phenoml 0.0.1__tar.gz

phenoml-0.0.1/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2025 PhenoML
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

phenoml-0.0.1/PKG-INFO

@@ -0,0 +1,192 @@
+Metadata-Version: 2.1
+Name: phenoml
+Version: 0.0.1
+Summary: 
+Requires-Python: >=3.8,<4.0
+Classifier: Intended Audience :: Developers
+Classifier: Operating System :: MacOS
+Classifier: Operating System :: Microsoft :: Windows
+Classifier: Operating System :: OS Independent
+Classifier: Operating System :: POSIX
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Classifier: Typing :: Typed
+Requires-Dist: httpx (>=0.21.2)
+Requires-Dist: pydantic (>=1.9.2)
+Requires-Dist: pydantic-core (>=2.18.2)
+Requires-Dist: typing_extensions (>=4.0.0)
+Description-Content-Type: text/markdown
+
+# Phenoml Python Library
+
+[![fern shield](https://img.shields.io/badge/%F0%9F%8C%BF-Built%20with%20Fern-brightgreen)](https://buildwithfern.com?utm_source=github&utm_medium=github&utm_campaign=readme&utm_source=https%3A%2F%2Fgithub.com%2Ffern-demo%2Fphenoml-python-sdk)
+[![pypi](https://img.shields.io/pypi/v/phenoml)](https://pypi.python.org/pypi/phenoml)
+
+The Phenoml Python library provides convenient access to the Phenoml API from Python.
+
+## Installation
+
+```sh
+pip install phenoml
+```
+
+## Reference
+
+A full reference for this library is available [here](https://github.com/phenoml/phenoml-python-sdk/blob/HEAD/./reference.md).
+
+## Usage
+
+Instantiate and use the client with the following:
+
+```python
+from phenoml import Client
+
+client = Client(
+    username="your_username",
+    password="your_password",
+    base_url="https://your-phenoml-instance.com"
+)
+
+client.agent.create(
+    name="name",
+    prompts=["prompt_123", "prompt_456"],
+    is_active=True,
+)
+```
+
+## Async Client
+
+The SDK also exports an `async` client so that you can make non-blocking calls to our API.
+
+```python
+import asyncio
+
+from phenoml import AsyncClient
+
+client = AsyncClient(
+    username="your_username",
+    password="your_password",
+    base_url="https://your-phenoml-instance.com"
+)
+
+
+async def main() -> None:
+    await client.initialize()  # Generate token from username/password
+    await client.agent.create(
+        name="name",
+        prompts=["prompt_123", "prompt_456"],
+        is_active=True,
+    )
+
+
+asyncio.run(main())
+```
+
+## Exception Handling
+
+When the API returns a non-success status code (4xx or 5xx response), a subclass of the following error
+will be thrown.
+
+```python
+from phenoml.core.api_error import ApiError
+
+try:
+    client.agent.create(...)
+except ApiError as e:
+    print(e.status_code)
+    print(e.body)
+```
+
+## Advanced
+
+### Access Raw Response Data
+
+The SDK provides access to raw response data, including headers, through the `.with_raw_response` property.
+The `.with_raw_response` property returns a "raw" client that can be used to access the `.headers` and `.data` attributes.
+
+```python
+from phenoml import phenoml
+
+client = phenoml(
+    ...,
+)
+response = client.agent.with_raw_response.create(...)
+print(response.headers)  # access the response headers
+print(response.data)  # access the underlying object
+```
+
+### Retries
+
+The SDK is instrumented with automatic retries with exponential backoff. A request will be retried as long
+as the request is deemed retryable and the number of retry attempts has not grown larger than the configured
+retry limit (default: 2).
+
+A request is deemed retryable when any of the following HTTP status codes is returned:
+
+- [408](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/408) (Timeout)
+- [429](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/429) (Too Many Requests)
+- [5XX](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/500) (Internal Server Errors)
+
+Use the `max_retries` request option to configure this behavior.
+
+```python
+client.agent.create(..., request_options={
+    "max_retries": 1
+})
+```
+
+### Timeouts
+
+The SDK defaults to a 60 second timeout. You can configure this with a timeout option at the client or request level.
+
+```python
+
+from phenoml import phenoml
+
+client = phenoml(
+    ...,
+    timeout=20.0,
+)
+
+
+# Override timeout for a specific method
+client.agent.create(..., request_options={
+    "timeout_in_seconds": 1
+})
+```
+
+### Custom Client
+
+You can override the `httpx` client to customize it for your use-case. Some common use-cases include support for proxies
+and transports.
+
+```python
+import httpx
+from phenoml import phenoml
+
+client = phenoml(
+    ...,
+    httpx_client=httpx.Client(
+        proxies="http://my.test.proxy.example.com",
+        transport=httpx.HTTPTransport(local_address="0.0.0.0"),
+    ),
+)
+```
+
+## Contributing
+
+While we value open-source contributions to this SDK, this library is generated programmatically.
+Additions made directly to this library would have to be moved over to our generation code,
+otherwise they would be overwritten upon the next generated release. Feel free to open a PR as
+a proof of concept, but know that we will not be able to merge it as-is. We suggest opening
+an issue first to discuss with us!
+
+On the other hand, contributions to the README are always very welcome!
+

