pg-sui 1.6.14.dev5__tar.gz → 1.6.14.dev6__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (163) hide show
  1. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/.github/workflows/conda.yaml +1 -1
  2. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/PKG-INFO +1 -1
  3. pg_sui-1.6.14.dev6/conda/recipe/conda_build_config.yaml +13 -0
  4. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/conda/recipe/meta.yaml +4 -4
  5. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pg_sui.egg-info/PKG-INFO +1 -1
  6. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pg_sui.egg-info/SOURCES.txt +1 -0
  7. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/_version.py +3 -3
  8. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/.dockerignore +0 -0
  9. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/.gitattributes +0 -0
  10. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/.github/workflows/docker.yaml +0 -0
  11. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/.github/workflows/release.yaml +0 -0
  12. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/.gitignore +0 -0
  13. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/.readthedocs.yaml +0 -0
  14. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/.vscode/launch.json +0 -0
  15. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/.vscode/settings.json +0 -0
  16. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/Dockerfile +0 -0
  17. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/LICENSE +0 -0
  18. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/MANIFEST.in +0 -0
  19. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/README.md +0 -0
  20. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/changelog.md +0 -0
  21. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/conda/recipe/bld.bat +0 -0
  22. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/conda/recipe/build.sh +0 -0
  23. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/configs/config.yaml +0 -0
  24. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/Makefile +0 -0
  25. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/_static/custom.css +0 -0
  26. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/_templates +0 -0
  27. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/about.rst +0 -0
  28. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/changelog.rst +0 -0
  29. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/conf.py +0 -0
  30. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/gui.rst +0 -0
  31. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/implement_new_models.rst +0 -0
  32. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/imputer_methods.rst +0 -0
  33. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/index.rst +0 -0
  34. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/install.rst +0 -0
  35. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/make.bat +0 -0
  36. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/modules.rst +0 -0
  37. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/non_ml_imputers.rst +0 -0
  38. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/pgsui.data_processing.rst +0 -0
  39. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/pgsui.impute.rst +0 -0
  40. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/pgsui.impute.supervised.imputers.rst +0 -0
  41. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/pgsui.impute.supervised.rst +0 -0
  42. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/pgsui.impute.unsupervised.imputers.rst +0 -0
  43. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/pgsui.impute.unsupervised.models.rst +0 -0
  44. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/pgsui.impute.unsupervised.rst +0 -0
  45. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/pgsui.rst +0 -0
  46. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/pgsui.utils.rst +0 -0
  47. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/supervised_imputers.rst +0 -0
  48. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/tutorial.rst +0 -0
  49. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/docs/build/unsupervised_imputers.rst +0 -0
  50. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/environment.yml +0 -0
  51. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/img/NLPCA_Model_Architecture.svg +0 -0
  52. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/img/VAE_Model_Architecture_rotated.svg +0 -0
  53. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/img/pgsui-logo-faded-thumb.png +0 -0
  54. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/img/pgsui-logo-faded.png +0 -0
  55. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/img/pgsui-logo-notfaded.png +0 -0
  56. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/multiqc_config.yaml +0 -0
  57. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/notebooks/run_pgsui_dev.ipynb +0 -0
  58. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/package-lock.json +0 -0
  59. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pg_sui.egg-info/dependency_links.txt +0 -0
  60. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pg_sui.egg-info/entry_points.txt +0 -0
  61. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pg_sui.egg-info/requires.txt +0 -0
  62. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pg_sui.egg-info/top_level.txt +0 -0
  63. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/__init__.py +0 -0
  64. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/cli.py +0 -0
  65. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/data_processing/__init__.py +0 -0
  66. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/data_processing/config.py +0 -0
  67. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/data_processing/containers.py +0 -0
  68. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/data_processing/transformers.py +0 -0
  69. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/__init__.py +0 -0
  70. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/__main__.py +0 -0
  71. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/extra-resources/.gitkeep +0 -0
