phenoml 0.0.1__tar.gz → 0.0.5__tar.gz

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  1. {phenoml-0.0.1 → phenoml-0.0.5}/PKG-INFO +1 -1
  2. {phenoml-0.0.1 → phenoml-0.0.5}/pyproject.toml +2 -2
  3. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/__init__.py +10 -12
  4. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/client.py +172 -65
  5. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/prompts/raw_client.py +134 -134
  6. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/raw_client.py +236 -69
  7. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/types/__init__.py +10 -12
  8. phenoml-0.0.5/src/phenoml/agent/types/agent_create_request.py +53 -0
  9. phenoml-0.0.5/src/phenoml/agent/types/agent_create_request_provider.py +5 -0
  10. phenoml-0.0.5/src/phenoml/agent/types/agent_get_chat_messages_request_order.py +5 -0
  11. phenoml-0.0.5/src/phenoml/agent/types/agent_get_chat_messages_response.py +22 -0
  12. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/types/agent_template.py +6 -4
  13. phenoml-0.0.5/src/phenoml/agent/types/agent_template_provider.py +5 -0
  14. phenoml-0.0.5/src/phenoml/agent/types/chat_message_template.py +72 -0
  15. phenoml-0.0.5/src/phenoml/agent/types/chat_session_template.py +67 -0
  16. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/client.py +6 -0
  17. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/client_wrapper.py +2 -2
  18. phenoml-0.0.5/src/phenoml/fhir/__init__.py +36 -0
  19. phenoml-0.0.5/src/phenoml/fhir/client.py +970 -0
  20. phenoml-0.0.5/src/phenoml/fhir/errors/__init__.py +10 -0
  21. phenoml-0.0.5/src/phenoml/fhir/errors/not_found_error.py +10 -0
  22. phenoml-0.0.5/src/phenoml/fhir/raw_client.py +1385 -0
  23. phenoml-0.0.5/src/phenoml/fhir/types/__init__.py +29 -0
  24. phenoml-0.0.1/src/phenoml/agent/types/chat_fhir_client_config.py → phenoml-0.0.5/src/phenoml/fhir/types/error_response.py +11 -6
  25. phenoml-0.0.5/src/phenoml/fhir/types/fhir_bundle.py +43 -0
  26. phenoml-0.0.5/src/phenoml/fhir/types/fhir_bundle_entry_item.py +34 -0
  27. phenoml-0.0.5/src/phenoml/fhir/types/fhir_bundle_entry_item_request.py +25 -0
  28. phenoml-0.0.5/src/phenoml/fhir/types/fhir_bundle_entry_item_request_method.py +5 -0
  29. phenoml-0.0.5/src/phenoml/fhir/types/fhir_bundle_entry_item_response.py +24 -0
  30. phenoml-0.0.5/src/phenoml/fhir/types/fhir_patch_request_body_item.py +36 -0
  31. phenoml-0.0.5/src/phenoml/fhir/types/fhir_patch_request_body_item_op.py +7 -0
  32. phenoml-0.0.5/src/phenoml/fhir/types/fhir_resource.py +40 -0
  33. phenoml-0.0.1/src/phenoml/agent/types/agent_fhir_config.py → phenoml-0.0.5/src/phenoml/fhir/types/fhir_resource_meta.py +8 -11
  34. phenoml-0.0.5/src/phenoml/fhir/types/fhir_search_response.py +8 -0
  35. phenoml-0.0.5/src/phenoml/fhir_provider/__init__.py +43 -0
  36. phenoml-0.0.5/src/phenoml/fhir_provider/client.py +731 -0
  37. phenoml-0.0.5/src/phenoml/fhir_provider/errors/__init__.py +11 -0
  38. phenoml-0.0.5/src/phenoml/fhir_provider/errors/not_found_error.py +10 -0
  39. phenoml-0.0.5/src/phenoml/fhir_provider/raw_client.py +1445 -0
  40. phenoml-0.0.5/src/phenoml/fhir_provider/types/__init__.py +35 -0
  41. phenoml-0.0.5/src/phenoml/fhir_provider/types/auth_method.py +7 -0
  42. phenoml-0.0.5/src/phenoml/fhir_provider/types/fhir_provider_auth_config.py +53 -0
  43. phenoml-0.0.5/src/phenoml/fhir_provider/types/fhir_provider_delete_response.py +20 -0
  44. phenoml-0.0.5/src/phenoml/fhir_provider/types/fhir_provider_list_response.py +22 -0
  45. phenoml-0.0.5/src/phenoml/fhir_provider/types/fhir_provider_remove_auth_config_response.py +22 -0
  46. phenoml-0.0.5/src/phenoml/fhir_provider/types/fhir_provider_response.py +22 -0
  47. phenoml-0.0.5/src/phenoml/fhir_provider/types/fhir_provider_set_active_auth_config_response.py +22 -0
  48. phenoml-0.0.5/src/phenoml/fhir_provider/types/fhir_provider_template.py +66 -0
  49. phenoml-0.0.5/src/phenoml/fhir_provider/types/fhir_query_response.py +27 -0
  50. phenoml-0.0.5/src/phenoml/fhir_provider/types/fhir_query_response_data.py +5 -0
  51. phenoml-0.0.5/src/phenoml/fhir_provider/types/json_web_key.py +51 -0
  52. phenoml-0.0.5/src/phenoml/fhir_provider/types/provider.py +8 -0
  53. phenoml-0.0.5/src/phenoml/fhir_provider/types/service_account_key.py +35 -0
  54. phenoml-0.0.5/src/phenoml/fhir_provider/types/smart_configuration.py +46 -0
  55. phenoml-0.0.5/src/phenoml/lang2fhir/errors/bad_request_error.py +10 -0
  56. phenoml-0.0.5/src/phenoml/lang2fhir/errors/internal_server_error.py +10 -0
  57. phenoml-0.0.5/src/phenoml/lang2fhir/errors/unauthorized_error.py +10 -0
  58. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/tools/__init__.py +12 -8
  59. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/tools/client.py +27 -60
  60. phenoml-0.0.5/src/phenoml/tools/errors/bad_request_error.py +10 -0
  61. phenoml-0.0.5/src/phenoml/tools/errors/forbidden_error.py +10 -0
  62. phenoml-0.0.5/src/phenoml/tools/errors/internal_server_error.py +10 -0
  63. phenoml-0.0.5/src/phenoml/tools/errors/unauthorized_error.py +10 -0
  64. phenoml-0.0.5/src/phenoml/tools/mcp_server/__init__.py +7 -0
  65. phenoml-0.0.5/src/phenoml/tools/mcp_server/client.py +336 -0
  66. phenoml-0.0.5/src/phenoml/tools/mcp_server/raw_client.py +641 -0
  67. phenoml-0.0.5/src/phenoml/tools/mcp_server/tools/__init__.py +4 -0
  68. phenoml-0.0.5/src/phenoml/tools/mcp_server/tools/client.py +358 -0
  69. phenoml-0.0.5/src/phenoml/tools/mcp_server/tools/raw_client.py +656 -0
  70. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/tools/raw_client.py +18 -67
  71. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/tools/types/__init__.py +10 -8
  72. phenoml-0.0.5/src/phenoml/tools/types/mcp_server_response.py +33 -0
  73. phenoml-0.0.5/src/phenoml/tools/types/mcp_server_response_data.py +51 -0
  74. phenoml-0.0.5/src/phenoml/tools/types/mcp_server_tool_call_response.py +37 -0
  75. phenoml-0.0.5/src/phenoml/tools/types/mcp_server_tool_response.py +33 -0
  76. phenoml-0.0.5/src/phenoml/tools/types/mcp_server_tool_response_data.py +61 -0
