phenoml 0.0.5__tar.gz → 0.0.6__tar.gz

{phenoml-0.0.5 → phenoml-0.0.6}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: phenoml
-Version: 0.0.5
+Version: 0.0.6
 Summary: 
 Requires-Python: >=3.8,<4.0
 Classifier: Intended Audience :: Developers

{phenoml-0.0.5 → phenoml-0.0.6}/pyproject.toml

@@ -3,7 +3,7 @@ name = "phenoml"
 
 [tool.poetry]
 name = "phenoml"
-version = "0.0.5"
+version = "0.0.6"
 description = ""
 readme = "README.md"
 authors = []

{phenoml-0.0.5 → phenoml-0.0.6}/src/phenoml/agent/client.py

@@ -139,7 +139,10 @@ class AgentClient:
         client = phenoml(
             token="YOUR_TOKEN",
         )
-        client.agent.list()
+        client.agent.list(
+            is_active=True,
+            tags="tags",
+        )
         """
         _response = self._raw_client.list(is_active=is_active, tags=tags, request_options=request_options)
         return _response.data
@@ -429,6 +432,9 @@ class AgentClient:
         )
         client.agent.get_chat_messages(
             chat_session_id="chat_session_id",
+            num_messages=1,
+            role="role",
+            order="asc",
         )
         """
         _response = self._raw_client.get_chat_messages(
@@ -574,7 +580,10 @@ class AsyncAgentClient:
 
 
         async def main() -> None:
-            await client.agent.list()
+            await client.agent.list(
+                is_active=True,
+                tags="tags",
+            )
 
 
         asyncio.run(main())
@@ -912,6 +921,9 @@ class AsyncAgentClient:
         async def main() -> None:
             await client.agent.get_chat_messages(
                 chat_session_id="chat_session_id",
+                num_messages=1,
+                role="role",
+                order="asc",
             )
 
 

{phenoml-0.0.5 → phenoml-0.0.6}/src/phenoml/agent/types/json_patch_operation.py

@@ -20,7 +20,11 @@ class JsonPatchOperation(UniversalBaseModel):
     A JSON Pointer string specifying a location within the target document
     """
 
-    value: typing.Optional[typing.Optional[typing.Any]] = None
+    value: typing.Optional[typing.Optional[typing.Any]] = pydantic.Field(default=None)
+    """
+    The value to be used within the operations
+    """
+
     from_: typing_extensions.Annotated[typing.Optional[str], FieldMetadata(alias="from")] = pydantic.Field(default=None)
     """
     A JSON Pointer string specifying the location in the target document to move the value from (used with move and copy operations)

{phenoml-0.0.5 → phenoml-0.0.6}/src/phenoml/client.py

@@ -13,6 +13,7 @@ from .fhir.client import AsyncFhirClient, FhirClient
 from .fhir_provider.client import AsyncFhirProviderClient, FhirProviderClient
 from .lang2fhir.client import AsyncLang2FhirClient, Lang2FhirClient
 from .tools.client import AsyncToolsClient, ToolsClient
+from .workflows.client import AsyncWorkflowsClient, WorkflowsClient
 
 
 class phenoml:
@@ -33,7 +34,7 @@ class phenoml:
 
 
 
-    token : typing.Union[str, typing.Callable[[], str]]
+    token : typing.Optional[typing.Union[str, typing.Callable[[], str]]]
     headers : typing.Optional[typing.Dict[str, str]]
         Additional headers to send with every request.
 
