pg-sui 1.6.14.dev0__tar.gz → 1.6.14.dev4__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/.github/workflows/conda.yaml +2 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/.github/workflows/docker.yaml +9 -6
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/PKG-INFO +1 -1
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/conda/recipe/meta.yaml +2 -1
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pg_sui.egg-info/PKG-INFO +1 -1
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/_version.py +3 -3
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/.dockerignore +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/.gitattributes +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/.github/workflows/release.yaml +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/.gitignore +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/.readthedocs.yaml +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/.vscode/launch.json +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/.vscode/settings.json +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/Dockerfile +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/LICENSE +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/MANIFEST.in +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/README.md +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/changelog.md +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/conda/recipe/bld.bat +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/conda/recipe/build.sh +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/configs/config.yaml +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/Makefile +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/_static/custom.css +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/_templates +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/about.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/changelog.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/conf.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/gui.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/implement_new_models.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/imputer_methods.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/index.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/install.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/make.bat +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/modules.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/non_ml_imputers.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/pgsui.data_processing.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/pgsui.impute.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/pgsui.impute.supervised.imputers.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/pgsui.impute.supervised.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/pgsui.impute.unsupervised.imputers.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/pgsui.impute.unsupervised.models.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/pgsui.impute.unsupervised.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/pgsui.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/pgsui.utils.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/supervised_imputers.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/tutorial.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/docs/build/unsupervised_imputers.rst +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/environment.yml +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/img/NLPCA_Model_Architecture.svg +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/img/VAE_Model_Architecture_rotated.svg +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/img/pgsui-logo-faded-thumb.png +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/img/pgsui-logo-faded.png +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/img/pgsui-logo-notfaded.png +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/multiqc_config.yaml +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/notebooks/run_pgsui_dev.ipynb +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/package-lock.json +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pg_sui.egg-info/SOURCES.txt +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pg_sui.egg-info/dependency_links.txt +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pg_sui.egg-info/entry_points.txt +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pg_sui.egg-info/requires.txt +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pg_sui.egg-info/top_level.txt +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/cli.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/data_processing/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/data_processing/config.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/data_processing/containers.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/data_processing/transformers.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/__main__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/extra-resources/.gitkeep +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/icons/icons/1024x1024.png +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/icons/icons/128x128.png +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/icons/icons/16x16.png +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/icons/icons/24x24.png +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/icons/icons/256x256.png +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/icons/icons/32x32.png +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/icons/icons/48x48.png +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/icons/icons/512x512.png +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/icons/icons/64x64.png +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/icons/icons/icon.icns +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/icons/icons/icon.ico +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/main.js +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/package-lock.json +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/package.json +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/preload.js +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/server.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/ui/logo.png +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/ui/renderer.js +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/ui/styles.css +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/app/ui/ui_shim.js +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/bootstrap.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/launch.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/electron/package.json +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/example_data/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/example_data/phylip_files/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/example_data/phylip_files/test.phy +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/example_data/popmaps/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/example_data/popmaps/phylogen_nomx.popmap +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/example_data/structure_files/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/example_data/structure_files/test.pops.2row.allsites.str +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/example_data/vcf_files/phylogen_subset14K.vcf.gz +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/example_data/vcf_files/phylogen_subset14K.vcf.gz.tbi +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/deterministic/imputers/allele_freq.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/deterministic/imputers/mode.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/deterministic/imputers/nmf.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/deterministic/imputers/phylo.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/deterministic/imputers/ref_allele.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/supervised/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/supervised/base.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/supervised/imputers/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/supervised/imputers/hist_gradient_boosting.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/supervised/imputers/random_forest.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/base.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/callbacks.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/imputers/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/imputers/autoencoder.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/imputers/nlpca.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/imputers/ubp.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/imputers/vae.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/loss_functions.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/models/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/models/autoencoder_model.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/models/nlpca_model.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/models/ubp_model.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/models/vae_model.