petpal 0.5.4__tar.gz

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  1. petpal-0.5.4/.github/ISSUE_TEMPLATE/bug_report.md +34 -0
  2. petpal-0.5.4/.github/ISSUE_TEMPLATE/feature_request.md +25 -0
  3. petpal-0.5.4/.github/workflows/publish-to-pypi.yml +76 -0
  4. petpal-0.5.4/.github/workflows/python-package.yml +45 -0
  5. petpal-0.5.4/.gitignore +239 -0
  6. petpal-0.5.4/.readthedocs.yaml +25 -0
  7. petpal-0.5.4/LICENSE +674 -0
  8. petpal-0.5.4/PKG-INFO +73 -0
  9. petpal-0.5.4/README.md +37 -0
  10. petpal-0.5.4/data/tcm_tacs/1tcm/gaussian_noise/tac_1tcm_set-00.txt +401 -0
  11. petpal-0.5.4/data/tcm_tacs/1tcm/gaussian_noise/tac_1tcm_set-01.txt +401 -0
  12. petpal-0.5.4/data/tcm_tacs/1tcm/gaussian_noise/tac_1tcm_set-02.txt +401 -0
  13. petpal-0.5.4/data/tcm_tacs/1tcm/gaussian_noise/tacs.pdf +0 -0
  14. petpal-0.5.4/data/tcm_tacs/1tcm/gaussian_noise/tacs.png +0 -0
  15. petpal-0.5.4/data/tcm_tacs/1tcm/noise_free/tac_1tcm_set-00.txt +401 -0
  16. petpal-0.5.4/data/tcm_tacs/1tcm/noise_free/tac_1tcm_set-01.txt +401 -0
  17. petpal-0.5.4/data/tcm_tacs/1tcm/noise_free/tac_1tcm_set-02.txt +401 -0
  18. petpal-0.5.4/data/tcm_tacs/1tcm/noise_free/tacs.pdf +0 -0
  19. petpal-0.5.4/data/tcm_tacs/1tcm/noise_free/tacs.png +0 -0
  20. petpal-0.5.4/data/tcm_tacs/1tcm/params_1tcm_set-00.json +7 -0
  21. petpal-0.5.4/data/tcm_tacs/1tcm/params_1tcm_set-01.json +7 -0
  22. petpal-0.5.4/data/tcm_tacs/1tcm/params_1tcm_set-02.json +7 -0
  23. petpal-0.5.4/data/tcm_tacs/fdg_plasma_clamp_evenly_resampled.txt +401 -0
  24. petpal-0.5.4/data/tcm_tacs/fdg_plasma_clamp_evenly_resampled_woMax.txt +242 -0
  25. petpal-0.5.4/data/tcm_tacs/fdg_plasma_clamp_tacs.pdf +0 -0
  26. petpal-0.5.4/data/tcm_tacs/fdg_plasma_clamp_tacs.png +0 -0
  27. petpal-0.5.4/data/tcm_tacs/gen_tcms_data.ipynb +1087 -0
  28. petpal-0.5.4/data/tcm_tacs/readme.md +31 -0
  29. petpal-0.5.4/data/tcm_tacs/serial_2tcm/gaussian_noise/tac_2tcm_set-00.txt +401 -0
  30. petpal-0.5.4/data/tcm_tacs/serial_2tcm/gaussian_noise/tac_2tcm_set-01.txt +401 -0
  31. petpal-0.5.4/data/tcm_tacs/serial_2tcm/gaussian_noise/tac_2tcm_set-02.txt +401 -0
  32. petpal-0.5.4/data/tcm_tacs/serial_2tcm/gaussian_noise/tacs.pdf +0 -0
  33. petpal-0.5.4/data/tcm_tacs/serial_2tcm/gaussian_noise/tacs.png +0 -0
  34. petpal-0.5.4/data/tcm_tacs/serial_2tcm/noise_free/tac_2tcm_set-00.txt +401 -0
  35. petpal-0.5.4/data/tcm_tacs/serial_2tcm/noise_free/tac_2tcm_set-01.txt +401 -0
  36. petpal-0.5.4/data/tcm_tacs/serial_2tcm/noise_free/tac_2tcm_set-02.txt +401 -0
  37. petpal-0.5.4/data/tcm_tacs/serial_2tcm/noise_free/tacs.pdf +0 -0
  38. petpal-0.5.4/data/tcm_tacs/serial_2tcm/noise_free/tacs.png +0 -0
  39. petpal-0.5.4/data/tcm_tacs/serial_2tcm/params_serial_2tcm_set-00.json +9 -0
  40. petpal-0.5.4/data/tcm_tacs/serial_2tcm/params_serial_2tcm_set-01.json +9 -0
