pheval 0.3.8__tar.gz → 0.3.9__tar.gz

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Files changed (56) hide show
  1. {pheval-0.3.8 → pheval-0.3.9}/PKG-INFO +1 -1
  2. {pheval-0.3.8 → pheval-0.3.9}/pyproject.toml +1 -1
  3. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/gene_prioritisation_analysis.py +1 -1
  4. {pheval-0.3.8 → pheval-0.3.9}/LICENSE +0 -0
  5. {pheval-0.3.8 → pheval-0.3.9}/README.md +0 -0
  6. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/__init__.py +0 -0
  7. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/__init__.py +0 -0
  8. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/analysis.py +0 -0
  9. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/benchmark_generator.py +0 -0
  10. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/benchmarking_data.py +0 -0
  11. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/binary_classification_stats.py +0 -0
  12. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/disease_prioritisation_analysis.py +0 -0
  13. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/generate_plots.py +0 -0
  14. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/generate_summary_outputs.py +0 -0
  15. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/parse_benchmark_summary.py +0 -0
  16. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/parse_pheval_result.py +0 -0
  17. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/prioritisation_rank_recorder.py +0 -0
  18. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/prioritisation_result_types.py +0 -0
  19. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/rank_stats.py +0 -0
  20. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/run_data_parser.py +0 -0
  21. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/variant_prioritisation_analysis.py +0 -0
  22. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/cli.py +0 -0
  23. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/cli_pheval.py +0 -0
  24. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/cli_pheval_utils.py +0 -0
  25. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/config_parser.py +0 -0
  26. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/constants.py +0 -0
  27. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/implementations/__init__.py +0 -0
  28. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/infra/__init__.py +0 -0
  29. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/infra/exomiserdb.py +0 -0
  30. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/post_processing/__init__.py +0 -0
  31. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/post_processing/post_processing.py +0 -0
  32. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/prepare/__init__.py +0 -0
  33. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/prepare/create_noisy_phenopackets.py +0 -0
  34. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/prepare/create_spiked_vcf.py +0 -0
  35. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/prepare/custom_exceptions.py +0 -0
  36. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/prepare/prepare_corpus.py +0 -0
  37. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/prepare/update_phenopacket.py +0 -0
  38. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/resources/alternate_ouputs/CADA_results.txt +0 -0
  39. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/resources/alternate_ouputs/DeepPVP_results.txt +0 -0
  40. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/resources/alternate_ouputs/OVA_results.txt +0 -0
  41. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/resources/alternate_ouputs/Phen2Gene_results.json +0 -0
  42. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/resources/alternate_ouputs/Phenolyzer_results.txt +0 -0
  43. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/resources/alternate_ouputs/lirical_results.tsv +0 -0
  44. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/resources/alternate_ouputs/svanna_results.tsv +0 -0
  45. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/resources/hgnc_complete_set.txt +0 -0
  46. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/run_metadata.py +0 -0
  47. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/runners/__init__.py +0 -0
  48. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/runners/runner.py +0 -0
  49. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/utils/__init__.py +0 -0
  50. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/utils/docs_gen.py +0 -0
  51. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/utils/docs_gen.sh +0 -0
  52. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/utils/exomiser.py +0 -0
  53. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/utils/file_utils.py +0 -0
  54. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/utils/phenopacket_utils.py +0 -0
  55. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/utils/semsim_utils.py +0 -0
  56. {pheval-0.3.8 → pheval-0.3.9}/src/pheval/utils/utils.py +0 -0
{pheval-0.3.8 → pheval-0.3.9}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: pheval
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- Version: 0.3.8
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+ Version: 0.3.9
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  Summary:
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  Author: Yasemin Bridges
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  Author-email: y.bridges@qmul.ac.uk
{pheval-0.3.8 → pheval-0.3.9}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "pheval"
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- version = "0.3.8"
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+ version = "0.3.9"
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  description = ""
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  authors = ["Yasemin Bridges <y.bridges@qmul.ac.uk>",
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  "Julius Jacobsen <j.jacobsen@qmul.ac.uk>",
{pheval-0.3.8 → pheval-0.3.9}/src/pheval/analyse/gene_prioritisation_analysis.py RENAMED
@@ -155,7 +155,7 @@ class AssessGenePrioritisation:
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  the original string.
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  """
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  list_pattern = re.compile(r"^\[\s*(?:[^\[\],\s]+(?:\s*,\s*[^\[\],\s]+)*)?\s*\]$")
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- if list_pattern.match(entity):
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+ if list_pattern.match(str(entity)):
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  return ast.literal_eval(entity)
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  else:
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  return entity
{pheval-0.3.8 → pheval-0.3.9}/LICENSE RENAMED
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{pheval-0.3.8 → pheval-0.3.9}/README.md RENAMED
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{pheval-0.3.8 → pheval-0.3.9}/src/pheval/__init__.py RENAMED
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{pheval-0.3.8 → pheval-0.3.9}/src/pheval/cli.py RENAMED
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{pheval-0.3.8 → pheval-0.3.9}/src/pheval/cli_pheval.py RENAMED
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{pheval-0.3.8 → pheval-0.3.9}/src/pheval/constants.py RENAMED
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{pheval-0.3.8 → pheval-0.3.9}/src/pheval/utils/utils.py RENAMED
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