pg-sui 1.6.14.dev8__tar.gz → 1.6.14.dev10__tar.gz

{pg_sui-1.6.14.dev8 → pg_sui-1.6.14.dev10}/.github/workflows/conda.yaml

@@ -71,6 +71,8 @@ jobs:
         shell: bash -l {0}
     env:
       MPLCONFIGDIR: /tmp/mpl
+      ANACONDA_API_TOKEN: ${{ secrets.CONDA_UPLOAD_TOKEN }}
+      CONDA_UPLOAD_TOKEN: ${{ secrets.CONDA_UPLOAD_TOKEN }}
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -103,6 +105,8 @@ jobs:
           CLEAN_VERSION=${CLEAN_VERSION//+/.}
           export PKG_VERSION=${CLEAN_VERSION:-1.6.8}
           export SETUPTOOLS_SCM_PRETEND_VERSION=${PKG_VERSION}
+          # Help conda/jinja resolve version even if .git metadata is absent
+          export GIT_DESCRIBE_TAG=${PKG_VERSION}
           echo "Building conda package version: ${PKG_VERSION}"
           conda build conda/recipe --output-folder conda/dist -c btmartin721 -c conda-forge -c bioconda -c pytorch -c defaults
 
@@ -112,14 +116,21 @@ jobs:
           name: conda-packages
           path: conda/dist/**/*.tar.bz2
 
+      - name: Verify upload token
+        run: |
+          set -euo pipefail
+          if [[ -z "${CONDA_UPLOAD_TOKEN:-}" ]]; then
+            echo "CONDA_UPLOAD_TOKEN secret is missing; set it in the repository or organization secrets."
+            exit 1
+          fi
+          echo "::add-mask::${CONDA_UPLOAD_TOKEN}"
+
       - name: Publish to Anaconda
-        env:
-          ANACONDA_API_TOKEN: ${{ secrets.CONDA_UPLOAD_TOKEN }}
         run: |
           set -euo pipefail
-          if [[ -z "${ANACONDA_API_TOKEN:-}" ]]; then
-            echo "CONDA_UPLOAD_TOKEN not set; skipping upload."
-            exit 0
+          mapfile -t files < <(find conda/dist -type f \( -name '*.tar.bz2' -o -name '*.conda' \))
+          if [[ ${#files[@]} -eq 0 ]]; then
+            echo "No conda artifacts found to upload."
+            exit 1
           fi
-          files=$(find conda/dist -type f \( -name '*.tar.bz2' -o -name '*.conda' \))
-          anaconda -t "$ANACONDA_API_TOKEN" upload --label main --user btmartin721 $files
+          anaconda -t "$CONDA_UPLOAD_TOKEN" upload --label main --user btmartin721 "${files[@]}"

{pg_sui-1.6.14.dev8 → pg_sui-1.6.14.dev10}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pg-sui
-Version: 1.6.14.dev8
+Version: 1.6.14.dev10
 Summary: Python machine and deep learning API to impute missing genotypes
 Author-email: "Drs. Bradley T. Martin and Tyler K. Chafin" <evobio721@gmail.com>
 Maintainer-email: "Dr. Bradley T. Martin" <evobio721@gmail.com>

{pg_sui-1.6.14.dev8 → pg_sui-1.6.14.dev10}/conda/recipe/conda_build_config.yaml

@@ -6,6 +6,10 @@ python:
 numpy:
   - 2.1
 
+script_env:
+  - PKG_VERSION
+  - SETUPTOOLS_SCM_PRETEND_VERSION
+
 # Keep channel ordering consistent during solve
 channel_sources:
   - btmartin721,conda-forge,bioconda,pytorch,defaults

{pg_sui-1.6.14.dev8 → pg_sui-1.6.14.dev10}/conda/recipe/meta.yaml

@@ -1,6 +1,6 @@
 # meta.yaml - pg-sui conda recipe
-# Normalize PKG_VERSION to conda-friendly format (strip leading "v", replace hyphens/plus with dots)
-{% set raw_version = environ.get("PKG_VERSION") | default("1.6.8", true) %}
+# Normalize version from CI/exported variables (PKG_VERSION/SETUPTOOLS_SCM_PRETEND_VERSION/GIT_DESCRIBE_TAG), fallback to default.
+{% set raw_version = environ.get("SETUPTOOLS_SCM_PRETEND_VERSION") or environ.get("PKG_VERSION") or environ.get("GIT_DESCRIBE_TAG") or "1.6.8" %}
 {% set version = raw_version.lstrip("v").replace("-", ".").replace("+", ".") %}
 
 package:
@@ -21,6 +21,7 @@ requirements:
     - pip
     - setuptools
     - wheel
+    - setuptools-scm
   run:
     - python {{ python }}
     - matplotlib

{pg_sui-1.6.14.dev8 → pg_sui-1.6.14.dev10}/pg_sui.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pg-sui
-Version: 1.6.14.dev8
+Version: 1.6.14.dev10
 Summary: Python machine and deep learning API to impute missing genotypes
 Author-email: "Drs. Bradley T. Martin and Tyler K. Chafin" <evobio721@gmail.com>
 Maintainer-email: "Dr. Bradley T. Martin" <evobio721@gmail.com>

{pg_sui-1.6.14.dev8 → pg_sui-1.6.14.dev10}/pgsui/_version.py

@@ -28,7 +28,7 @@ version_tuple: VERSION_TUPLE
 commit_id: COMMIT_ID
 __commit_id__: COMMIT_ID
 
-__version__ = version = '1.6.14.dev8'
-__version_tuple__ = version_tuple = (1, 6, 14, 'dev8')
+__version__ = version = '1.6.14.dev10'
+__version_tuple__ = version_tuple = (1, 6, 14, 'dev10')
 
-__commit_id__ = commit_id = 'g6f66c25eb'
+__commit_id__ = commit_id = 'g8780b9bd7'