phenoml 0.0.20__tar.gz → 2.0.0__tar.gz

{phenoml-0.0.20 → phenoml-2.0.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: phenoml
-Version: 0.0.20
+Version: 2.0.0
 Summary: 
 Requires-Python: >=3.8,<4.0
 Classifier: Intended Audience :: Developers

{phenoml-0.0.20 → phenoml-2.0.0}/pyproject.toml

@@ -3,7 +3,7 @@ name = "phenoml"
 
 [tool.poetry]
 name = "phenoml"
-version = "0.0.20"
+version = "2.0.0"
 description = ""
 readme = "README.md"
 authors = []

{phenoml-0.0.20 → phenoml-2.0.0}/src/phenoml/agent/client.py

@@ -41,10 +41,10 @@ class AgentClient:
         *,
         name: str,
         prompts: typing.Sequence[str],
+        provider: AgentCreateRequestProvider,
         description: typing.Optional[str] = OMIT,
         tools: typing.Optional[typing.Sequence[str]] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
-        provider: typing.Optional[AgentCreateRequestProvider] = OMIT,
         request_options: typing.Optional[RequestOptions] = None,
     ) -> AgentResponse:
         """
@@ -58,6 +58,10 @@ class AgentClient:
         prompts : typing.Sequence[str]
             Array of prompt IDs to use for this agent
 
+        provider : AgentCreateRequestProvider
+            FHIR provider ID(s) for this agent. Required.
+            In shared/experiment environments, the default sandbox provider is used if a different provider is not explicitly specified.
+
         description : typing.Optional[str]
             Agent description
 
@@ -67,9 +71,6 @@ class AgentClient:
         tags : typing.Optional[typing.Sequence[str]]
             Tags for categorizing the agent
 
-        provider : typing.Optional[AgentCreateRequestProvider]
-            FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
-
         request_options : typing.Optional[RequestOptions]
             Request-specific configuration.
 
@@ -88,15 +89,16 @@ class AgentClient:
         client.agent.create(
             name="name",
             prompts=["prompt_123", "prompt_456"],
+            provider="provider",
         )
         """
         _response = self._raw_client.create(
             name=name,
             prompts=prompts,
+            provider=provider,
             description=description,
             tools=tools,
             tags=tags,
-            provider=provider,
             request_options=request_options,
         )
         return _response.data
@@ -171,10 +173,10 @@ class AgentClient:
         *,
         name: str,
         prompts: typing.Sequence[str],
+        provider: AgentCreateRequestProvider,
         description: typing.Optional[str] = OMIT,
         tools: typing.Optional[typing.Sequence[str]] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
-        provider: typing.Optional[AgentCreateRequestProvider] = OMIT,
         request_options: typing.Optional[RequestOptions] = None,
     ) -> AgentResponse:
         """
@@ -191,6 +193,10 @@ class AgentClient:
         prompts : typing.Sequence[str]
             Array of prompt IDs to use for this agent
 
+        provider : AgentCreateRequestProvider
+            FHIR provider ID(s) for this agent. Required.
+            In shared/experiment environments, the default sandbox provider is used if a different provider is not explicitly specified.
+
         description : typing.Optional[str]
             Agent description
 
@@ -200,9 +206,6 @@ class AgentClient:
         tags : typing.Optional[typing.Sequence[str]]
             Tags for categorizing the agent
 
-        provider : typing.Optional[AgentCreateRequestProvider]
-            FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
-
         request_options : typing.Optional[RequestOptions]
             Request-specific configuration.
 
@@ -222,16 +225,17 @@ class AgentClient:
             id="id",
             name="name",
             prompts=["prompt_123", "prompt_456"],
+            provider="provider",
         )
         """
         _response = self._raw_client.update(
             id,
             name=name,
             prompts=prompts,
+            provider=provider,
             description=description,
             tools=tools,
             tags=tags,
-            provider=provider,
             request_options=request_options,
         )
         return _response.data
@@ -474,10 +478,10 @@ class AsyncAgentClient:
         *,
         name: str,
         prompts: typing.Sequence[str],
+        provider: AgentCreateRequestProvider,
         description: typing.Optional[str] = OMIT,
         tools: typing.Optional[typing.Sequence[str]] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
-        provider: typing.Optional[AgentCreateRequestProvider] = OMIT,
         request_options: typing.Optional[RequestOptions] = None,
     ) -> AgentResponse:
         """
@@ -491,6 +495,10 @@ class AsyncAgentClient:
         prompts : typing.Sequence[str]
             Array of prompt IDs to use for this agent
 
+        provider : AgentCreateRequestProvider
+            FHIR provider ID(s) for this agent. Required.
+            In shared/experiment environments, the default sandbox provider is used if a different provider is not explicitly specified.
+
         description : typing.Optional[str]
             Agent description
 
@@ -500,9 +508,6 @@ class AsyncAgentClient:
         tags : typing.Optional[typing.Sequence[str]]
             Tags for categorizing the agent
 
-        provider : typing.Optional[AgentCreateRequestProvider]
-            FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
-
         request_options : typing.Optional[RequestOptions]
             Request-specific configuration.
 