@@ -60,7 +61,7 @@ class phenoml:
         *,
         base_url: typing.Optional[str] = None,
         environment: phenomlEnvironment = phenomlEnvironment.DEFAULT,
-        token: typing.Union[str, typing.Callable[[], str]],
+        token: typing.Optional[typing.Union[str, typing.Callable[[], str]]] = None,
         headers: typing.Optional[typing.Dict[str, str]] = None,
         timeout: typing.Optional[float] = None,
         follow_redirects: typing.Optional[bool] = True,
@@ -88,6 +89,7 @@ class phenoml:
         self.fhir_provider = FhirProviderClient(client_wrapper=self._client_wrapper)
         self.lang2fhir = Lang2FhirClient(client_wrapper=self._client_wrapper)
         self.tools = ToolsClient(client_wrapper=self._client_wrapper)
+        self.workflows = WorkflowsClient(client_wrapper=self._client_wrapper)
 
 
 class Asyncphenoml:
@@ -108,7 +110,7 @@ class Asyncphenoml:
 
 
 
-    token : typing.Union[str, typing.Callable[[], str]]
+    token : typing.Optional[typing.Union[str, typing.Callable[[], str]]]
     headers : typing.Optional[typing.Dict[str, str]]
         Additional headers to send with every request.
 
@@ -135,7 +137,7 @@ class Asyncphenoml:
         *,
         base_url: typing.Optional[str] = None,
         environment: phenomlEnvironment = phenomlEnvironment.DEFAULT,
-        token: typing.Union[str, typing.Callable[[], str]],
+        token: typing.Optional[typing.Union[str, typing.Callable[[], str]]] = None,
         headers: typing.Optional[typing.Dict[str, str]] = None,
         timeout: typing.Optional[float] = None,
         follow_redirects: typing.Optional[bool] = True,
@@ -163,6 +165,7 @@ class Asyncphenoml:
         self.fhir_provider = AsyncFhirProviderClient(client_wrapper=self._client_wrapper)
         self.lang2fhir = AsyncLang2FhirClient(client_wrapper=self._client_wrapper)
         self.tools = AsyncToolsClient(client_wrapper=self._client_wrapper)
+        self.workflows = AsyncWorkflowsClient(client_wrapper=self._client_wrapper)
 
 
 def _get_base_url(*, base_url: typing.Optional[str] = None, environment: phenomlEnvironment) -> str:

{phenoml-0.0.5 → phenoml-0.0.6}/src/phenoml/core/client_wrapper.py

@@ -10,7 +10,7 @@ class BaseClientWrapper:
     def __init__(
         self,
         *,
-        token: typing.Union[str, typing.Callable[[], str]],
+        token: typing.Optional[typing.Union[str, typing.Callable[[], str]]] = None,
         headers: typing.Optional[typing.Dict[str, str]] = None,
         base_url: str,
         timeout: typing.Optional[float] = None,
@@ -22,17 +22,19 @@ class BaseClientWrapper:
 
     def get_headers(self) -> typing.Dict[str, str]:
         headers: typing.Dict[str, str] = {
-            "User-Agent": "phenoml/0.0.5",
+            "User-Agent": "phenoml/0.0.6",
             "X-Fern-Language": "Python",
             "X-Fern-SDK-Name": "phenoml",
-            "X-Fern-SDK-Version": "0.0.5",
+            "X-Fern-SDK-Version": "0.0.6",
             **(self.get_custom_headers() or {}),
         }
-        headers["Authorization"] = f"Bearer {self._get_token()}"
+        token = self._get_token()
+        if token is not None:
+            headers["Authorization"] = f"Bearer {token}"
         return headers
 
-    def _get_token(self) -> str:
-        if isinstance(self._token, str):
+    def _get_token(self) -> typing.Optional[str]:
+        if isinstance(self._token, str) or self._token is None:
             return self._token
         else:
             return self._token()
@@ -51,7 +53,7 @@ class SyncClientWrapper(BaseClientWrapper):
     def __init__(
         self,
         *,
-        token: typing.Union[str, typing.Callable[[], str]],
+        token: typing.Optional[typing.Union[str, typing.Callable[[], str]]] = None,
         headers: typing.Optional[typing.Dict[str, str]] = None,
         base_url: str,
         timeout: typing.Optional[float] = None,
@@ -70,7 +72,7 @@ class AsyncClientWrapper(BaseClientWrapper):
     def __init__(
         self,
         *,
-        token: typing.Union[str, typing.Callable[[], str]],
+        token: typing.Optional[typing.Union[str, typing.Callable[[], str]]] = None,
         headers: typing.Optional[typing.Dict[str, str]] = None,
         base_url: str,
         timeout: typing.Optional[float] = None,