  41. petpal-0.5.4/data/tcm_tacs/serial_2tcm/params_serial_2tcm_set-02.json +9 -0
  42. petpal-0.5.4/data/tcm_tacs/serial_2tcm_k4zero/gaussian_noise/tac_2tcm_k4zero_set-00.txt +401 -0
  43. petpal-0.5.4/data/tcm_tacs/serial_2tcm_k4zero/gaussian_noise/tac_2tcm_k4zero_set-01.txt +401 -0
  44. petpal-0.5.4/data/tcm_tacs/serial_2tcm_k4zero/gaussian_noise/tacs.pdf +0 -0
  45. petpal-0.5.4/data/tcm_tacs/serial_2tcm_k4zero/gaussian_noise/tacs.png +0 -0
  46. petpal-0.5.4/data/tcm_tacs/serial_2tcm_k4zero/noise_free/tac_2tcm_k4zero_set-00.txt +401 -0
  47. petpal-0.5.4/data/tcm_tacs/serial_2tcm_k4zero/noise_free/tac_2tcm_k4zero_set-01.txt +401 -0
  48. petpal-0.5.4/data/tcm_tacs/serial_2tcm_k4zero/noise_free/tacs.pdf +0 -0
  49. petpal-0.5.4/data/tcm_tacs/serial_2tcm_k4zero/noise_free/tacs.png +0 -0
  50. petpal-0.5.4/data/tcm_tacs/serial_2tcm_k4zero/params_serial_2tcm_k4zero_set-00.json +8 -0
  51. petpal-0.5.4/data/tcm_tacs/serial_2tcm_k4zero/params_serial_2tcm_k4zero_set-01.json +8 -0
  52. petpal-0.5.4/data/tcm_tacs/turku_pet_center_fdg_plasma_clamp.txt +119 -0
  53. petpal-0.5.4/docs/Makefile +20 -0
  54. petpal-0.5.4/docs/PETPAL_Logo.png +0 -0
  55. petpal-0.5.4/docs/_templates/index.rst +14 -0
  56. petpal-0.5.4/docs/_templates/python/attribute.rst +1 -0
  57. petpal-0.5.4/docs/_templates/python/class.rst +104 -0
  58. petpal-0.5.4/docs/_templates/python/data.rst +45 -0
  59. petpal-0.5.4/docs/_templates/python/exception.rst +1 -0
  60. petpal-0.5.4/docs/_templates/python/function.rst +21 -0
  61. petpal-0.5.4/docs/_templates/python/method.rst +21 -0
  62. petpal-0.5.4/docs/_templates/python/module.rst +180 -0
  63. petpal-0.5.4/docs/_templates/python/package.rst +32 -0
  64. petpal-0.5.4/docs/_templates/python/property.rst +21 -0
  65. petpal-0.5.4/docs/conf.py +102 -0
  66. petpal-0.5.4/docs/index.rst +65 -0
  67. petpal-0.5.4/docs/make.bat +35 -0
  68. petpal-0.5.4/docs/requirements.txt +222 -0
  69. petpal-0.5.4/docs/tutorials/index.rst +7 -0
  70. petpal-0.5.4/docs/tutorials/pib_example.rst +213 -0
  71. petpal-0.5.4/petpal/__init__.py +14 -0
  72. petpal-0.5.4/petpal/cli/__init__.py +17 -0
  73. petpal-0.5.4/petpal/cli/cli_graphical_analysis.py +101 -0
  74. petpal-0.5.4/petpal/cli/cli_graphical_plots.py +63 -0
  75. petpal-0.5.4/petpal/cli/cli_idif.py +93 -0
  76. petpal-0.5.4/petpal/cli/cli_parametric_images.py +131 -0
  77. petpal-0.5.4/petpal/cli/cli_pib_processing.py +121 -0
  78. petpal-0.5.4/petpal/cli/cli_plot_tacs.py +141 -0
  79. petpal-0.5.4/petpal/cli/cli_preproc.py +433 -0
  80. petpal-0.5.4/petpal/cli/cli_pvc.py +83 -0
  81. petpal-0.5.4/petpal/cli/cli_reference_tissue_models.py +279 -0
  82. petpal-0.5.4/petpal/cli/cli_stats.py +40 -0
  83. petpal-0.5.4/petpal/cli/cli_tac_fitting.py +311 -0
