pheval 0.6.5__tar.gz → 0.6.6__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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- {pheval-0.6.5 → pheval-0.6.6}/PKG-INFO +4 -2
- {pheval-0.6.5 → pheval-0.6.6}/pyproject.toml +1 -1
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/analyse/generate_rank_comparisons.py +1 -1
- {pheval-0.6.5 → pheval-0.6.6}/LICENSE +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/README.md +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/__init__.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/analyse/__init__.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/analyse/benchmark.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/analyse/benchmark_db_manager.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/analyse/benchmark_output_type.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/analyse/binary_classification_curves.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/analyse/binary_classification_stats.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/analyse/generate_plots.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/analyse/rank_stats.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/analyse/run_data_parser.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/cli.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/cli_pheval.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/cli_pheval_utils.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/config_parser.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/implementations/__init__.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/implementations/pheval_class_resolver.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/infra/__init__.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/infra/exomiserdb.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/post_processing/__init__.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/post_processing/mondo_mapping.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/post_processing/phenopacket_truth_set.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/post_processing/post_processing.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/post_processing/validate_result_format.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/prepare/__init__.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/prepare/create_noisy_phenopackets.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/prepare/create_spiked_vcf.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/prepare/custom_exceptions.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/prepare/prepare_corpus.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/prepare/update_phenopacket.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/resources/alternate_ouputs/CADA_results.txt +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/resources/alternate_ouputs/DeepPVP_results.txt +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/resources/alternate_ouputs/OVA_results.txt +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/resources/alternate_ouputs/Phen2Gene_results.json +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/resources/alternate_ouputs/Phenolyzer_results.txt +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/resources/alternate_ouputs/lirical_results.tsv +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/resources/alternate_ouputs/svanna_results.tsv +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/resources/hgnc_complete_set.txt +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/resources/metadata.json +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/resources/mondo.sssom.tsv +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/run_metadata.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/runners/__init__.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/runners/runner.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/utils/__init__.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/utils/docs_gen.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/utils/docs_gen.sh +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/utils/exomiser.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/utils/file_utils.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/utils/logger.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/utils/phenopacket_utils.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/utils/semsim_utils.py +0 -0
- {pheval-0.6.5 → pheval-0.6.6}/src/pheval/utils/utils.py +0 -0
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Metadata-Version: 2.
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Metadata-Version: 2.4
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Name: pheval
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Version: 0.6.
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Version: 0.6.6
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Summary:
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License-File: LICENSE
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Author: Yasemin Bridges
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Author-email: y.bridges@qmul.ac.uk
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Requires-Python: >=3.10,<4.0.0
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Classifier: Programming Language :: Python :: 3.11
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Classifier: Programming Language :: Python :: 3.12
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Classifier: Programming Language :: Python :: 3.13
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Classifier: Programming Language :: Python :: 3.14
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Requires-Dist: class-resolver (>=0.4.2)
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Requires-Dist: click (>=8.1.3)
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Requires-Dist: deprecation (>=2.1.0)
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from itertools import combinations
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import polars as pl
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from duckdb
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from duckdb import DuckDBPyConnection
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from pheval.analyse.benchmark_db_manager import write_table
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from pheval.analyse.benchmark_output_type import BenchmarkOutputType
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