phylogenie 2.0.6__tar.gz → 2.0.8__tar.gz

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Files changed (27) hide show
  1. {phylogenie-2.0.6 → phylogenie-2.0.8}/PKG-INFO +1 -1
  2. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/main.py +0 -4
  3. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/tree.py +0 -8
  4. {phylogenie-2.0.6 → phylogenie-2.0.8}/pyproject.toml +1 -1
  5. {phylogenie-2.0.6 → phylogenie-2.0.8}/LICENSE.txt +0 -0
  6. {phylogenie-2.0.6 → phylogenie-2.0.8}/README.md +0 -0
  7. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/__init__.py +0 -0
  8. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/generators/__init__.py +0 -0
  9. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/generators/alisim.py +0 -0
  10. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/generators/configs.py +0 -0
  11. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/generators/dataset.py +0 -0
  12. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/generators/factories.py +0 -0
  13. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/generators/trees.py +0 -0
  14. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/generators/typeguards.py +0 -0
  15. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/io.py +0 -0
  16. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/msa.py +0 -0
  17. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/py.typed +0 -0
  18. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/skyline/__init__.py +0 -0
  19. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/skyline/matrix.py +0 -0
  20. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/skyline/parameter.py +0 -0
  21. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/skyline/vector.py +0 -0
  22. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/treesimulator/__init__.py +0 -0
  23. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/treesimulator/events.py +0 -0
  24. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/treesimulator/gillespie.py +0 -0
  25. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/treesimulator/model.py +0 -0
  26. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/typeguards.py +0 -0
  27. {phylogenie-2.0.6 → phylogenie-2.0.8}/phylogenie/typings.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: phylogenie
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- Version: 2.0.6
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+ Version: 2.0.8
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  Summary: Generate phylogenetic datasets with minimal setup effort
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  Author: Gabriele Marino
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  Author-email: gabmarino.8601@gmail.com
@@ -37,7 +37,3 @@ def main() -> None:
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  args = parser.parse_args()
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  run(args.config_path)
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-
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-
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- if __name__ == "__main__":
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- run("/Users/gmarino/phylogenie/examples/5.BD-CT-Trees.yaml")
@@ -1,5 +1,4 @@
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  from collections.abc import Iterator
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- from typing import Any
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  class Tree:
@@ -8,7 +7,6 @@ class Tree:
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  self.branch_length = branch_length
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  self.parent: Tree | None = None
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  self.children: list[Tree] = []
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- self._features: dict[str, Any] = {}
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  def add_child(self, child: "Tree") -> "Tree":
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  child.parent = self
@@ -49,12 +47,6 @@ class Tree:
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  new_tree.add_child(child.copy())
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  return new_tree
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- def get(self, key: str, default: Any = None) -> Any:
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- return self._features.get(key, default)
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-
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- def set(self, key: str, value: Any) -> None:
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- self._features[key] = value
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-
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  def __iter__(self) -> Iterator["Tree"]:
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  return self.preorder_traversal()
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@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "phylogenie"
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- version = "2.0.6"
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+ version = "2.0.8"
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  description = "Generate phylogenetic datasets with minimal setup effort"
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  authors = ["Gabriele Marino <gabmarino.8601@gmail.com>"]
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  readme = "README.md"
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