  77. phenoml-0.0.1/src/phenoml/agent/types/agent_create_request_provider.py +0 -13
  78. phenoml-0.0.1/src/phenoml/agent/types/agent_create_request_provider_item.py +0 -7
  79. phenoml-0.0.1/src/phenoml/agent/types/agent_template_provider.py +0 -13
  80. phenoml-0.0.1/src/phenoml/agent/types/agent_template_provider_item.py +0 -5
  81. phenoml-0.0.1/src/phenoml/agent/types/agent_update_request_provider.py +0 -13
  82. phenoml-0.0.1/src/phenoml/agent/types/agent_update_request_provider_item.py +0 -7
  83. phenoml-0.0.1/src/phenoml/tools/types/cohort_request_provider.py +0 -5
  84. phenoml-0.0.1/src/phenoml/tools/types/fhir_client_config.py +0 -31
  85. phenoml-0.0.1/src/phenoml/tools/types/lang2fhir_and_create_request_provider.py +0 -7
  86. phenoml-0.0.1/src/phenoml/tools/types/lang2fhir_and_search_request_provider.py +0 -7
  87. {phenoml-0.0.1 → phenoml-0.0.5}/LICENSE +0 -0
  88. {phenoml-0.0.1 → phenoml-0.0.5}/README.md +0 -0
  89. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/__init__.py +0 -0
  90. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/errors/__init__.py +0 -0
  91. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/errors/bad_request_error.py +0 -0
  92. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/errors/forbidden_error.py +0 -0
  93. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/errors/internal_server_error.py +0 -0
  94. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/errors/not_found_error.py +0 -0
  95. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/errors/unauthorized_error.py +0 -0
  96. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/prompts/__init__.py +0 -0
  97. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/prompts/client.py +60 -60
  98. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/prompts/types/__init__.py +0 -0
  99. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/prompts/types/prompts_delete_response.py +0 -0
  100. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/prompts/types/prompts_list_response.py +0 -0
  101. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/types/agent_chat_response.py +0 -0
  102. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/types/agent_delete_response.py +0 -0
  103. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/types/agent_list_response.py +0 -0
  104. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/types/agent_prompts_response.py +0 -0
  105. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/types/agent_response.py +0 -0
  106. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/types/json_patch.py +0 -0
  107. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/types/json_patch_operation.py +0 -0
  108. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/types/json_patch_operation_op.py +0 -0
  109. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/types/prompt_template.py +0 -0
  110. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/agent/types/success_response.py +0 -0
  111. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/__init__.py +0 -0
  112. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/auth/__init__.py +0 -0
  113. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/auth/client.py +0 -0
  114. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/auth/raw_client.py +0 -0
  115. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/auth/types/__init__.py +0 -0
  116. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/auth/types/auth_generate_token_response.py +0 -0
  117. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/client.py +0 -0
  118. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/errors/__init__.py +0 -0
  119. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/errors/bad_request_error.py +0 -0
  120. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/errors/unauthorized_error.py +0 -0
  121. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/raw_client.py +0 -0
  122. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/types/__init__.py +0 -0
  123. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/types/bad_request_error_body.py +0 -0
  124. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/authtoken/types/unauthorized_error_body.py +0 -0
  125. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/cohort/__init__.py +0 -0
  126. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/cohort/client.py +0 -0
  127. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/cohort/errors/__init__.py +0 -0
  128. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/cohort/errors/bad_request_error.py +0 -0
  129. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/cohort/errors/internal_server_error.py +0 -0
  130. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/cohort/errors/unauthorized_error.py +0 -0
  131. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/cohort/raw_client.py +0 -0
  132. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/cohort/types/__init__.py +0 -0
  133. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/cohort/types/cohort_response.py +0 -0
  134. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/cohort/types/search_concept.py +0 -0
  135. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/__init__.py +0 -0
  136. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/client.py +0 -0
  137. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/errors/__init__.py +0 -0
  138. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/errors/bad_request_error.py +0 -0
  139. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/errors/conflict_error.py +0 -0
  140. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/errors/failed_dependency_error.py +0 -0
  141. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/errors/internal_server_error.py +0 -0
  142. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/errors/unauthorized_error.py +0 -0
  143. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/raw_client.py +0 -0
  144. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/__init__.py +0 -0