{phenoml-0.0.5 → phenoml-0.0.6}/src/phenoml/fhir/client.py

@@ -85,8 +85,8 @@ class FhirClient:
             token="YOUR_TOKEN",
         )
         client.fhir.search(
-            fhir_provider_id="fhir_provider_id",
-            fhir_path="fhir_path",
+            fhir_provider_id="550e8400-e29b-41d4-a716-446655440000",
+            fhir_path="Patient",
             phenoml_on_behalf_of="user@example.com",
         )
         """
@@ -157,8 +157,8 @@ class FhirClient:
             token="YOUR_TOKEN",
         )
         client.fhir.create(
-            fhir_provider_id="fhir_provider_id",
-            fhir_path="fhir_path",
+            fhir_provider_id="550e8400-e29b-41d4-a716-446655440000",
+            fhir_path="Patient",
             phenoml_on_behalf_of="user@example.com",
             resource_type="Patient",
         )
@@ -232,8 +232,8 @@ class FhirClient:
             token="YOUR_TOKEN",
         )
         client.fhir.upsert(
-            fhir_provider_id="fhir_provider_id",
-            fhir_path="fhir_path",
+            fhir_provider_id="550e8400-e29b-41d4-a716-446655440000",
+            fhir_path="Patient",
             phenoml_on_behalf_of="user@example.com",
             resource_type="Patient",
             id="123",
@@ -296,8 +296,8 @@ class FhirClient:
             token="YOUR_TOKEN",
         )
         client.fhir.delete(
-            fhir_provider_id="fhir_provider_id",
-            fhir_path="fhir_path",
+            fhir_provider_id="550e8400-e29b-41d4-a716-446655440000",
+            fhir_path="Patient",
             phenoml_on_behalf_of="user@example.com",
         )
         """
@@ -361,8 +361,8 @@ class FhirClient:
             token="YOUR_TOKEN",
         )
         client.fhir.patch(
-            fhir_provider_id="fhir_provider_id",
-            fhir_path="fhir_path",
+            fhir_provider_id="550e8400-e29b-41d4-a716-446655440000",
+            fhir_path="Patient",
             phenoml_on_behalf_of="user@example.com",
             request=[
                 FhirPatchRequestBodyItem(
@@ -432,7 +432,7 @@ class FhirClient:
             token="YOUR_TOKEN",
         )
         client.fhir.execute_bundle(
-            fhir_provider_id="fhir_provider_id",
+            fhir_provider_id="550e8400-e29b-41d4-a716-446655440000",
             phenoml_on_behalf_of="user@example.com",
             entry=[
                 FhirBundleEntryItem(
@@ -543,8 +543,8 @@ class AsyncFhirClient:
 
         async def main() -> None:
             await client.fhir.search(
-                fhir_provider_id="fhir_provider_id",
-                fhir_path="fhir_path",
+                fhir_provider_id="550e8400-e29b-41d4-a716-446655440000",
+                fhir_path="Patient",
                 phenoml_on_behalf_of="user@example.com",
             )
 
@@ -623,8 +623,8 @@ class AsyncFhirClient:
 
         async def main() -> None:
             await client.fhir.create(
-                fhir_provider_id="fhir_provider_id",
-                fhir_path="fhir_path",
+                fhir_provider_id="550e8400-e29b-41d4-a716-446655440000",
+                fhir_path="Patient",
                 phenoml_on_behalf_of="user@example.com",
                 resource_type="Patient",
             )
@@ -706,8 +706,8 @@ class AsyncFhirClient:
 
         async def main() -> None:
             await client.fhir.upsert(
-                fhir_provider_id="fhir_provider_id",
-                fhir_path="fhir_path",
+                fhir_provider_id="550e8400-e29b-41d4-a716-446655440000",
+                fhir_path="Patient",
                 phenoml_on_behalf_of="user@example.com",
                 resource_type="Patient",
                 id="123",
@@ -778,8 +778,8 @@ class AsyncFhirClient:
 
         async def main() -> None:
             await client.fhir.delete(
-                fhir_provider_id="fhir_provider_id",
-                fhir_path="fhir_path",
+                fhir_provider_id="550e8400-e29b-41d4-a716-446655440000",
+                fhir_path="Patient",
                 phenoml_on_behalf_of="user@example.com",
             )
 
