pheval 0.5.3__tar.gz → 0.5.4__tar.gz

{pheval-0.5.3 → pheval-0.5.4}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pheval
-Version: 0.5.3
+Version: 0.5.4
 Summary: 
 Author: Yasemin Bridges
 Author-email: y.bridges@qmul.ac.uk

{pheval-0.5.3 → pheval-0.5.4}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pheval"
-version = "0.5.3"
+version = "0.5.4"
 description = ""
 authors = ["Yasemin Bridges <y.bridges@qmul.ac.uk>",
   "Julius Jacobsen <j.jacobsen@qmul.ac.uk>",

{pheval-0.5.3 → pheval-0.5.4}/src/pheval/post_processing/post_processing.py

@@ -151,6 +151,10 @@ def create_empty_pheval_result(
     """
     if result_type in executed_results:
         return
+    logger.info(
+        f"Writing classified results for {len(all_files(phenopacket_dir))} "
+        f"phenopackets to {output_dir}"
+    )
     executed_results.add(result_type)
     phenopacket_truth_set = PhenopacketTruthSet(phenopacket_dir)
     classify_method, write_method = _get_result_type(result_type, phenopacket_truth_set)
@@ -180,10 +184,6 @@ def generate_gene_result(
         phenopacket_dir (Path): Path to the Phenopacket directory
     """
     output_file = output_dir.joinpath(f"pheval_gene_results/{result_path.stem}-gene_result.parquet")
-    logger.info(
-        f"Writing classified results for {len(all_files(phenopacket_dir))} "
-        f"phenopackets to {output_dir.joinpath('pheval_gene_results')}"
-    )
     create_empty_pheval_result(
         phenopacket_dir, output_dir.joinpath("pheval_gene_results"), ResultType.GENE
     )
@@ -214,10 +214,6 @@ def generate_variant_result(
     output_file = output_dir.joinpath(
         f"pheval_variant_results/{result_path.stem}-variant_result.parquet"
     )
-    logger.info(
-        f"Writing classified results for {len(all_files(phenopacket_dir))} "
-        f"phenopackets to {output_dir.joinpath('pheval_variant_results')}"
-    )
     create_empty_pheval_result(
         phenopacket_dir, output_dir.joinpath("pheval_variant_results"), ResultType.VARIANT
     )
@@ -250,10 +246,6 @@ def generate_disease_result(
     output_file = output_dir.joinpath(
         f"pheval_disease_results/{result_path.stem}-disease_result.parquet"
     )
-    logger.info(
-        f"Writing classified results for {len(all_files(phenopacket_dir))} "
-        f"phenopackets to {output_dir.joinpath('pheval_disease_results')}"
-    )
     create_empty_pheval_result(
         phenopacket_dir, output_dir.joinpath("pheval_disease_results"), ResultType.DISEASE
     )