phasor-handler 2.2.2.post1__tar.gz → 2.2.3__tar.gz

{phasor_handler-2.2.2.post1/phasor_handler.egg-info → phasor_handler-2.2.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: phasor-handler
-Version: 2.2.2.post1
+Version: 2.2.3
 Summary: A PyQt6 GUI toolbox for processing two-photon phasor imaging data
 Author-email: Josia Shemuel <joshemuel@users.noreply.github.com>
 License: MIT License
@@ -58,7 +58,7 @@ Requires-Dist: black>=22.0.0; extra == "dev"
 Requires-Dist: flake8>=4.0.0; extra == "dev"
 Dynamic: license-file
 
-# Phasor-Handler v2.0 (Windows)
+# Phasor-Handler (Windows)
 
 Phasor Handler is a toolbox for processing raw two-photon phasor imaging data: **convert → register → explore → extract calcium traces**.  
 It provides a PyQt6 GUI for viewing registered or raw stacks (Ch1/Ch2), z-projections (std/max/mean), drawing/storing ROIs, overlaying stimulated ROIs from metadata, and exporting ROI traces.

{phasor_handler-2.2.2.post1 → phasor_handler-2.2.3}/README.md

@@ -1,4 +1,4 @@
-# Phasor-Handler v2.0 (Windows)
+# Phasor-Handler (Windows)
 
 Phasor Handler is a toolbox for processing raw two-photon phasor imaging data: **convert → register → explore → extract calcium traces**.  
 It provides a PyQt6 GUI for viewing registered or raw stacks (Ch1/Ch2), z-projections (std/max/mean), drawing/storing ROIs, overlaying stimulated ROIs from metadata, and exporting ROI traces.

{phasor_handler-2.2.2.post1 → phasor_handler-2.2.3}/phasor_handler/app.py

@@ -1,3 +1,7 @@
+# TODO Update ROI boundary for ellipse so that it does not get redefined.
+# TODO include more metadata for mini2p
+# TODO Add fourth tab for trace analysis
+
 import sys
 import os
 import subprocess

{phasor_handler-2.2.2.post1 → phasor_handler-2.2.3}/phasor_handler/scripts/meta_reader.py

@@ -1,3 +1,5 @@
+# TODO read from .txt files of CHA and CHB channels if available
+
 #!/usr/bin/env python3
 """
 meta_reader.py
@@ -402,12 +404,16 @@ def process_mini2p_folder(folder_path: str):
         if os.path.isdir(subdir_path):
             folders[subdir] = subdir_path
             tdms_files = [os.path.join(subdir_path, f) for f in os.listdir(subdir_path) if f.endswith('.tdms')]
-            if tdms_files:
-                path_df[subdir] = tdms_files
+            txt_files = [os.path.join(subdir_path, f) for f in os.listdir(subdir_path) if f.endswith('.txt')]
+
+            if txt_files:
+                path_df[subdir] = (tdms_files, txt_files)
+            elif tdms_files:
+                path_df[subdir] = (tdms_files, None)
     
     # Load TDMS data into nested dict structure
     tdms_data = {}
-    for folder_name, tdms_files in path_df.items():
+    for folder_name, (tdms_files, txt_files) in path_df.items():
         if folder_name == "SyncInformation":
             continue