  84. petpal-0.5.4/petpal/cli/cli_tac_interpolation.py +132 -0
  85. petpal-0.5.4/petpal/cli/cli_vat_processing.py +259 -0
  86. petpal-0.5.4/petpal/input_function/__init__.py +10 -0
  87. petpal-0.5.4/petpal/input_function/blood_input.py +212 -0
  88. petpal-0.5.4/petpal/input_function/idif_necktangle.py +162 -0
  89. petpal-0.5.4/petpal/input_function/pca_guided_idif.py +961 -0
  90. petpal-0.5.4/petpal/kinetic_modeling/__init__.py +18 -0
  91. petpal-0.5.4/petpal/kinetic_modeling/fit_tac_with_rtms.py +447 -0
  92. petpal-0.5.4/petpal/kinetic_modeling/graphical_analysis.py +1091 -0
  93. petpal-0.5.4/petpal/kinetic_modeling/parametric_images.py +976 -0
  94. petpal-0.5.4/petpal/kinetic_modeling/reference_tissue_models.py +967 -0
  95. petpal-0.5.4/petpal/kinetic_modeling/rtm_analysis.py +557 -0
  96. petpal-0.5.4/petpal/kinetic_modeling/tac_fitting.py +2109 -0
  97. petpal-0.5.4/petpal/kinetic_modeling/tac_interpolation.py +190 -0
  98. petpal-0.5.4/petpal/kinetic_modeling/tac_uncertainty.py +81 -0
  99. petpal-0.5.4/petpal/kinetic_modeling/tcms_as_convolutions.py +562 -0
  100. petpal-0.5.4/petpal/meta/__init__.py +8 -0
  101. petpal-0.5.4/petpal/meta/label_maps.py +651 -0
  102. petpal-0.5.4/petpal/pipelines/__init__.py +13 -0
  103. petpal-0.5.4/petpal/pipelines/kinetic_modeling_steps.py +742 -0
  104. petpal-0.5.4/petpal/pipelines/pca_guided_idif_steps.py +475 -0
  105. petpal-0.5.4/petpal/pipelines/pipelines.py +816 -0
  106. petpal-0.5.4/petpal/pipelines/preproc_steps.py +865 -0
  107. petpal-0.5.4/petpal/pipelines/steps_base.py +450 -0
  108. petpal-0.5.4/petpal/pipelines/steps_containers.py +756 -0
  109. petpal-0.5.4/petpal/preproc/__init__.py +16 -0
  110. petpal-0.5.4/petpal/preproc/decay_correction.py +149 -0
  111. petpal-0.5.4/petpal/preproc/image_operations_4d.py +864 -0
  112. petpal-0.5.4/petpal/preproc/motion_corr.py +662 -0
  113. petpal-0.5.4/petpal/preproc/partial_volume_corrections.py +154 -0
  114. petpal-0.5.4/petpal/preproc/regional_tac_extraction.py +425 -0
  115. petpal-0.5.4/petpal/preproc/register.py +315 -0
  116. petpal-0.5.4/petpal/preproc/segmentation_tools.py +573 -0
  117. petpal-0.5.4/petpal/preproc/symmetric_geometric_transfer_matrix.py +370 -0
  118. petpal-0.5.4/petpal/utils/__init__.py +20 -0
  119. petpal-0.5.4/petpal/utils/bids_utils.py +199 -0
  120. petpal-0.5.4/petpal/utils/constants.py +27 -0
  121. petpal-0.5.4/petpal/utils/data_driven_image_analyses.py +565 -0
  122. petpal-0.5.4/petpal/utils/decorators.py +109 -0
  123. petpal-0.5.4/petpal/utils/image_io.py +498 -0
  124. petpal-0.5.4/petpal/utils/math_lib.py +104 -0
  125. petpal-0.5.4/petpal/utils/metadata.py +126 -0
  126. petpal-0.5.4/petpal/utils/scan_timing.py +287 -0
  127. petpal-0.5.4/petpal/utils/stats.py +127 -0
  128. petpal-0.5.4/petpal/utils/testing_utils.py +215 -0