  145. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/bad_request_error_body.py +0 -0
  146. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/construe_cohort_request_config.py +0 -0
  147. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/construe_cohort_response.py +0 -0
  148. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/construe_cohort_response_queries_item.py +0 -0
  149. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/construe_cohort_response_queries_item_code_extract_results_item.py +0 -0
  150. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/construe_cohort_response_queries_item_code_extract_results_item_codes_item.py +0 -0
  151. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/construe_upload_code_system_response.py +0 -0
  152. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/extract_codes_result.py +0 -0
  153. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/extract_request_config.py +0 -0
  154. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/extract_request_config_chunking_method.py +0 -0
  155. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/extract_request_system.py +0 -0
  156. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/extracted_code_result.py +0 -0
  157. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/internal_server_error_body.py +0 -0
  158. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/unauthorized_error_body.py +0 -0
  159. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/construe/types/upload_request_format.py +0 -0
  160. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/__init__.py +0 -0
  161. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/api_error.py +0 -0
  162. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/datetime_utils.py +0 -0
  163. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/file.py +0 -0
  164. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/force_multipart.py +0 -0
  165. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/http_client.py +0 -0
  166. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/http_response.py +0 -0
  167. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/jsonable_encoder.py +0 -0
  168. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/pydantic_utilities.py +0 -0
  169. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/query_encoder.py +0 -0
  170. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/remove_none_from_dict.py +0 -0
  171. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/request_options.py +0 -0
  172. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/core/serialization.py +0 -0
  173. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/environment.py +0 -0
  174. {phenoml-0.0.1/src/phenoml/lang2fhir → phenoml-0.0.5/src/phenoml/fhir}/errors/bad_request_error.py +0 -0
  175. {phenoml-0.0.1/src/phenoml/lang2fhir → phenoml-0.0.5/src/phenoml/fhir}/errors/internal_server_error.py +0 -0
  176. {phenoml-0.0.1/src/phenoml/lang2fhir → phenoml-0.0.5/src/phenoml/fhir}/errors/unauthorized_error.py +0 -0
  177. {phenoml-0.0.1/src/phenoml/tools → phenoml-0.0.5/src/phenoml/fhir_provider}/errors/bad_request_error.py +0 -0
  178. {phenoml-0.0.1/src/phenoml/lang2fhir → phenoml-0.0.5/src/phenoml/fhir_provider}/errors/forbidden_error.py +0 -0
  179. {phenoml-0.0.1/src/phenoml/tools → phenoml-0.0.5/src/phenoml/fhir_provider}/errors/internal_server_error.py +0 -0
  180. {phenoml-0.0.1/src/phenoml/tools → phenoml-0.0.5/src/phenoml/fhir_provider}/errors/unauthorized_error.py +0 -0
  181. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/lang2fhir/__init__.py +0 -0
  182. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/lang2fhir/client.py +0 -0
  183. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/lang2fhir/errors/__init__.py +0 -0
  184. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/lang2fhir/errors/failed_dependency_error.py +0 -0
  185. {phenoml-0.0.1/src/phenoml/tools → phenoml-0.0.5/src/phenoml/lang2fhir}/errors/forbidden_error.py +0 -0
  186. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/lang2fhir/raw_client.py +0 -0
  187. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/lang2fhir/types/__init__.py +0 -0
  188. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/lang2fhir/types/create_request_resource.py +0 -0
  189. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/lang2fhir/types/document_request_file_type.py +0 -0
  190. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/lang2fhir/types/document_request_resource.py +0 -0
  191. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/lang2fhir/types/fhir_resource.py +0 -0
  192. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/lang2fhir/types/lang2fhir_upload_profile_response.py +0 -0
  193. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/lang2fhir/types/search_response.py +0 -0
  194. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/py.typed +0 -0
  195. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/tools/errors/__init__.py +0 -0
  196. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/tools/errors/failed_dependency_error.py +0 -0
  197. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/tools/types/cohort_response.py +0 -0
  198. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/tools/types/lang2fhir_and_create_request_resource.py +0 -0
  199. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/tools/types/lang2fhir_and_create_response.py +0 -0
  200. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/tools/types/lang2fhir_and_search_response.py +0 -0
  201. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/tools/types/search_concept.py +0 -0
  202. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/version.py +0 -0
  203. {phenoml-0.0.1 → phenoml-0.0.5}/src/phenoml/wrapper_client.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: phenoml
3
- Version: 0.0.1
3
+ Version: 0.0.5
4
4
  Summary:
5
5
  Requires-Python: >=3.8,<4.0
6
6
  Classifier: Intended Audience :: Developers
@@ -3,7 +3,7 @@ name = "phenoml"
3
3
 
