phasorpy 0.3__tar.gz → 0.4__tar.gz

{phasorpy-0.3 → phasorpy-0.4}/LICENSE.txt

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2022-2024 PhasorPy Contributors
+Copyright (c) 2022-2025 PhasorPy Contributors
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

{phasorpy-0.3/src/phasorpy.egg-info → phasorpy-0.4}/PKG-INFO

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.2
 Name: phasorpy
-Version: 0.3
+Version: 0.4
 Summary: Analysis of fluorescence lifetime and hyperspectral images using the phasor approach
 Author: PhasorPy Contributors
 License: MIT
@@ -52,6 +52,7 @@ Provides-Extra: all
 Requires-Dist: lfdfiles>=2024.5.24; extra == "all"
 Requires-Dist: sdtfile>=2024.5.24; extra == "all"
 Requires-Dist: ptufile>=2024.9.14; extra == "all"
+Requires-Dist: liffile>=2025.1.30; extra == "all"
 
 # PhasorPy
 
@@ -61,7 +62,7 @@ lifetime and hyperspectral images using the phasor approach.
 - [Homepage](https://www.phasorpy.org)
 - [Documentation](https://www.phasorpy.org/docs/stable/)
 - [Source code](https://github.com/phasorpy/phasorpy)
-- [Download releases](https://pypi.org/project/phasorpy/#files)
+- [Install with pip](https://pypi.org/project/phasorpy/) or [conda](https://anaconda.org/conda-forge/phasorpy).
 - [Data files](https://zenodo.org/communities/phasorpy/)
 - [Issues and questions](https://github.com/phasorpy/phasorpy/issues)
 

{phasorpy-0.3 → phasorpy-0.4}/README.md

@@ -6,7 +6,7 @@ lifetime and hyperspectral images using the phasor approach.
 - [Homepage](https://www.phasorpy.org)
 - [Documentation](https://www.phasorpy.org/docs/stable/)
 - [Source code](https://github.com/phasorpy/phasorpy)
-- [Download releases](https://pypi.org/project/phasorpy/#files)
+- [Install with pip](https://pypi.org/project/phasorpy/) or [conda](https://anaconda.org/conda-forge/phasorpy).
 - [Data files](https://zenodo.org/communities/phasorpy/)
 - [Issues and questions](https://github.com/phasorpy/phasorpy/issues)
 

{phasorpy-0.3 → phasorpy-0.4}/docs/_static/switcher.json

@@ -1,15 +1,20 @@
 [
   {
     "name": "dev",
-    "version": "0.4",
+    "version": "0.5",
     "url": "https://www.phasorpy.org/docs/dev/"
   },
   {
-    "name": "0.3 (stable)",
-    "version": "0.3",
+    "name": "0.4 (stable)",
+    "version": "0.4",
     "url": "https://www.phasorpy.org/docs/stable/",
     "preferred": true
   },
+  {
+    "name": "0.3",
+    "version": "0.3",
+    "url": "https://www.phasorpy.org/docs/v0.3/"
+  },
   {
     "name": "0.2",
     "version": "0.2",

{phasorpy-0.3 → phasorpy-0.4}/docs/conf.py

@@ -18,7 +18,7 @@ sphinx_gallery.gen_rst.EXAMPLE_HEADER = (
 # project information
 
 project = 'PhasorPy'
-copyright = '2022-2024 PhasorPy Contributors'
+copyright = '2022-2025 PhasorPy Contributors'
 author = 'PhasorPy Contributors'
 
 import phasorpy

{phasorpy-0.3 → phasorpy-0.4}/docs/index.rst

@@ -40,7 +40,8 @@ The library's source code and documentation are maintained in the
 `PhasorPy repository on GitHub <https://github.com/phasorpy/phasorpy>`_.
 
 Releases can be downloaded and installed from the
-`PhasorPy project on PyPI <https://pypi.org/project/phasorpy/>`_.
+`PhasorPy project on PyPI <https://pypi.org/project/phasorpy/>`_
+or `conda-forge <https://anaconda.org/conda-forge/phasorpy>`_.
 
 Sample data files used in tutorials and testing are available from the
 `PhasorPy community on Zenodo <https://zenodo.org/communities/phasorpy>`_.