  129. petpal-0.5.4/petpal/utils/time_activity_curve.py +972 -0
  130. petpal-0.5.4/petpal/utils/useful_functions.py +433 -0
  131. petpal-0.5.4/petpal/visualizations/__init__.py +12 -0
  132. petpal-0.5.4/petpal/visualizations/graphical_plots.py +1017 -0
  133. petpal-0.5.4/petpal/visualizations/image_visualization.py +225 -0
  134. petpal-0.5.4/petpal/visualizations/qc_plots.py +33 -0
  135. petpal-0.5.4/petpal/visualizations/tac_plots.py +369 -0
  136. petpal-0.5.4/pyproject.toml +64 -0
  137. petpal-0.5.4/shared/dseg.tsv +116 -0
  138. petpal-0.5.4/shared/freesurfer_lmap.json +119 -0
  139. petpal-0.5.4/shared/freesurfer_lmap_lr.json +217 -0
  140. petpal-0.5.4/shared/perl_cyno_lmap.json +101 -0
  141. petpal-0.5.4/shared/perl_cyno_lmap_lr.json +198 -0
  142. petpal-0.5.4/test_notebooks/explicit_tac_fitting/01_fitting_TCMs.ipynb +1394 -0
  143. petpal-0.5.4/test_notebooks/testing_RTMs/01_testing_RTMs.ipynb +1623 -0
  144. petpal-0.5.4/test_notebooks/testing_graphical_analyses/01_testing_on_tcms_database.ipynb +1352 -0
  145. petpal-0.5.4/test_notebooks/testing_graphical_analyses/02_testing_parametric_images.ipynb +2113 -0
  146. petpal-0.5.4/test_notebooks/testing_graphical_analyses/03_plotting_graphical_anlayses_testbed.ipynb +893 -0
  147. petpal-0.5.4/tests/test_importpetpal.py +4 -0
@@ -0,0 +1,34 @@
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+ ---
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+ name: Bug report
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+ about: Create a report to help us improve
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+ title: "[BUG]"
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+ labels: bug
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+
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+ ---
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+
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+ **Describe the bug**
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+ A clear and concise description of what the bug is.
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+
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+ **To Reproduce**
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+ Steps to reproduce the behavior:
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+ 1. Go to '...'
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+ 2. Click on '....'
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+ 3. Scroll down to '....'
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+ 4. See error
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+
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+ **Expected behavior**
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+ A clear and concise description of what you expected to happen.