4
4
  [tool.poetry]
5
5
  name = "phenoml"
6
- version = "0.0.1"
6
+ version = "0.0.5"
7
7
  description = ""
8
8
  readme = "README.md"
9
9
  authors = []
@@ -31,7 +31,7 @@ packages = [
31
31
  ]
32
32
 
33
33
  [project.urls]
34
- Repository = 'https://github.com/fern-demo/phenoml-python-sdk'
34
+ Repository = 'https://github.com/phenoml/phenoml-python-sdk'
35
35
 
36
36
  [tool.poetry.dependencies]
37
37
  python = "^3.8"
@@ -4,19 +4,18 @@
4
4
 
5
5
  from .types import (
6
6
  AgentChatResponse,
7
+ AgentCreateRequest,
7
8
  AgentCreateRequestProvider,
8
- AgentCreateRequestProviderItem,
9
9
  AgentDeleteResponse,
10
- AgentFhirConfig,
10
+ AgentGetChatMessagesRequestOrder,
11
+ AgentGetChatMessagesResponse,
11
12
  AgentListResponse,
12
13
  AgentPromptsResponse,
13
14
  AgentResponse,
14
15
  AgentTemplate,
15
16
  AgentTemplateProvider,
16
- AgentTemplateProviderItem,
17
- AgentUpdateRequestProvider,
18
- AgentUpdateRequestProviderItem,
19
- ChatFhirClientConfig,
17
+ ChatMessageTemplate,
18
+ ChatSessionTemplate,
20
19
  JsonPatch,
21
20
  JsonPatchOperation,
22
21
  JsonPatchOperationOp,
@@ -29,20 +28,19 @@ from .prompts import PromptsDeleteResponse, PromptsListResponse
29
28
 