@@ -526,6 +531,7 @@ class AsyncAgentClient:
             await client.agent.create(
                 name="name",
                 prompts=["prompt_123", "prompt_456"],
+                provider="provider",
             )
 
 
@@ -534,10 +540,10 @@ class AsyncAgentClient:
         _response = await self._raw_client.create(
             name=name,
             prompts=prompts,
+            provider=provider,
             description=description,
             tools=tools,
             tags=tags,
-            provider=provider,
             request_options=request_options,
         )
         return _response.data
@@ -628,10 +634,10 @@ class AsyncAgentClient:
         *,
         name: str,
         prompts: typing.Sequence[str],
+        provider: AgentCreateRequestProvider,
         description: typing.Optional[str] = OMIT,
         tools: typing.Optional[typing.Sequence[str]] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
-        provider: typing.Optional[AgentCreateRequestProvider] = OMIT,
         request_options: typing.Optional[RequestOptions] = None,
     ) -> AgentResponse:
         """
@@ -648,6 +654,10 @@ class AsyncAgentClient:
         prompts : typing.Sequence[str]
             Array of prompt IDs to use for this agent
 
+        provider : AgentCreateRequestProvider
+            FHIR provider ID(s) for this agent. Required.
+            In shared/experiment environments, the default sandbox provider is used if a different provider is not explicitly specified.
+
         description : typing.Optional[str]
             Agent description
 
@@ -657,9 +667,6 @@ class AsyncAgentClient:
         tags : typing.Optional[typing.Sequence[str]]
             Tags for categorizing the agent
 
-        provider : typing.Optional[AgentCreateRequestProvider]
-            FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
-
         request_options : typing.Optional[RequestOptions]
             Request-specific configuration.
 
@@ -684,6 +691,7 @@ class AsyncAgentClient:
                 id="id",
                 name="name",
                 prompts=["prompt_123", "prompt_456"],
+                provider="provider",
             )
 
 
@@ -693,10 +701,10 @@ class AsyncAgentClient:
             id,
             name=name,
             prompts=prompts,
+            provider=provider,
             description=description,
             tools=tools,
             tags=tags,
-            provider=provider,
             request_options=request_options,
         )
         return _response.data

{phenoml-0.0.20 → phenoml-2.0.0}/src/phenoml/agent/prompts/client.py

@@ -35,7 +35,6 @@ class PromptsClient:
         *,
         name: str,
         content: str,
-        is_active: bool,
         description: typing.Optional[str] = OMIT,
         is_default: typing.Optional[bool] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
@@ -52,9 +51,6 @@ class PromptsClient:
         content : str
             Prompt content
 
-        is_active : bool
-            Whether the prompt is active
-
         description : typing.Optional[str]
             Prompt description
 
@@ -82,13 +78,11 @@ class PromptsClient:
         client.agent.prompts.create(
             name="Medical Assistant System Prompt",
             content="You are a helpful medical assistant specialized in FHIR data processing...",
-            is_active=True,
         )
         """
         _response = self._raw_client.create(
             name=name,
             content=content,
-            is_active=is_active,
             description=description,
             is_default=is_default,
             tags=tags,
@@ -161,7 +155,6 @@ class PromptsClient:
         description: typing.Optional[str] = OMIT,
         content: typing.Optional[str] = OMIT,
         is_default: typing.Optional[bool] = OMIT,
-        is_active: typing.Optional[bool] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
         request_options: typing.Optional[RequestOptions] = None,
     ) -> AgentPromptsResponse:
@@ -185,9 +178,6 @@ class PromptsClient:
         is_default : typing.Optional[bool]
             Whether this is a default prompt
 
-        is_active : typing.Optional[bool]
-            Whether the prompt is active
-
         tags : typing.Optional[typing.Sequence[str]]
             Tags for categorizing the prompt
 