@@ -851,8 +851,8 @@ class AsyncFhirClient:
 
         async def main() -> None:
             await client.fhir.patch(
-                fhir_provider_id="fhir_provider_id",
-                fhir_path="fhir_path",
+                fhir_provider_id="550e8400-e29b-41d4-a716-446655440000",
+                fhir_path="Patient",
                 phenoml_on_behalf_of="user@example.com",
                 request=[
                     FhirPatchRequestBodyItem(
@@ -930,7 +930,7 @@ class AsyncFhirClient:
 
         async def main() -> None:
             await client.fhir.execute_bundle(
-                fhir_provider_id="fhir_provider_id",
+                fhir_provider_id="550e8400-e29b-41d4-a716-446655440000",
                 phenoml_on_behalf_of="user@example.com",
                 entry=[
                     FhirBundleEntryItem(

{phenoml-0.0.5 → phenoml-0.0.6}/src/phenoml/fhir/types/fhir_patch_request_body_item.py

@@ -20,7 +20,11 @@ class FhirPatchRequestBodyItem(UniversalBaseModel):
     JSON Pointer to the target location
     """
 
-    value: typing.Optional[typing.Optional[typing.Any]] = None
+    value: typing.Optional[typing.Optional[typing.Any]] = pydantic.Field(default=None)
+    """
+    The value to use (required for add, replace, test operations)
+    """
+
     from_: typing_extensions.Annotated[typing.Optional[str], FieldMetadata(alias="from")] = pydantic.Field(default=None)
     """
     Source location for move and copy operations (JSON Pointer)

phenoml-0.0.6/src/phenoml/types/__init__.py

@@ -0,0 +1,21 @@
+# This file was auto-generated by Fern from our API Definition.
+
+# isort: skip_file
+
+from .cohort_response import CohortResponse
+from .lang2fhir_and_create_response import Lang2FhirAndCreateResponse
+from .lang2fhir_and_search_response import Lang2FhirAndSearchResponse
+from .mcp_server_response import McpServerResponse
+from .mcp_server_tool_call_response import McpServerToolCallResponse
+from .mcp_server_tool_response import McpServerToolResponse
+from .search_concept import SearchConcept
+
+__all__ = [
+    "CohortResponse",
+    "Lang2FhirAndCreateResponse",
+    "Lang2FhirAndSearchResponse",
+    "McpServerResponse",
+    "McpServerToolCallResponse",
+    "McpServerToolResponse",
+    "SearchConcept",
+]

phenoml-0.0.6/src/phenoml/types/cohort_response.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+CohortResponse = typing.Optional[typing.Any]

phenoml-0.0.6/src/phenoml/types/lang2fhir_and_create_response.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+Lang2FhirAndCreateResponse = typing.Optional[typing.Any]

phenoml-0.0.6/src/phenoml/types/lang2fhir_and_search_response.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+Lang2FhirAndSearchResponse = typing.Optional[typing.Any]

phenoml-0.0.6/src/phenoml/types/mcp_server_response.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+McpServerResponse = typing.Optional[typing.Any]

phenoml-0.0.6/src/phenoml/types/mcp_server_tool_call_response.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+McpServerToolCallResponse = typing.Optional[typing.Any]

phenoml-0.0.6/src/phenoml/types/mcp_server_tool_response.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+McpServerToolResponse = typing.Optional[typing.Any]

phenoml-0.0.6/src/phenoml/types/search_concept.py

@@ -0,0 +1,5 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+SearchConcept = typing.Optional[typing.Any]