30
29
  __all__ = [
31
30
  "AgentChatResponse",
31
+ "AgentCreateRequest",
32
32
  "AgentCreateRequestProvider",
33
- "AgentCreateRequestProviderItem",
34
33
  "AgentDeleteResponse",
35
- "AgentFhirConfig",
34
+ "AgentGetChatMessagesRequestOrder",
35
+ "AgentGetChatMessagesResponse",
36
36
  "AgentListResponse",
37
37
  "AgentPromptsResponse",
38
38
  "AgentResponse",
39
39
  "AgentTemplate",
40
40
  "AgentTemplateProvider",
41
- "AgentTemplateProviderItem",
42
- "AgentUpdateRequestProvider",
43
- "AgentUpdateRequestProviderItem",
44
41
  "BadRequestError",
45
- "ChatFhirClientConfig",
42
+ "ChatMessageTemplate",
43
+ "ChatSessionTemplate",
46
44
  "ForbiddenError",
47
45
  "InternalServerError",
48
46
  "JsonPatch",
@@ -9,11 +9,10 @@ from .raw_client import AsyncRawAgentClient, RawAgentClient
9
9
  from .types.agent_chat_response import AgentChatResponse
10
10
  from .types.agent_create_request_provider import AgentCreateRequestProvider
11
11
  from .types.agent_delete_response import AgentDeleteResponse
12
- from .types.agent_fhir_config import AgentFhirConfig
12
+ from .types.agent_get_chat_messages_request_order import AgentGetChatMessagesRequestOrder
13
+ from .types.agent_get_chat_messages_response import AgentGetChatMessagesResponse
13
14
  from .types.agent_list_response import AgentListResponse
14
15
  from .types.agent_response import AgentResponse
15
- from .types.agent_update_request_provider import AgentUpdateRequestProvider
16
- from .types.chat_fhir_client_config import ChatFhirClientConfig
17
16
  from .types.json_patch import JsonPatch
18
17
 
19
18
  # this is used as the default value for optional parameters
@@ -43,9 +42,9 @@ class AgentClient:
43
42
  prompts: typing.Sequence[str],
44
43
  is_active: bool,
45
44
  description: typing.Optional[str] = OMIT,
45
+ tools: typing.Optional[typing.Sequence[str]] = OMIT,
46
46
  tags: typing.Optional[typing.Sequence[str]] = OMIT,
47
47
  provider: typing.Optional[AgentCreateRequestProvider] = OMIT,
48
- meta: typing.Optional[AgentFhirConfig] = OMIT,
49
48
  request_options: typing.Optional[RequestOptions] = None,
50
49
  ) -> AgentResponse:
51
50
  """
@@ -65,13 +64,14 @@ class AgentClient:
65
64
  description : typing.Optional[str]
66
65
  Agent description
67
66
 
67
+ tools : typing.Optional[typing.Sequence[str]]
68
+ Array of MCP server tool IDs to use for this agent
69
+
68
70
  tags : typing.Optional[typing.Sequence[str]]
69
71
  Tags for categorizing the agent
70
72
 
71
73
  provider : typing.Optional[AgentCreateRequestProvider]
72
- FHIR provider type - can be a single provider or array of providers
73
-
74
- meta : typing.Optional[AgentFhirConfig]
74
+ FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
75
75
 
76
76
  request_options : typing.Optional[RequestOptions]
77
77
  Request-specific configuration.
@@ -99,9 +99,9 @@ class AgentClient:
99
99
  prompts=prompts,
100
100
  is_active=is_active,
101
101
  description=description,
102
+ tools=tools,
102
103
  tags=tags,
103
104
  provider=provider,
104
- meta=meta,
105
105
  request_options=request_options,
106
106
  )
107
107
  return _response.data
@@ -179,13 +179,13 @@ class AgentClient:
179
179
  self,
180
180
  id: str,
181
181
  *,
182
- name: typing.Optional[str] = OMIT,
182
+ name: str,
183
+ prompts: typing.Sequence[str],
184
+ is_active: bool,
183
185
  description: typing.Optional[str] = OMIT,
184
- prompts: typing.Optional[typing.Sequence[str]] = OMIT,
185
- is_active: typing.Optional[bool] = OMIT,
186
+ tools: typing.Optional[typing.Sequence[str]] = OMIT,
186
187
  tags: typing.Optional[typing.Sequence[str]] = OMIT,
187
- provider: typing.Optional[AgentUpdateRequestProvider] = OMIT,
188
- meta: typing.Optional[AgentFhirConfig] = OMIT,
188
+ provider: typing.Optional[AgentCreateRequestProvider] = OMIT,
189
189
  request_options: typing.Optional[RequestOptions] = None,
190
190
  ) -> AgentResponse:
191
191
  """
@@ -196,25 +196,26 @@ class AgentClient:
196
196
  id : str
197
197
  Agent ID
198
198
 
