pheval-exomiser 0.3.1__tar.gz → 0.3.3__tar.gz

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Files changed (16) hide show
  1. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/PKG-INFO +2 -2
  2. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/pyproject.toml +2 -2
  3. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/post_process/post_process_results_format.py +1 -1
  4. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/README.md +0 -0
  5. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/__init__.py +0 -0
  6. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/cli.py +0 -0
  7. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/constants.py +0 -0
  8. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/post_process/__init__.py +0 -0
  9. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/post_process/post_process.py +0 -0
  10. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/prepare/__init__.py +0 -0
  11. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/prepare/create_batch_commands.py +0 -0
  12. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/prepare/tool_specific_configuration_options.py +0 -0
  13. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/prepare/write_application_properties.py +0 -0
  14. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/run/__init__.py +0 -0
  15. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/run/run.py +0 -0
  16. {pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/runner.py +0 -0
{pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: pheval_exomiser
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- Version: 0.3.1
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+ Version: 0.3.3
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  Summary:
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  Author: Yasemin Bridges
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  Author-email: y.bridges@qmul.ac.uk
@@ -16,7 +16,7 @@ Requires-Dist: google (>=3.0.0,<4.0.0)
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  Requires-Dist: numpy (<2)
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  Requires-Dist: oaklib (>=0.5.12,<0.6.0)
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  Requires-Dist: phenopackets (>=2.0.2,<3.0.0)
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- Requires-Dist: pheval (>=0.5.1,<0.6.0)
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+ Requires-Dist: pheval (>=0.6.1,<0.7.0)
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  Requires-Dist: pyaml (>=21.10.1,<22.0.0)
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  Requires-Dist: pydantic (>=2.7.1,<3.0.0)
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  Description-Content-Type: text/markdown
{pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "pheval_exomiser"
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- version = "0.3.1"
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+ version = "0.3.3"
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  description = ""
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  authors = ["Yasemin Bridges <y.bridges@qmul.ac.uk>",
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  "Julius Jacobsen <j.jacobsen@qmul.ac.uk>",
@@ -19,7 +19,7 @@ oaklib = "^0.5.12"
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  docker = "^6.0.1"
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  pydantic = "^2.7.1"
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  numpy = "<2"
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- pheval = "^0.5.1"
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+ pheval = "^0.6.1"
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  [tool.poetry.dev-dependencies]
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  pytest = "^7.1.2"
{pheval_exomiser-0.3.1 → pheval_exomiser-0.3.3}/src/pheval_exomiser/post_process/post_process_results_format.py RENAMED
@@ -136,7 +136,7 @@ def create_standardised_results(
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  ):
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  sort_order = SortOrder.ASCENDING if sort_order.lower() == "ascending" else SortOrder.DESCENDING
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  for exomiser_json_result_path in files_with_suffix(result_dir, ".json"):
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- exomiser_json_result = pl.read_json(exomiser_json_result_path)
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+ exomiser_json_result = pl.read_json(exomiser_json_result_path, infer_schema_length=None)
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  if gene_analysis:
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  gene_results = extract_gene_results_from_json(exomiser_json_result, score_name)
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  generate_gene_result(