phenoml-0.0.6/src/phenoml/workflows/__init__.py

@@ -0,0 +1,66 @@
+# This file was auto-generated by Fern from our API Definition.
+
+# isort: skip_file
+
+from .types import (
+    CreateWorkflowResponse,
+    DecisionNodeDefinition,
+    ExecuteWorkflowResponse,
+    ExecuteWorkflowResponseResults,
+    Lang2FhirCreateDefinition,
+    Lang2FhirSearchDefinition,
+    ListWorkflowsResponse,
+    StepOperation,
+    SubWorkflowDefinition,
+    WorkflowConfig,
+    WorkflowDefinition,
+    WorkflowGraph,
+    WorkflowResponse,
+    WorkflowResponseGraph,
+    WorkflowStep,
+    WorkflowStepSummary,
+    WorkflowStepSummaryType,
+    WorkflowStepType,
+)
+from .errors import BadRequestError, ForbiddenError, InternalServerError, NotFoundError, UnauthorizedError
+from . import mcp_server, workflows
+from .workflows import (
+    CreateWorkflowRequestFhirProviderId,
+    UpdateWorkflowRequestFhirProviderId,
+    WorkflowsDeleteResponse,
+    WorkflowsGetResponse,
+    WorkflowsUpdateResponse,
+)
+
+__all__ = [
+    "BadRequestError",
+    "CreateWorkflowRequestFhirProviderId",
+    "CreateWorkflowResponse",
+    "DecisionNodeDefinition",
+    "ExecuteWorkflowResponse",
+    "ExecuteWorkflowResponseResults",
+    "ForbiddenError",
+    "InternalServerError",
+    "Lang2FhirCreateDefinition",
+    "Lang2FhirSearchDefinition",
+    "ListWorkflowsResponse",
+    "NotFoundError",
+    "StepOperation",
+    "SubWorkflowDefinition",
+    "UnauthorizedError",
+    "UpdateWorkflowRequestFhirProviderId",
+    "WorkflowConfig",
+    "WorkflowDefinition",
+    "WorkflowGraph",
+    "WorkflowResponse",
+    "WorkflowResponseGraph",
+    "WorkflowStep",
+    "WorkflowStepSummary",
+    "WorkflowStepSummaryType",
+    "WorkflowStepType",
+    "WorkflowsDeleteResponse",
+    "WorkflowsGetResponse",
+    "WorkflowsUpdateResponse",
+    "mcp_server",
+    "workflows",
+]