199
- name : typing.Optional[str]
199
+ name : str
200
200
  Agent name
201
201
 
202
- description : typing.Optional[str]
203
- Agent description
204
-
205
- prompts : typing.Optional[typing.Sequence[str]]
202
+ prompts : typing.Sequence[str]
206
203
  Array of prompt IDs to use for this agent
207
204
 
208
- is_active : typing.Optional[bool]
205
+ is_active : bool
209
206
  Whether the agent is active
210
207
 
208
+ description : typing.Optional[str]
209
+ Agent description
210
+
211
+ tools : typing.Optional[typing.Sequence[str]]
212
+ Array of MCP server tool IDs to use for this agent
213
+
211
214
  tags : typing.Optional[typing.Sequence[str]]
212
215
  Tags for categorizing the agent
213
216
 
214
- provider : typing.Optional[AgentUpdateRequestProvider]
215
- FHIR provider type - can be a single provider or array of providers
216
-
217
- meta : typing.Optional[AgentFhirConfig]
217
+ provider : typing.Optional[AgentCreateRequestProvider]
218
+ FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
218
219
 
219
220
  request_options : typing.Optional[RequestOptions]
220
221
  Request-specific configuration.
@@ -233,17 +234,20 @@ class AgentClient:
233
234
  )
234
235
  client.agent.update(
235
236
  id="id",
237
+ name="name",
238
+ prompts=["prompt_123", "prompt_456"],
239
+ is_active=True,
236
240
  )
237
241
  """
238
242
  _response = self._raw_client.update(
239
243
  id,
240
244
  name=name,
241
- description=description,
242
245
  prompts=prompts,
243
246
  is_active=is_active,
247
+ description=description,
248
+ tools=tools,
244
249
  tags=tags,
245
250
  provider=provider,
246
- meta=meta,
247
251
  request_options=request_options,
248
252
  )
249
253
  return _response.data
@@ -338,7 +342,6 @@ class AgentClient:
338
342
  agent_id: str,
339
343
  context: typing.Optional[str] = OMIT,
340
344
  session_id: typing.Optional[str] = OMIT,
341
- meta: typing.Optional[ChatFhirClientConfig] = OMIT,
342
345
  request_options: typing.Optional[RequestOptions] = None,
343
346
  ) -> AgentChatResponse:
344
347
  """
@@ -358,9 +361,6 @@ class AgentClient:
358
361
  session_id : typing.Optional[str]
359
362
  Optional session ID for conversation continuity
360
363
 
361
- meta : typing.Optional[ChatFhirClientConfig]
362
- Optional user-specific FHIR configuration overrides
363
-
364
364
  request_options : typing.Optional[RequestOptions]
365
365
  Request-specific configuration.
366
366
 