{phasorpy-0.3 → phasorpy-0.4}/docs/license.rst

@@ -1,7 +1,7 @@
 MIT License
 ===========
 
-Copyright © 2022-2024 :ref:`PhasorPy Contributors <contributors>`
+Copyright © 2022-2025 :ref:`PhasorPy Contributors <contributors>`
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the “Software”), to deal

{phasorpy-0.3 → phasorpy-0.4}/docs/release.rst

@@ -10,14 +10,47 @@ documentation and maintenance changes.
     It is not nearly feature complete.
     Large, backwards-incompatible changes may occur between revisions.
 
+0.4 (2025.1.30)
+---------------
+
+This is the fourth alpha release of the PhasorPy library.
+It contains several bug fixes and many improvements, mostly to the ``phasorpy.io`` module.
+File reader functions are now named ``signal_from_*`` or ``phasor_from_*``
+and have a more consistent API.
+Point mode PTU files, LIF files containing phasor coordinates or hyperspectral
+signals, and FLIM LABS JSON files are supported.
+PhasorPy releases are now available on conda-forge.
+This release supports Python 3.10 to 3.13.
+
+What's Changed
+..............
+
+* Bump version by @cgohlke in https://github.com/phasorpy/phasorpy/pull/163
+* Support labelled signal axes by @cgohlke in https://github.com/phasorpy/phasorpy/pull/166
+* Update copyright year by @cgohlke in https://github.com/phasorpy/phasorpy/pull/168
+* Return array coordinates from files in normal units by @cgohlke in https://github.com/phasorpy/phasorpy/pull/169
+* Document availability on conda-forge by @cgohlke in https://github.com/phasorpy/phasorpy/pull/170
+* Fix RST code is two backticks by @cgohlke in https://github.com/phasorpy/phasorpy/pull/171
+* Support reading point mode PTU files by @cgohlke in https://github.com/phasorpy/phasorpy/pull/172
+* Fix phasor_calibrate for handling higher harmonics than size of first dimension of reference_real by @bruno-pannunzio in https://github.com/phasorpy/phasorpy/pull/176
+* Improve io module by @cgohlke in https://github.com/phasorpy/phasorpy/pull/177
+* Add support for Leica LIF files by @cgohlke in https://github.com/phasorpy/phasorpy/pull/178
+* Add support for new FLIM LABS JSON format by @cgohlke in https://github.com/phasorpy/phasorpy/pull/179
+* Reformat with black 25.1 by @cgohlke in https://github.com/phasorpy/phasorpy/pull/180
+* Release v0.4 by @cgohlke in https://github.com/phasorpy/phasorpy/pull/181
+* Fixes for liffile 2025.1.30 by @cgohlke in https://github.com/phasorpy/phasorpy/pull/182
+
+**Full Changelog**: https://github.com/phasorpy/phasorpy/compare/v0.3...v0.4
+
+
 0.3 (2024.12.16)
 ----------------
 
 This is the third alpha release of the PhasorPy library.
-It fixes the averaging of phasor coordinates in the `phasor_center` and
-`phasor_calibrate` functions, replaces the `phasor_filter` function
-with `phasor_filter_median`, adds support for multiple harmonics to
-`phasor_threshold`, and adds the `real_imspector_tiff` function to read
+It fixes the averaging of phasor coordinates in the ``phasor_center`` and
+``phasor_calibrate`` functions, replaces the ``phasor_filter`` function
+with ``phasor_filter_median``, adds support for multiple harmonics to
+``phasor_threshold``, and adds the ``read_imspector_tiff`` function to read
 ImSpector FLIM TIFF files. This release supports Python 3.10 to 3.13.
 
 What's Changed

{phasorpy-0.3 → phasorpy-0.4}/pyproject.toml

@@ -77,6 +77,7 @@ all = [
     "lfdfiles>=2024.5.24",
     "sdtfile>=2024.5.24",
     "ptufile>=2024.9.14",
+    "liffile>=2025.1.30",
 ]
 
 [tool.setuptools]
@@ -187,5 +188,5 @@ norecursedirs = [
 
 [tool.cibuildwheel]
 skip = "pp* cp37* cp38* cp39* *musllinux* *i686 *ppc64le *s390x cp39*win*arm64 cp310*win*arm64"
-test-requires = ["lfdfiles", "sdtfile", "ptufile", "pytest", "pytest-cov", "pytest-runner", "pytest-doctestplus", "coverage"]
+test-requires = ["lfdfiles", "sdtfile", "ptufile", "liffile", "pytest", "pytest-cov", "pytest-runner", "pytest-doctestplus", "coverage"]
 test-command = "pytest {project}/tests"