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+ **Screenshots**
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+ If applicable, add screenshots to help explain your problem.
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+
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+ **Environment (please complete the following information):**
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+ - OS [e.g. Linux, Windows 10]
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+ - Python version [e.g. 3.7]
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+ - Version [e.g. 0.1.1]
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+
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+ **Log**
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+ Paste any error messages or logs associated with the bug here.
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+ **Additional context**
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+ Add any other context about the problem here.
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+ ---
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+ name: Feature request
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+ about: Suggest an idea for this project
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+ title: "[REQUEST]"
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+ labels: enhancement
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+
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+ ---
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+
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+ **Type of Request**
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+ - [ ] Functionality
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+ - [ ] Documentation
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+ - [ ] Quality of Life
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+ - [ ] Other
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+ **Is your feature request related to a problem? How pervasive is the problem? Please describe.**
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+ A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
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+ A clear and concise description of any alternative solutions or features you've considered.
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+ **Additional context**
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+ Add any other context or screenshots about the feature request here. Any additional information about the device or system you would be using (e.g., RAM capacity, data set, and network bandwidth).
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+ name: Publish Python 🐍 distribution 📦 to PyPI and TestPyPI
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+
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+ on: push
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+
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+ jobs:
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+ build:
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+ name: Build distribution 📦
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+ runs-on: ubuntu-latest
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+
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+ steps:
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+ - uses: actions/checkout@v4
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+ with:
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+ persist-credentials: false
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+ - name: Set up Python
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+ uses: actions/setup-python@v5
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+ with:
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+ python-version: "3.x"
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+ - name: Install pypa/build
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+ run: >-
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+ python3 -m
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+ pip install
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+ build
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+ --user
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+ - name: Build a binary wheel and a source tarball
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+ run: python3 -m build
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+ - name: Store the distribution packages
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+ uses: actions/upload-artifact@v4
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+ with:
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+ name: python-package-distributions
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+ path: dist/
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+
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+ publish-to-pypi:
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+ name: >-
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+ Publish Python 🐍 distribution 📦 to PyPI
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+ if: startsWith(github.ref, 'refs/tags/') # only publish to PyPI on tag pushes
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+ needs:
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+ - build
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+ runs-on: ubuntu-latest
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+ environment:
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+ name: pypi
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+ url: https://pypi.org/p/petpal
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+ permissions:
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+ id-token: write # IMPORTANT: mandatory for trusted publishing
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+
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+ steps:
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+ - name: Download all the dists
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+ uses: actions/download-artifact@v4
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+ with:
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+ name: python-package-distributions
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+ path: dist/
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+ - name: Publish distribution 📦 to PyPI
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+ uses: pypa/gh-action-pypi-publish@release/v1
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+
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+ publish-to-testpypi:
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+ name: Publish Python 🐍 distribution 📦 to TestPyPI
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+ needs:
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+ - build
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+ runs-on: ubuntu-latest
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+
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+ environment:
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+ name: testpypi
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+ url: https://test.pypi.org/p/petpal
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+
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+ permissions:
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+ id-token: write # IMPORTANT: mandatory for trusted publishing
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+
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+ steps:
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+ - name: Download all the dists
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+ uses: actions/download-artifact@v4
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+ with:
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+ name: python-package-distributions
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+ path: dist/
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+ - name: Publish distribution 📦 to TestPyPI
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+ uses: pypa/gh-action-pypi-publish@release/v1
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+ with:
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+ repository-url: https://test.pypi.org/legacy/
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+ # This workflow will install Python dependencies, run tests and lint with a variety of Python versions
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+ # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
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+ # Workflow is activated whenever a branch is pushed or a pull request is initiated.
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+ # PETPAL: builds using the pyproject.toml, installs in a virtual environment, and runs all tests.
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+ # For developers: add any desired tests to "tests" folder following the "pytest" convention. Run pytest executable
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+ # prior to adding a new test to the software.