@@ -216,7 +206,6 @@ class PromptsClient:
             description=description,
             content=content,
             is_default=is_default,
-            is_active=is_active,
             tags=tags,
             request_options=request_options,
         )
@@ -224,7 +213,7 @@ class PromptsClient:
 
     def delete(self, id: str, *, request_options: typing.Optional[RequestOptions] = None) -> PromptsDeleteResponse:
         """
-        Soft deletes a prompt by setting is_active to false
+        Deletes a prompt
 
         Parameters
         ----------
@@ -352,7 +341,6 @@ class AsyncPromptsClient:
         *,
         name: str,
         content: str,
-        is_active: bool,
         description: typing.Optional[str] = OMIT,
         is_default: typing.Optional[bool] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
@@ -369,9 +357,6 @@ class AsyncPromptsClient:
         content : str
             Prompt content
 
-        is_active : bool
-            Whether the prompt is active
-
         description : typing.Optional[str]
             Prompt description
 
@@ -404,7 +389,6 @@ class AsyncPromptsClient:
             await client.agent.prompts.create(
                 name="Medical Assistant System Prompt",
                 content="You are a helpful medical assistant specialized in FHIR data processing...",
-                is_active=True,
             )
 
 
@@ -413,7 +397,6 @@ class AsyncPromptsClient:
         _response = await self._raw_client.create(
             name=name,
             content=content,
-            is_active=is_active,
             description=description,
             is_default=is_default,
             tags=tags,
@@ -502,7 +485,6 @@ class AsyncPromptsClient:
         description: typing.Optional[str] = OMIT,
         content: typing.Optional[str] = OMIT,
         is_default: typing.Optional[bool] = OMIT,
-        is_active: typing.Optional[bool] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
         request_options: typing.Optional[RequestOptions] = None,
     ) -> AgentPromptsResponse:
@@ -526,9 +508,6 @@ class AsyncPromptsClient:
         is_default : typing.Optional[bool]
             Whether this is a default prompt
 
-        is_active : typing.Optional[bool]
-            Whether the prompt is active
-
         tags : typing.Optional[typing.Sequence[str]]
             Tags for categorizing the prompt
 
@@ -565,7 +544,6 @@ class AsyncPromptsClient:
             description=description,
             content=content,
             is_default=is_default,
-            is_active=is_active,
             tags=tags,
             request_options=request_options,
         )
@@ -575,7 +553,7 @@ class AsyncPromptsClient:
         self, id: str, *, request_options: typing.Optional[RequestOptions] = None
     ) -> PromptsDeleteResponse:
         """
-        Soft deletes a prompt by setting is_active to false
+        Deletes a prompt
 
         Parameters
         ----------

{phenoml-0.0.20 → phenoml-2.0.0}/src/phenoml/agent/prompts/raw_client.py

@@ -34,7 +34,6 @@ class RawPromptsClient:
         *,
         name: str,
         content: str,
-        is_active: bool,
         description: typing.Optional[str] = OMIT,
         is_default: typing.Optional[bool] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
@@ -51,9 +50,6 @@ class RawPromptsClient:
         content : str
             Prompt content
 
-        is_active : bool
-            Whether the prompt is active
-
         description : typing.Optional[str]
             Prompt description
 
@@ -79,7 +75,6 @@ class RawPromptsClient:
                 "description": description,
                 "content": content,
                 "is_default": is_default,
-                "is_active": is_active,
                 "tags": tags,
             },
             headers={
@@ -305,7 +300,6 @@ class RawPromptsClient:
         description: typing.Optional[str] = OMIT,
         content: typing.Optional[str] = OMIT,
         is_default: typing.Optional[bool] = OMIT,
-        is_active: typing.Optional[bool] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
         request_options: typing.Optional[RequestOptions] = None,
     ) -> HttpResponse[AgentPromptsResponse]:
@@ -329,9 +323,6 @@ class RawPromptsClient:
         is_default : typing.Optional[bool]
             Whether this is a default prompt
 
-        is_active : typing.Optional[bool]
-            Whether the prompt is active
-
         tags : typing.Optional[typing.Sequence[str]]
             Tags for categorizing the prompt
 
@@ -351,7 +342,6 @@ class RawPromptsClient:
                 "description": description,
                 "content": content,
                 "is_default": is_default,
-                "is_active": is_active,
                 "tags": tags,
             },
             headers={
@@ -434,7 +424,7 @@ class RawPromptsClient:
         self, id: str, *, request_options: typing.Optional[RequestOptions] = None
     ) -> HttpResponse[PromptsDeleteResponse]:
         """
-        Soft deletes a prompt by setting is_active to false
+        Deletes a prompt
 
