimulator/events/__init__.py +0 -0
  26. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/treesimulator/events/contact_tracing.py +0 -0
  27. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/treesimulator/events/core.py +0 -0
  28. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/treesimulator/events/mutations.py +0 -0
  29. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/treesimulator/features.py +0 -0
  30. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/treesimulator/gillespie.py +0 -0
  31. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/treesimulator/model.py +0 -0
  32. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/typeguards.py +0 -0
  33. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/typings.py +0 -0
  34. {phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/utils.py +0 -0
{phylogenie-2.1.11 → phylogenie-2.1.13}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: phylogenie
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- Version: 2.1.11
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+ Version: 2.1.13
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  Summary: Generate phylogenetic datasets with minimal setup effort
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  Author: Gabriele Marino
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  Author-email: gabmarino.8601@gmail.com
{phylogenie-2.1.11 → phylogenie-2.1.13}/phylogenie/plot.py RENAMED
@@ -5,7 +5,6 @@ import matplotlib.patches as mpatches
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  import matplotlib.pyplot as plt
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  from matplotlib.axes import Axes
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- from phylogenie import Tree
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  from phylogenie.tree import Tree
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  from phylogenie.utils import get_times
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@@ -60,8 +59,7 @@ def plot_tree(
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  colors = {node: colormap(norm(float(node.get(color_by)))) for node in tree}
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  sm = plt.cm.ScalarMappable(cmap=colormap, norm=norm)
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- fig = ax.get_figure()
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- fig.colorbar(sm, ax=ax, label=color_by) # pyright: ignore
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+ ax.get_figure().colorbar(sm, ax=ax) # pyright: ignore
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  else:
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  raise ValueError(
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  f"Unknown coloring method: {coloring}. Choices are {list(Coloring)}."
{phylogenie-2.1.11 → phylogenie-2.1.13}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "phylogenie"
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- version = "2.1.11"
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+ version = "2.1.13"
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  description = "Generate phylogenetic datasets with minimal setup effort"
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  authors = ["Gabriele Marino <gabmarino.8601@gmail.com>"]
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  readme = "README.md"
{phylogenie-2.1.11 → phylogenie-2.1.13}/LICENSE.txt RENAMED
File without changes
{phylogenie-2.1.11 → phylogenie-2.1.13}/README.md RENAMED
File without changes