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/nn_scorers.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/utils/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/utils/classification_viz.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/utils/logging_utils.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/utils/misc.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/utils/plotting.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/utils/pretty_metrics.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/utils/scorers.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pyproject.toml +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/scripts/build_gui_dists.zsh +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/scripts/download_training_data.zsh +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/scripts/pg_sui.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/scripts/run_iqtree.zsh +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/scripts/start_pgsui.sh +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/scripts/stop_pgsui.sh +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/scripts/summarize_input_metadata.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/scripts/vcf2phy.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/scripts/vcf2phy.zsh +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/setup.cfg +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/snpiosp/__init__.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/snpiosp/compare_dataset_stats.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/snpiosp/run_snpiosp.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/snpiosp/snpiosp.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/tests/conftest.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/tests/test_config.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/tests/test_deterministic_imputers.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/tests/test_imputers_unsupervised.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/tests/test_scorers.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/tests/test_transformers.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/workflow/envs/tree_sim.yml +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/workflow/profile/config.yaml +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/workflow/run_sim1.smk +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/workflow/scripts/sim_treeparams.py +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/workflow/sim1_config.yaml +0 -0
- {pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/workflow/t0.01_c0.1_a0.0_gtrgamma.phylip +0 -0
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- name: Upload conda artifacts
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contents: read
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50
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|
packages: write
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51
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+
env:
|
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52
|
+
DOCKERHUB_PASSWORD: ${{ secrets.DOCKERHUB_BTMARTIN721 }}
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|
53
|
+
DOCKERHUB_USERNAME_SECRET: ${{ secrets.DOCKERHUB_USERNAME }}
|
|
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|
steps:
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|
52
55
|
- name: Maximize disk space
|
|
53
56
|
run: |
|
|
@@ -112,8 +115,8 @@ jobs:
|
|
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112
115
|
id: dockerhub-creds
|
|
113
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|
if: github.event_name != 'pull_request'
|
|
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|
run: |
|
|
115
|
-
if [[ -n "${
|
|
116
|
-
echo "username=${
|
|
118
|
+
if [[ -n "${DOCKERHUB_USERNAME_SECRET}" ]]; then
|
|
119
|
+
echo "username=${DOCKERHUB_USERNAME_SECRET}" >> "$GITHUB_OUTPUT"
|
|
117
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|
elif [[ -n "${{ vars.DOCKERHUB_USERNAME }}" ]]; then
|
|
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|
echo "username=${{ vars.DOCKERHUB_USERNAME }}" >> "$GITHUB_OUTPUT"
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else
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|
@@ -153,14 +156,14 @@ jobs:
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type=sha,format=short
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157
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- name: Log in to Docker Hub
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|
156
|
-
if: github.event_name != 'pull_request' && steps.dockerhub-creds.outputs.username != '' &&
|
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159
|
+
if: github.event_name != 'pull_request' && steps.dockerhub-creds.outputs.username != '' && env.DOCKERHUB_PASSWORD != ''
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|
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|
uses: docker/login-action@v3
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|
with:
|
|
159
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|
username: ${{ steps.dockerhub-creds.outputs.username }}
|
|
160
|
-
password: ${{
|
|
163
|
+
password: ${{ env.DOCKERHUB_PASSWORD }}
|
|
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164
|
|
|
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|
- name: Warn about missing Docker Hub credentials
|
|
163
|
-
if: github.event_name != 'pull_request' && (steps.dockerhub-creds.outputs.username == '' ||
|
|
166
|
+
if: github.event_name != 'pull_request' && (steps.dockerhub-creds.outputs.username == '' || env.DOCKERHUB_PASSWORD == '')
|
|
164
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|
run: |
|
|
165
168
|
echo "Docker Hub credentials not provided; skipping login. Push will fail without credentials."
|
|
166
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|
|
|
@@ -171,7 +174,7 @@ jobs:
|
|
|
171
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|
file: Dockerfile
|
|
172
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|
# Build single-arch when loading for PRs; multi-arch only for tag pushes.
|
|
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|
platforms: ${{ github.event_name == 'pull_request' && 'linux/amd64' || 'linux/amd64,linux/arm64' }}
|
|
174
|
-
push: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') &&
|
|
177
|
+
push: ${{ github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v') && env.DOCKERHUB_PASSWORD != '' && steps.dockerhub-creds.outputs.username != '' }}
|
|
175
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|
load: ${{ github.event_name == 'pull_request' }}
|
|
176
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|
builder: ${{ steps.buildx.outputs.name }}
|
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|
tags: ${{ steps.meta.outputs.tags }}
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: pg-sui
|
|
3
|
-
Version: 1.6.14.
|
|
3
|
+
Version: 1.6.14.dev4
|
|
4
4
|
Summary: Python machine and deep learning API to impute missing genotypes
|
|
5
5
|
Author-email: "Drs. Bradley T. Martin and Tyler K. Chafin" <evobio721@gmail.com>
|
|
6
6
|
Maintainer-email: "Dr. Bradley T. Martin" <evobio721@gmail.com>
|
|
@@ -1,5 +1,6 @@
|
|
|
1
1
|
# meta.yaml — pg-sui conda recipe
|
|
2
|
-
|
|
2
|
+
# Normalize PKG_VERSION to conda-friendly format (convert hyphens to dots)
|
|
3
|
+
{% set version = environ.get("PKG_VERSION", "1.6.8").replace("-", ".") %}
|
|
3
4
|
|
|
4
5
|
package:
|
|
5
6
|
name: "pg-sui"
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: pg-sui
|
|
3
|
-
Version: 1.6.14.
|
|
3
|
+
Version: 1.6.14.dev4
|
|
4
4
|
Summary: Python machine and deep learning API to impute missing genotypes
|
|
5
5
|
Author-email: "Drs. Bradley T. Martin and Tyler K. Chafin" <evobio721@gmail.com>
|
|
6
6
|
Maintainer-email: "Dr. Bradley T. Martin" <evobio721@gmail.com>
|
|
@@ -28,7 +28,7 @@ version_tuple: VERSION_TUPLE
|
|
|
28
28
|
commit_id: COMMIT_ID
|
|
29
29
|
__commit_id__: COMMIT_ID
|
|
30
30
|
|
|
31
|
-
__version__ = version = '1.6.14.
|
|
32
|
-
__version_tuple__ = version_tuple = (1, 6, 14, '
|
|
31
|
+
__version__ = version = '1.6.14.dev4'
|
|
32
|
+
__version_tuple__ = version_tuple = (1, 6, 14, 'dev4')
|
|
33
33
|
|
|
34
|
-
__commit_id__ = commit_id = '
|
|
34
|
+
__commit_id__ = commit_id = 'g6066bf5ae'
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{pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/example_data/vcf_files/phylogen_subset14K.vcf.gz
RENAMED
|
File without changes
|
{pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/example_data/vcf_files/phylogen_subset14K.vcf.gz.tbi
RENAMED
|
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|
{pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/deterministic/imputers/allele_freq.py
RENAMED
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{pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/supervised/imputers/hist_gradient_boosting.py
RENAMED
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{pg_sui-1.6.14.dev0 → pg_sui-1.6.14.dev4}/pgsui/impute/unsupervised/models/autoencoder_model.py
RENAMED
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