         Parameters
         ----------
@@ -693,7 +683,6 @@ class AsyncRawPromptsClient:
         *,
         name: str,
         content: str,
-        is_active: bool,
         description: typing.Optional[str] = OMIT,
         is_default: typing.Optional[bool] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
@@ -710,9 +699,6 @@ class AsyncRawPromptsClient:
         content : str
             Prompt content
 
-        is_active : bool
-            Whether the prompt is active
-
         description : typing.Optional[str]
             Prompt description
 
@@ -738,7 +724,6 @@ class AsyncRawPromptsClient:
                 "description": description,
                 "content": content,
                 "is_default": is_default,
-                "is_active": is_active,
                 "tags": tags,
             },
             headers={
@@ -966,7 +951,6 @@ class AsyncRawPromptsClient:
         description: typing.Optional[str] = OMIT,
         content: typing.Optional[str] = OMIT,
         is_default: typing.Optional[bool] = OMIT,
-        is_active: typing.Optional[bool] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
         request_options: typing.Optional[RequestOptions] = None,
     ) -> AsyncHttpResponse[AgentPromptsResponse]:
@@ -990,9 +974,6 @@ class AsyncRawPromptsClient:
         is_default : typing.Optional[bool]
             Whether this is a default prompt
 
-        is_active : typing.Optional[bool]
-            Whether the prompt is active
-
         tags : typing.Optional[typing.Sequence[str]]
             Tags for categorizing the prompt
 
@@ -1012,7 +993,6 @@ class AsyncRawPromptsClient:
                 "description": description,
                 "content": content,
                 "is_default": is_default,
-                "is_active": is_active,
                 "tags": tags,
             },
             headers={
@@ -1095,7 +1075,7 @@ class AsyncRawPromptsClient:
         self, id: str, *, request_options: typing.Optional[RequestOptions] = None
     ) -> AsyncHttpResponse[PromptsDeleteResponse]:
         """
-        Soft deletes a prompt by setting is_active to false
+        Deletes a prompt
 
         Parameters
         ----------

{phenoml-0.0.20 → phenoml-2.0.0}/src/phenoml/agent/raw_client.py

@@ -38,10 +38,10 @@ class RawAgentClient:
         *,
         name: str,
         prompts: typing.Sequence[str],
+        provider: AgentCreateRequestProvider,
         description: typing.Optional[str] = OMIT,
         tools: typing.Optional[typing.Sequence[str]] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
-        provider: typing.Optional[AgentCreateRequestProvider] = OMIT,
         request_options: typing.Optional[RequestOptions] = None,
     ) -> HttpResponse[AgentResponse]:
         """
@@ -55,6 +55,10 @@ class RawAgentClient:
         prompts : typing.Sequence[str]
             Array of prompt IDs to use for this agent
 
+        provider : AgentCreateRequestProvider
+            FHIR provider ID(s) for this agent. Required.
+            In shared/experiment environments, the default sandbox provider is used if a different provider is not explicitly specified.
+
         description : typing.Optional[str]
             Agent description
 
@@ -64,9 +68,6 @@ class RawAgentClient:
         tags : typing.Optional[typing.Sequence[str]]
             Tags for categorizing the agent
 
-        provider : typing.Optional[AgentCreateRequestProvider]
-            FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
-
         request_options : typing.Optional[RequestOptions]
             Request-specific configuration.
 
@@ -315,10 +316,10 @@ class RawAgentClient:
         *,
         name: str,
         prompts: typing.Sequence[str],
+        provider: AgentCreateRequestProvider,
         description: typing.Optional[str] = OMIT,
         tools: typing.Optional[typing.Sequence[str]] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
-        provider: typing.Optional[AgentCreateRequestProvider] = OMIT,
         request_options: typing.Optional[RequestOptions] = None,
     ) -> HttpResponse[AgentResponse]:
         """
@@ -335,6 +336,10 @@ class RawAgentClient:
         prompts : typing.Sequence[str]
             Array of prompt IDs to use for this agent
 
+        provider : AgentCreateRequestProvider
+            FHIR provider ID(s) for this agent. Required.
+            In shared/experiment environments, the default sandbox provider is used if a different provider is not explicitly specified.
+
         description : typing.Optional[str]
             Agent description
 
@@ -344,9 +349,6 @@ class RawAgentClient:
         tags : typing.Optional[typing.Sequence[str]]
             Tags for categorizing the agent
 
-        provider : typing.Optional[AgentCreateRequestProvider]
-            FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
-
         request_options : typing.Optional[RequestOptions]
             Request-specific configuration.
 