phenoml-0.0.1/README.md

@@ -0,0 +1,165 @@
+# Phenoml Python Library
+
+[![fern shield](https://img.shields.io/badge/%F0%9F%8C%BF-Built%20with%20Fern-brightgreen)](https://buildwithfern.com?utm_source=github&utm_medium=github&utm_campaign=readme&utm_source=https%3A%2F%2Fgithub.com%2Ffern-demo%2Fphenoml-python-sdk)
+[![pypi](https://img.shields.io/pypi/v/phenoml)](https://pypi.python.org/pypi/phenoml)
+
+The Phenoml Python library provides convenient access to the Phenoml API from Python.
+
+## Installation
+
+```sh
+pip install phenoml
+```
+
+## Reference
+
+A full reference for this library is available [here](https://github.com/phenoml/phenoml-python-sdk/blob/HEAD/./reference.md).
+
+## Usage
+
+Instantiate and use the client with the following:
+
+```python
+from phenoml import Client
+
+client = Client(
+    username="your_username",
+    password="your_password",
+    base_url="https://your-phenoml-instance.com"
+)
+
+client.agent.create(
+    name="name",
+    prompts=["prompt_123", "prompt_456"],
+    is_active=True,
+)
+```
+
+## Async Client
+
+The SDK also exports an `async` client so that you can make non-blocking calls to our API.
+
+```python
+import asyncio
+
+from phenoml import AsyncClient
+
+client = AsyncClient(
+    username="your_username",
+    password="your_password",
+    base_url="https://your-phenoml-instance.com"
+)
+
+
+async def main() -> None:
+    await client.initialize()  # Generate token from username/password
+    await client.agent.create(
+        name="name",
+        prompts=["prompt_123", "prompt_456"],
+        is_active=True,
+    )
+
+
+asyncio.run(main())
+```
+
+## Exception Handling
+
+When the API returns a non-success status code (4xx or 5xx response), a subclass of the following error
+will be thrown.
+
+```python
+from phenoml.core.api_error import ApiError
+
+try:
+    client.agent.create(...)
+except ApiError as e:
+    print(e.status_code)
+    print(e.body)
+```
+
+## Advanced
+
+### Access Raw Response Data
+
+The SDK provides access to raw response data, including headers, through the `.with_raw_response` property.
+The `.with_raw_response` property returns a "raw" client that can be used to access the `.headers` and `.data` attributes.
+
+```python
+from phenoml import phenoml
+
+client = phenoml(
+    ...,
+)
+response = client.agent.with_raw_response.create(...)
+print(response.headers)  # access the response headers
+print(response.data)  # access the underlying object
+```
+
+### Retries
+
+The SDK is instrumented with automatic retries with exponential backoff. A request will be retried as long
+as the request is deemed retryable and the number of retry attempts has not grown larger than the configured
+retry limit (default: 2).
+
+A request is deemed retryable when any of the following HTTP status codes is returned:
+
+- [408](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/408) (Timeout)
+- [429](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/429) (Too Many Requests)
+- [5XX](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status/500) (Internal Server Errors)
+
+Use the `max_retries` request option to configure this behavior.
+
+```python
+client.agent.create(..., request_options={
+    "max_retries": 1
+})
+```
+
+### Timeouts
+
+The SDK defaults to a 60 second timeout. You can configure this with a timeout option at the client or request level.
+
+```python
+
+from phenoml import phenoml
+
+client = phenoml(
+    ...,
+    timeout=20.0,
+)
+
+
+# Override timeout for a specific method
+client.agent.create(..., request_options={
+    "timeout_in_seconds": 1
+})
+```
+
+### Custom Client
+
+You can override the `httpx` client to customize it for your use-case. Some common use-cases include support for proxies
+and transports.
+
+```python
+import httpx
+from phenoml import phenoml
+
+client = phenoml(
+    ...,
+    httpx_client=httpx.Client(
+        proxies="http://my.test.proxy.example.com",
+        transport=httpx.HTTPTransport(local_address="0.0.0.0"),
+    ),
+)
+```
+
+## Contributing
+
+While we value open-source contributions to this SDK, this library is generated programmatically.
+Additions made directly to this library would have to be moved over to our generation code,
+otherwise they would be overwritten upon the next generated release. Feel free to open a PR as
+a proof of concept, but know that we will not be able to merge it as-is. We suggest opening
+an issue first to discuss with us!
+
+On the other hand, contributions to the README are always very welcome!