@@ -382,11 +382,60 @@ class AgentClient:
382
382
  )
383
383
  """
384
384
  _response = self._raw_client.chat(
385
- message=message,
386
- agent_id=agent_id,
387
- context=context,
388
- session_id=session_id,
389
- meta=meta,
385
+ message=message, agent_id=agent_id, context=context, session_id=session_id, request_options=request_options
386
+ )
387
+ return _response.data
388
+
389
+ def get_chat_messages(
390
+ self,
391
+ *,
392
+ chat_session_id: str,
393
+ num_messages: typing.Optional[int] = None,
394
+ role: typing.Optional[str] = None,
395
+ order: typing.Optional[AgentGetChatMessagesRequestOrder] = None,
396
+ request_options: typing.Optional[RequestOptions] = None,
397
+ ) -> AgentGetChatMessagesResponse:
398
+ """
399
+ Retrieves a list of chat messages for a given chat session
400
+
401
+ Parameters
402
+ ----------
403
+ chat_session_id : str
404
+ Chat session ID
405
+
406
+ num_messages : typing.Optional[int]
407
+ Number of messages to return
408
+
409
+ role : typing.Optional[str]
410
+ Filter by role
411
+
412
+ order : typing.Optional[AgentGetChatMessagesRequestOrder]
413
+ Order of messages
414
+
415
+ request_options : typing.Optional[RequestOptions]
416
+ Request-specific configuration.
417
+
418
+ Returns
419
+ -------
420
+ AgentGetChatMessagesResponse
421
+ Chat messages retrieved successfully
422
+
423
+ Examples
424
+ --------
425
+ from phenoml import phenoml
426
+
427
+ client = phenoml(
428
+ token="YOUR_TOKEN",
429
+ )
430
+ client.agent.get_chat_messages(
431
+ chat_session_id="chat_session_id",
432
+ )
433
+ """
434
+ _response = self._raw_client.get_chat_messages(
435
+ chat_session_id=chat_session_id,
436
+ num_messages=num_messages,
437
+ role=role,
438
+ order=order,
390
439
  request_options=request_options,
391
440
  )
392
441
  return _response.data
@@ -415,9 +464,9 @@ class AsyncAgentClient:
415
464
  prompts: typing.Sequence[str],
416
465
  is_active: bool,
417
466
  description: typing.Optional[str] = OMIT,
467
+ tools: typing.Optional[typing.Sequence[str]] = OMIT,
418
468
  tags: typing.Optional[typing.Sequence[str]] = OMIT,
419
469
  provider: typing.Optional[AgentCreateRequestProvider] = OMIT,
420
- meta: typing.Optional[AgentFhirConfig] = OMIT,
421
470
  request_options: typing.Optional[RequestOptions] = None,
422
471
  ) -> AgentResponse:
423
472
  """
@@ -437,13 +486,14 @@ class AsyncAgentClient:
437
486
  description : typing.Optional[str]
438
487
  Agent description
439
488
 
489
+ tools : typing.Optional[typing.Sequence[str]]
490
+ Array of MCP server tool IDs to use for this agent
491
+
440
492
  tags : typing.Optional[typing.Sequence[str]]
441
493
  Tags for categorizing the agent
442
494
 
443
495
  provider : typing.Optional[AgentCreateRequestProvider]
444
- FHIR provider type - can be a single provider or array of providers
445
-
446
- meta : typing.Optional[AgentFhirConfig]
496
+ FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
447
497
 
448
498
  request_options : typing.Optional[RequestOptions]
449
499
  Request-specific configuration.
@@ -479,9 +529,9 @@ class AsyncAgentClient:
479
529
  prompts=prompts,
480
530
  is_active=is_active,
481
531
  description=description,
532
+ tools=tools,
482
533
  tags=tags,
483
534
  provider=provider,
484
- meta=meta,
485
535
  request_options=request_options,
486
536
  )
487
537
  return _response.data
@@ -575,13 +625,13 @@ class AsyncAgentClient:
575
625
  self,
576
626
  id: str,
577
627
  *,
578
- name: typing.Optional[str] = OMIT,
628
+ name: str,
629
+ prompts: typing.Sequence[str],
630
+ is_active: bool,
579
631
  description: typing.Optional[str] = OMIT,
580
- prompts: typing.Optional[typing.Sequence[str]] = OMIT,
581
- is_active: typing.Optional[bool] = OMIT,
632
+ tools: typing.Optional[typing.Sequence[str]] = OMIT,
582
633
  tags: typing.Optional[typing.Sequence[str]] = OMIT,
583
- provider: typing.Optional[AgentUpdateRequestProvider] = OMIT,
584
- meta: typing.Optional[AgentFhirConfig] = OMIT,
634
+ provider: typing.Optional[AgentCreateRequestProvider] = OMIT,
585
635
  request_options: typing.Optional[RequestOptions] = None,
586
636
  ) -> AgentResponse:
587
637
  """
@@ -592,25 +642,26 @@ class AsyncAgentClient:
592
642
  id : str
593
643
  Agent ID
594
644
 
595
- name : typing.Optional[str]
645
+ name : str
596
646
  Agent name
597
647
 
598
- description : typing.Optional[str]
599
- Agent description
600
-
601
- prompts : typing.Optional[typing.Sequence[str]]
648
+ prompts : typing.Sequence[str]
602
649
  Array of prompt IDs to use for this agent
603
650
 
604
- is_active : typing.Optional[bool]
651
+ is_active : bool
605
652
  Whether the agent is active
606
653
 
654
+ description : typing.Optional[str]
655
+ Agent description
656
+
657
+ tools : typing.Optional[typing.Sequence[str]]
658
+ Array of MCP server tool IDs to use for this agent
659
+
607
660
  tags : typing.Optional[typing.Sequence[str]]
608
661
  Tags for categorizing the agent
609
662
 