phenoml-0.0.6/src/phenoml/workflows/client.py

@@ -0,0 +1,210 @@
+# This file was auto-generated by Fern from our API Definition.
+
+import typing
+
+from ..core.client_wrapper import AsyncClientWrapper, SyncClientWrapper
+from ..core.request_options import RequestOptions
+from .mcp_server.client import AsyncMcpServerClient, McpServerClient
+from .raw_client import AsyncRawWorkflowsClient, RawWorkflowsClient
+from .workflows.client import AsyncWorkflowsClient as workflows_workflows_client_AsyncWorkflowsClient
+from .workflows.client import WorkflowsClient as workflows_workflows_client_WorkflowsClient
+
+
+class WorkflowsClient:
+    def __init__(self, *, client_wrapper: SyncClientWrapper):
+        self._raw_client = RawWorkflowsClient(client_wrapper=client_wrapper)
+        self.workflows = workflows_workflows_client_WorkflowsClient(client_wrapper=client_wrapper)
+
+        self.mcp_server = McpServerClient(client_wrapper=client_wrapper)
+
+    @property
+    def with_raw_response(self) -> RawWorkflowsClient:
+        """
+        Retrieves a raw implementation of this client that returns raw responses.
+
+        Returns
+        -------
+        RawWorkflowsClient
+        """
+        return self._raw_client
+
+    def create_fhir_resource(self, *, request_options: typing.Optional[RequestOptions] = None) -> None:
+        """
+        Parameters
+        ----------
+        request_options : typing.Optional[RequestOptions]
+            Request-specific configuration.
+
+        Returns
+        -------
+        None
+
+        Examples
+        --------
+        from phenoml import phenoml
+
+        client = phenoml(
+            token="YOUR_TOKEN",
+        )
+        client.workflows.create_fhir_resource()
+        """
+        _response = self._raw_client.create_fhir_resource(request_options=request_options)
+        return _response.data
+
+    def search_fhir_resources(self, *, request_options: typing.Optional[RequestOptions] = None) -> None:
+        """
+        Parameters
+        ----------
+        request_options : typing.Optional[RequestOptions]
+            Request-specific configuration.
+
+        Returns
+        -------
+        None
+
+        Examples
+        --------
+        from phenoml import phenoml
+
+        client = phenoml(
+            token="YOUR_TOKEN",
+        )
+        client.workflows.search_fhir_resources()
+        """
+        _response = self._raw_client.search_fhir_resources(request_options=request_options)
+        return _response.data
+
+    def analyze_cohort(self, *, request_options: typing.Optional[RequestOptions] = None) -> None:
+        """
+        Parameters
+        ----------
+        request_options : typing.Optional[RequestOptions]
+            Request-specific configuration.
+
+        Returns
+        -------
+        None
+
+        Examples
+        --------
+        from phenoml import phenoml
+
+        client = phenoml(
+            token="YOUR_TOKEN",
+        )
+        client.workflows.analyze_cohort()
+        """
+        _response = self._raw_client.analyze_cohort(request_options=request_options)
+        return _response.data
+
+
+class AsyncWorkflowsClient:
+    def __init__(self, *, client_wrapper: AsyncClientWrapper):
+        self._raw_client = AsyncRawWorkflowsClient(client_wrapper=client_wrapper)
+        self.workflows = workflows_workflows_client_AsyncWorkflowsClient(client_wrapper=client_wrapper)
+
+        self.mcp_server = AsyncMcpServerClient(client_wrapper=client_wrapper)
+
+    @property
+    def with_raw_response(self) -> AsyncRawWorkflowsClient:
+        """
+        Retrieves a raw implementation of this client that returns raw responses.
+
+        Returns
+        -------
+        AsyncRawWorkflowsClient
+        """
+        return self._raw_client
+
+    async def create_fhir_resource(self, *, request_options: typing.Optional[RequestOptions] = None) -> None:
+        """
+        Parameters
+        ----------
+        request_options : typing.Optional[RequestOptions]
+            Request-specific configuration.
+
+        Returns
+        -------
+        None
+
+        Examples
+        --------
+        import asyncio
+
+        from phenoml import Asyncphenoml
+
+        client = Asyncphenoml(
+            token="YOUR_TOKEN",
+        )
+
+
+        async def main() -> None:
+            await client.workflows.create_fhir_resource()
+
+
+        asyncio.run(main())
+        """
+        _response = await self._raw_client.create_fhir_resource(request_options=request_options)
+        return _response.data
+
+    async def search_fhir_resources(self, *, request_options: typing.Optional[RequestOptions] = None) -> None:
+        """
+        Parameters
+        ----------
+        request_options : typing.Optional[RequestOptions]
+            Request-specific configuration.
+
+        Returns
+        -------
+        None
+
+        Examples
+        --------
+        import asyncio
+
+        from phenoml import Asyncphenoml
+
+        client = Asyncphenoml(
+            token="YOUR_TOKEN",
+        )
+
+
+        async def main() -> None:
+            await client.workflows.search_fhir_resources()
+
+
+        asyncio.run(main())
+        """
+        _response = await self._raw_client.search_fhir_resources(request_options=request_options)
+        return _response.data
+
+    async def analyze_cohort(self, *, request_options: typing.Optional[RequestOptions] = None) -> None:
+        """
+        Parameters
+        ----------
+        request_options : typing.Optional[RequestOptions]
+            Request-specific configuration.
+
+        Returns
+        -------
+        None
+
+        Examples
+        --------
+        import asyncio
+
+        from phenoml import Asyncphenoml
+
+        client = Asyncphenoml(
+            token="YOUR_TOKEN",
+        )
+
+
+        async def main() -> None:
+            await client.workflows.analyze_cohort()
+
+
+        asyncio.run(main())
+        """
+        _response = await self._raw_client.analyze_cohort(request_options=request_options)
+        return _response.data