phenoml-0.0.1/pyproject.toml

@@ -0,0 +1,84 @@
+[project]
+name = "phenoml"
+
+[tool.poetry]
+name = "phenoml"
+version = "0.0.1"
+description = ""
+readme = "README.md"
+authors = []
+keywords = []
+
+classifiers = [
+    "Intended Audience :: Developers",
+    "Programming Language :: Python",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Operating System :: OS Independent",
+    "Operating System :: POSIX",
+    "Operating System :: MacOS",
+    "Operating System :: POSIX :: Linux",
+    "Operating System :: Microsoft :: Windows",
+    "Topic :: Software Development :: Libraries :: Python Modules",
+    "Typing :: Typed"
+]
+packages = [
+    { include = "phenoml", from = "src"}
+]
+
+[project.urls]
+Repository = 'https://github.com/fern-demo/phenoml-python-sdk'
+
+[tool.poetry.dependencies]
+python = "^3.8"
+httpx = ">=0.21.2"
+pydantic = ">= 1.9.2"
+pydantic-core = ">=2.18.2"
+typing_extensions = ">= 4.0.0"
+
+[tool.poetry.group.dev.dependencies]
+mypy = "==1.13.0"
+pytest = "^7.4.0"
+pytest-asyncio = "^0.23.5"
+python-dateutil = "^2.9.0"
+types-python-dateutil = "^2.9.0.20240316"
+ruff = "==0.11.5"
+
+[tool.pytest.ini_options]
+testpaths = [ "tests" ]
+asyncio_mode = "auto"
+
+[tool.mypy]
+plugins = ["pydantic.mypy"]
+
+[tool.ruff]
+line-length = 120
+
+[tool.ruff.lint]
+select = [
+    "E",  # pycodestyle errors
+    "F",  # pyflakes
+    "I",  # isort
+]
+ignore = [
+    "E402",  # Module level import not at top of file
+    "E501",  # Line too long
+    "E711",  # Comparison to `None` should be `cond is not None`
+    "E712",  # Avoid equality comparisons to `True`; use `if ...:` checks
+    "E721",  # Use `is` and `is not` for type comparisons, or `isinstance()` for insinstance checks
+    "E722",  # Do not use bare `except`
+    "E731",  # Do not assign a `lambda` expression, use a `def`
+    "F821",  # Undefined name
+    "F841"   # Local variable ... is assigned to but never used
+]
+
+[tool.ruff.lint.isort]
+section-order = ["future", "standard-library", "third-party", "first-party"]
+
+[build-system]
+requires = ["poetry-core"]
+build-backend = "poetry.core.masonry.api"

phenoml-0.0.1/src/phenoml/__init__.py

@@ -0,0 +1,30 @@
+# This file was auto-generated by Fern from our API Definition.
+
+# isort: skip_file
+
+from . import agent, authtoken, cohort, construe, lang2fhir, tools
+from .client import Asyncphenoml, phenoml
+from .environment import phenomlEnvironment
+from .version import __version__
+from .wrapper_client import PhenoMLClient, AsyncPhenoMLClient
+
+# Primary client classes (recommended)
+Client = PhenoMLClient
+AsyncClient = AsyncPhenoMLClient
+
+__all__ = [
+    "Asyncphenoml",
+    "AsyncPhenoMLClient", 
+    "AsyncClient",  # Primary async client
+    "PhenoMLClient",
+    "Client",  # Primary sync client
+    "__version__",
+    "agent",
+    "authtoken",
+    "cohort",
+    "construe",
+    "lang2fhir",
+    "phenoml",  # Base client (for advanced users)
+    "phenomlEnvironment",
+    "tools",
+]

phenoml-0.0.1/src/phenoml/agent/__init__.py

@@ -0,0 +1,58 @@
+# This file was auto-generated by Fern from our API Definition.
+
+# isort: skip_file
+
+from .types import (
+    AgentChatResponse,
+    AgentCreateRequestProvider,
+    AgentCreateRequestProviderItem,
+    AgentDeleteResponse,
+    AgentFhirConfig,
+    AgentListResponse,
+    AgentPromptsResponse,
+    AgentResponse,
+    AgentTemplate,
+    AgentTemplateProvider,
+    AgentTemplateProviderItem,
+    AgentUpdateRequestProvider,
+    AgentUpdateRequestProviderItem,
+    ChatFhirClientConfig,
+    JsonPatch,
+    JsonPatchOperation,
+    JsonPatchOperationOp,
+    PromptTemplate,
+    SuccessResponse,
+)
+from .errors import BadRequestError, ForbiddenError, InternalServerError, NotFoundError, UnauthorizedError
+from . import prompts
+from .prompts import PromptsDeleteResponse, PromptsListResponse
+
+__all__ = [
+    "AgentChatResponse",
+    "AgentCreateRequestProvider",
+    "AgentCreateRequestProviderItem",
+    "AgentDeleteResponse",
+    "AgentFhirConfig",
+    "AgentListResponse",
+    "AgentPromptsResponse",
+    "AgentResponse",
+    "AgentTemplate",
+    "AgentTemplateProvider",
+    "AgentTemplateProviderItem",
+    "AgentUpdateRequestProvider",
+    "AgentUpdateRequestProviderItem",
+    "BadRequestError",
+    "ChatFhirClientConfig",
+    "ForbiddenError",
+    "InternalServerError",
+    "JsonPatch",
+    "JsonPatchOperation",
+    "JsonPatchOperationOp",
+    "NotFoundError",
+    "PromptTemplate",
+    "PromptsDeleteResponse",
+    "PromptsListResponse",
+    "SuccessResponse",
+    "UnauthorizedError",
+    "prompts",
+]