610
- provider : typing.Optional[AgentUpdateRequestProvider]
611
- FHIR provider type - can be a single provider or array of providers
612
-
613
- meta : typing.Optional[AgentFhirConfig]
663
+ provider : typing.Optional[AgentCreateRequestProvider]
664
+ FHIR provider ID(s) - must be valid UUIDs from existing FHIR providers
614
665
 
615
666
  request_options : typing.Optional[RequestOptions]
616
667
  Request-specific configuration.
@@ -634,6 +685,9 @@ class AsyncAgentClient:
634
685
  async def main() -> None:
635
686
  await client.agent.update(
636
687
  id="id",
688
+ name="name",
689
+ prompts=["prompt_123", "prompt_456"],
690
+ is_active=True,
637
691
  )
638
692
 
639
693
 
@@ -642,12 +696,12 @@ class AsyncAgentClient:
642
696
  _response = await self._raw_client.update(
643
697
  id,
644
698
  name=name,
645
- description=description,
646
699
  prompts=prompts,
647
700
  is_active=is_active,
701
+ description=description,
702
+ tools=tools,
648
703
  tags=tags,
649
704
  provider=provider,
650
- meta=meta,
651
705
  request_options=request_options,
652
706
  )
653
707
  return _response.data
@@ -758,7 +812,6 @@ class AsyncAgentClient:
758
812
  agent_id: str,
759
813
  context: typing.Optional[str] = OMIT,
760
814
  session_id: typing.Optional[str] = OMIT,
761
- meta: typing.Optional[ChatFhirClientConfig] = OMIT,
762
815
  request_options: typing.Optional[RequestOptions] = None,
763
816
  ) -> AgentChatResponse:
764
817
  """
@@ -778,9 +831,6 @@ class AsyncAgentClient:
778
831
  session_id : typing.Optional[str]
779
832
  Optional session ID for conversation continuity
780
833
 
781
- meta : typing.Optional[ChatFhirClientConfig]
782
- Optional user-specific FHIR configuration overrides
783
-
784
834
  request_options : typing.Optional[RequestOptions]
785
835
  Request-specific configuration.
786
836
 
@@ -810,11 +860,68 @@ class AsyncAgentClient:
810
860
  asyncio.run(main())
811
861
  """
812
862
  _response = await self._raw_client.chat(
813
- message=message,
814
- agent_id=agent_id,
815
- context=context,
816
- session_id=session_id,
817
- meta=meta,
863
+ message=message, agent_id=agent_id, context=context, session_id=session_id, request_options=request_options
864
+ )
865
+ return _response.data
866
+
867
+ async def get_chat_messages(
868
+ self,
869
+ *,
870
+ chat_session_id: str,
871
+ num_messages: typing.Optional[int] = None,
872
+ role: typing.Optional[str] = None,
873
+ order: typing.Optional[AgentGetChatMessagesRequestOrder] = None,
874
+ request_options: typing.Optional[RequestOptions] = None,
875
+ ) -> AgentGetChatMessagesResponse:
876
+ """
877
+ Retrieves a list of chat messages for a given chat session
878
+
879
+ Parameters
880
+ ----------
881
+ chat_session_id : str
882
+ Chat session ID
883
+
884
+ num_messages : typing.Optional[int]
885
+ Number of messages to return
886
+
887
+ role : typing.Optional[str]
888
+ Filter by role
889
+
890
+ order : typing.Optional[AgentGetChatMessagesRequestOrder]
891
+ Order of messages
892
+
893
+ request_options : typing.Optional[RequestOptions]
894
+ Request-specific configuration.
895
+
896
+ Returns
897
+ -------
898
+ AgentGetChatMessagesResponse
899
+ Chat messages retrieved successfully
900
+
901
+ Examples
902
+ --------
903
+ import asyncio
904
+
905
+ from phenoml import Asyncphenoml
906
+
907
+ client = Asyncphenoml(
908
+ token="YOUR_TOKEN",
909
+ )
910
+
911
+
912
+ async def main() -> None:
913
+ await client.agent.get_chat_messages(
914
+ chat_session_id="chat_session_id",
915
+ )
916
+
917
+
918
+ asyncio.run(main())
919
+ """
920
+ _response = await self._raw_client.get_chat_messages(
921
+ chat_session_id=chat_session_id,
922
+ num_messages=num_messages,
923
+ role=role,
924
+ order=order,
818
925
  request_options=request_options,
819
926
  )
820
927
  return _response.data