  72. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/icons/icons/1024x1024.png +0 -0
  73. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/icons/icons/128x128.png +0 -0
  74. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/icons/icons/16x16.png +0 -0
  75. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/icons/icons/24x24.png +0 -0
  76. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/icons/icons/256x256.png +0 -0
  77. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/icons/icons/32x32.png +0 -0
  78. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/icons/icons/48x48.png +0 -0
  79. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/icons/icons/512x512.png +0 -0
  80. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/icons/icons/64x64.png +0 -0
  81. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/icons/icons/icon.icns +0 -0
  82. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/icons/icons/icon.ico +0 -0
  83. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/main.js +0 -0
  84. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/package-lock.json +0 -0
  85. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/package.json +0 -0
  86. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/preload.js +0 -0
  87. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/server.py +0 -0
  88. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/ui/logo.png +0 -0
  89. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/ui/renderer.js +0 -0
  90. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/ui/styles.css +0 -0
  91. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/app/ui/ui_shim.js +0 -0
  92. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/bootstrap.py +0 -0
  93. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/launch.py +0 -0
  94. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/electron/package.json +0 -0
  95. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/example_data/__init__.py +0 -0
  96. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/example_data/phylip_files/__init__.py +0 -0
  97. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/example_data/phylip_files/test.phy +0 -0
  98. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/example_data/popmaps/__init__.py +0 -0
  99. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/example_data/popmaps/phylogen_nomx.popmap +0 -0
  100. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/example_data/structure_files/__init__.py +0 -0
  101. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/example_data/structure_files/test.pops.2row.allsites.str +0 -0
  102. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/example_data/vcf_files/phylogen_subset14K.vcf.gz +0 -0
  103. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/example_data/vcf_files/phylogen_subset14K.vcf.gz.tbi +0 -0
  104. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/__init__.py +0 -0
  105. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/deterministic/imputers/allele_freq.py +0 -0
  106. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/deterministic/imputers/mode.py +0 -0
  107. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/deterministic/imputers/nmf.py +0 -0
  108. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/deterministic/imputers/phylo.py +0 -0
  109. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/deterministic/imputers/ref_allele.py +0 -0
  110. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/supervised/__init__.py +0 -0
  111. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/supervised/base.py +0 -0
  112. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/supervised/imputers/__init__.py +0 -0
  113. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/supervised/imputers/hist_gradient_boosting.py +0 -0
  114. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/supervised/imputers/random_forest.py +0 -0
  115. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/__init__.py +0 -0
  116. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/base.py +0 -0
  117. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/callbacks.py +0 -0
  118. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/imputers/__init__.py +0 -0
  119. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/imputers/autoencoder.py +0 -0
  120. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/imputers/nlpca.py +0 -0
  121. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/imputers/ubp.py +0 -0
  122. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/imputers/vae.py +0 -0
  123. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/loss_functions.py +0 -0
  124. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/models/__init__.py +0 -0
  125. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/models/autoencoder_model.py +0 -0
  126. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/models/nlpca_model.py +0 -0
  127. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/models/ubp_model.py +0 -0
  128. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/models/vae_model.py +0 -0
  129. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/impute/unsupervised/nn_scorers.py +0 -0
  130. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/utils/__init__.py +0 -0
  131. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/utils/classification_viz.py +0 -0
  132. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/utils/logging_utils.py +0 -0
  133. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/utils/misc.py +0 -0
  134. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/utils/plotting.py +0 -0
  135. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/utils/pretty_metrics.py +0 -0
  136. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/utils/scorers.py +0 -0
  137. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pyproject.toml +0 -0
  138. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/scripts/build_gui_dists.zsh +0 -0
  139. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/scripts/download_training_data.zsh +0 -0