@@ -858,10 +860,10 @@ class AsyncRawAgentClient:
         *,
         name: str,
         prompts: typing.Sequence[str],
+        provider: AgentCreateRequestProvider,
         description: typing.Optional[str] = OMIT,
         tools: typing.Optional[typing.Sequence[str]] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
-        provider: typing.Optional[AgentCreateRequestProvider] = OMIT,
         request_options: typing.Optional[RequestOptions] = None,
     ) -> AsyncHttpResponse[AgentResponse]:
         """
@@ -875,6 +877,10 @@ class AsyncRawAgentClient:
         prompts : typing.Sequence[str]
             Array of prompt IDs to use for this agent
 
+        provider : AgentCreateRequestProvider
+            FHIR provider ID(s) for this agent. Required.
+            In shared/experiment environments, the default sandbox provider is used if a different provider is not explicitly specified.
+
         description : typing.Optional[str]
             Agent description
 
@@ -884,9 +890,6 @@ class AsyncRawAgentClient:
         tags : typing.Optional[typing.Sequence[str]]
             Tags for categorizing the agent
 
-        provider : typing.Optional[AgentCreateRequestProvider]
-            FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
-
         request_options : typing.Optional[RequestOptions]
             Request-specific configuration.
 
@@ -1137,10 +1140,10 @@ class AsyncRawAgentClient:
         *,
         name: str,
         prompts: typing.Sequence[str],
+        provider: AgentCreateRequestProvider,
         description: typing.Optional[str] = OMIT,
         tools: typing.Optional[typing.Sequence[str]] = OMIT,
         tags: typing.Optional[typing.Sequence[str]] = OMIT,
-        provider: typing.Optional[AgentCreateRequestProvider] = OMIT,
         request_options: typing.Optional[RequestOptions] = None,
     ) -> AsyncHttpResponse[AgentResponse]:
         """
@@ -1157,6 +1160,10 @@ class AsyncRawAgentClient:
         prompts : typing.Sequence[str]
             Array of prompt IDs to use for this agent
 
+        provider : AgentCreateRequestProvider
+            FHIR provider ID(s) for this agent. Required.
+            In shared/experiment environments, the default sandbox provider is used if a different provider is not explicitly specified.
+
         description : typing.Optional[str]
             Agent description
 
@@ -1166,9 +1173,6 @@ class AsyncRawAgentClient:
         tags : typing.Optional[typing.Sequence[str]]
             Tags for categorizing the agent
 
-        provider : typing.Optional[AgentCreateRequestProvider]
-            FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
-
         request_options : typing.Optional[RequestOptions]
             Request-specific configuration.
 

{phenoml-0.0.20 → phenoml-2.0.0}/src/phenoml/agent/types/agent_create_request.py

@@ -33,9 +33,10 @@ class AgentCreateRequest(UniversalBaseModel):
     Tags for categorizing the agent
     """
 
-    provider: typing.Optional[AgentCreateRequestProvider] = pydantic.Field(default=None)
+    provider: AgentCreateRequestProvider = pydantic.Field()
     """
-    FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
+    FHIR provider ID(s) for this agent. Required.
+    In shared/experiment environments, the default sandbox provider is used if a different provider is not explicitly specified.
     """
 
     if IS_PYDANTIC_V2:

{phenoml-0.0.20 → phenoml-2.0.0}/src/phenoml/agent/types/agent_template.py

@@ -33,11 +33,6 @@ class AgentTemplate(UniversalBaseModel):
     Array of MCP server tool IDs used by this agent
     """
 
-    is_active: typing.Optional[bool] = pydantic.Field(default=None)
-    """
-    Whether the agent is active
-    """
-
     tags: typing.Optional[typing.List[str]] = pydantic.Field(default=None)
     """
     Tags for categorizing the agent

{phenoml-0.0.20 → phenoml-2.0.0}/src/phenoml/agent/types/prompt_template.py

@@ -32,11 +32,6 @@ class PromptTemplate(UniversalBaseModel):
     Whether this is a default prompt
     """
 
-    is_active: typing.Optional[bool] = pydantic.Field(default=None)
-    """
-    Whether the prompt is active
-    """
-
     tags: typing.Optional[typing.List[str]] = pydantic.Field(default=None)
     """
     Tags for categorizing the prompt