  140. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/scripts/pg_sui.py +0 -0
  141. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/scripts/run_iqtree.zsh +0 -0
  142. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/scripts/start_pgsui.sh +0 -0
  143. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/scripts/stop_pgsui.sh +0 -0
  144. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/scripts/summarize_input_metadata.py +0 -0
  145. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/scripts/vcf2phy.py +0 -0
  146. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/scripts/vcf2phy.zsh +0 -0
  147. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/setup.cfg +0 -0
  148. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/snpiosp/__init__.py +0 -0
  149. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/snpiosp/compare_dataset_stats.py +0 -0
  150. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/snpiosp/run_snpiosp.py +0 -0
  151. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/snpiosp/snpiosp.py +0 -0
  152. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/tests/conftest.py +0 -0
  153. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/tests/test_config.py +0 -0
  154. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/tests/test_deterministic_imputers.py +0 -0
  155. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/tests/test_imputers_unsupervised.py +0 -0
  156. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/tests/test_scorers.py +0 -0
  157. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/tests/test_transformers.py +0 -0
  158. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/workflow/envs/tree_sim.yml +0 -0
  159. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/workflow/profile/config.yaml +0 -0
  160. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/workflow/run_sim1.smk +0 -0
  161. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/workflow/scripts/sim_treeparams.py +0 -0
  162. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/workflow/sim1_config.yaml +0 -0
  163. {pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/workflow/t0.01_c0.1_a0.0_gtrgamma.phylip +0 -0
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/.github/workflows/conda.yaml RENAMED
@@ -104,7 +104,7 @@ jobs:
104
104
  export PKG_VERSION=${CLEAN_VERSION:-1.6.8}
105
105
  export SETUPTOOLS_SCM_PRETEND_VERSION=${PKG_VERSION}
106
106
  echo "Building conda package version: ${PKG_VERSION}"
107
- conda build conda/recipe --output-folder conda/dist -c btmartin721 -c conda-forge -c defaults
107
+ conda build conda/recipe --output-folder conda/dist -c btmartin721 -c conda-forge -c bioconda -c pytorch -c defaults
108
108
 
109
109
  - name: Upload conda artifacts
110
110
  uses: actions/upload-artifact@v4
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: pg-sui
3
- Version: 1.6.14.dev5
3
+ Version: 1.6.14.dev6
4
4
  Summary: Python machine and deep learning API to impute missing genotypes
5
5
  Author-email: "Drs. Bradley T. Martin and Tyler K. Chafin" <evobio721@gmail.com>
6
6
  Maintainer-email: "Dr. Bradley T. Martin" <evobio721@gmail.com>
pg_sui-1.6.14.dev6/conda/recipe/conda_build_config.yaml ADDED
@@ -0,0 +1,13 @@
1
+ # Build variants for pg-sui conda package
2
+
3
+ python:
4
+ - 3.11
5
+
6
+ numpy:
7
+ - 2.1
8
+
9
+ # Keep channel ordering consistent during solve
10
+ channel_sources:
11
+ - btmartin721,conda-forge,bioconda,pytorch,defaults
12
+ channel_targets:
13
+ - btmartin721 main
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/conda/recipe/meta.yaml RENAMED
@@ -16,19 +16,19 @@ build:
16
16
 
17
17
  requirements:
18
18
  host:
19
- - python >=3.11
19
+ - python {{ python }}
20
20
  - pip
21
21
  - setuptools
22
22
  - wheel
23
23
  run:
24
- - python >=3.11
24
+ - python {{ python }}
25
25
  - matplotlib
26
- - numpy >=2.1
26
+ - numpy {{ numpy }}
27
27
  - pandas >=2.2.2
28
28
  - scikit-learn >=1.4
29
29
  - scipy
30
30
  - seaborn
31
- - torch
31
+ - pytorch
32
32
  - tqdm
33
33
  - toytree
34
34
  - optuna
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pg_sui.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: pg-sui
3
- Version: 1.6.14.dev5
3
+ Version: 1.6.14.dev6
4
4
  Summary: Python machine and deep learning API to impute missing genotypes
5
5
  Author-email: "Drs. Bradley T. Martin and Tyler K. Chafin" <evobio721@gmail.com>
6
6
  Maintainer-email: "Dr. Bradley T. Martin" <evobio721@gmail.com>
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pg_sui.egg-info/SOURCES.txt RENAMED
@@ -18,6 +18,7 @@ pyproject.toml
18
18
  .vscode/settings.json
19
19
  conda/recipe/bld.bat
20
20
  conda/recipe/build.sh
21
+ conda/recipe/conda_build_config.yaml
21
22
  conda/recipe/meta.yaml
22
23
  configs/config.yaml
23
24
  docs/build/Makefile
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/_version.py RENAMED
@@ -28,7 +28,7 @@ version_tuple: VERSION_TUPLE
28
28
  commit_id: COMMIT_ID
29
29
  __commit_id__: COMMIT_ID
30
30
 
31
- __version__ = version = '1.6.14.dev5'
32
- __version_tuple__ = version_tuple = (1, 6, 14, 'dev5')
31
+ __version__ = version = '1.6.14.dev6'
32
+ __version_tuple__ = version_tuple = (1, 6, 14, 'dev6')
33
33
 
34
- __commit_id__ = commit_id = 'gaaed7e51c'
34
+ __commit_id__ = commit_id = 'g516675b72'
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/.dockerignore RENAMED
File without changes
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/.gitignore RENAMED
File without changes
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/Dockerfile RENAMED
File without changes
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/LICENSE RENAMED
File without changes
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/MANIFEST.in RENAMED
File without changes
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/README.md RENAMED
File without changes
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/changelog.md RENAMED
File without changes
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/pgsui/cli.py RENAMED
File without changes
{pg_sui-1.6.14.dev5 → pg_sui-1.6.14.dev6}/setup.cfg RENAMED
File without changes