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+ # Tests include importing all packages to ensure no circular imports.
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+
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+ name: Python package
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+
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+ on:
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+ push:
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+ branches: [ "master" ]
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+ pull_request:
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+ branches: [ "master" ]
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+
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+ jobs:
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+ build:
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+
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+ runs-on: ubuntu-latest
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+ strategy:
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+ fail-fast: false
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+ matrix:
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+ python-version: ["3.12"]
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+
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+ steps:
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+ - uses: actions/checkout@v4
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+ - name: Set up Python ${{ matrix.python-version }}
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+ uses: actions/setup-python@v3
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+ with:
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+ python-version: ${{ matrix.python-version }}
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+ - name: Install dependencies
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+ run: |
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+ python -m pip install --upgrade pip
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+ python -m pip install flake8 pytest build
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+ python -m pip install .
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+ - name: Lint with flake8
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+ run: |
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+ # stop the build if there are Python syntax errors or undefined names
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+ flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
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+ # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
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+ flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
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+ - name: Test with pytest
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+ run: |
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+ pytest
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+ # Generated from JetBrains and Python .gitignore templates
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+
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+ # Byte-compiled / optimized / DLL files
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+ **/__pycache__/
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+ *.py[cod]
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+ *$py.class
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+
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+ # C extensions
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+ *.so
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+
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+ # Distribution / packaging
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+ .Python
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+ build/
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+ develop-eggs/
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+ dist/
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+ downloads/
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+ eggs/
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+ .eggs/
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+ lib/
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+ lib64/
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+ parts/
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+ sdist/
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+ var/
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+ wheels/
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+ share/python-wheels/
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+ **.egg-info/
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+ .installed.cfg
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+ *.egg
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+ MANIFEST
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+
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+ # PyInstaller
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+ # Usually these files are written by a python script from a template
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+ # before PyInstaller builds the exe, so as to inject date/other infos into it.
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+ *.manifest
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+ *.spec
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+
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+ # Installer logs
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+ pip-log.txt
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+ pip-delete-this-directory.txt
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+
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+ # Unit test / coverage reports
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+ htmlcov/
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+ .tox/
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+ .nox/
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+ .coverage
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+ .coverage.*
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+ .cache
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+ nosetests.xml
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+ coverage.xml
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+ *.cover
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+ *.py,cover
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+ .hypothesis/
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+ .pytest_cache/
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+ cover/
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+
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+ # Translations
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+ *.mo
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+ *.pot
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+
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+ # Django stuff:
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+ *.log
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+ local_settings.py
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+ db.sqlite3
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+ db.sqlite3-journal
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+
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+ # Flask stuff:
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+ instance/
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+ .webassets-cache
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+
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+ # Scrapy stuff:
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+ .scrapy
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+
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+ # Sphinx documentation
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+ docs/_build/
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+ docs/autoapi
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+
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+ # PyBuilder
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+ .pybuilder/
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+ target/
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+
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+ # Jupyter Notebook
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+ **/.ipynb_checkpoints
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+
84
+ # IPython
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+ profile_default/
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+ ipython_config.py
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+
88
+ # pyenv
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+ # For a library or package, you might want to ignore these files since the code is
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+ # intended to run in multiple environments; otherwise, check them in:
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+ # .python-version
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+
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+ # pipenv
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+ # According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
95
+ # However, in case of collaboration, if having platform-specific dependencies or dependencies
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+ # having no cross-platform support, pipenv may install dependencies that don't work, or not
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+ # install all needed dependencies.
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+ #Pipfile.lock
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+
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+ # poetry
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+ # Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
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+ # This is especially recommended for binary packages to ensure reproducibility, and is more
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+ # commonly ignored for libraries.
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+ # https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
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+ #poetry.lock
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+
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+ # pdm
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+ # Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
109
+ #pdm.lock
110
+ # pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
111
+ # in version control.
112
+ # https://pdm.fming.dev/latest/usage/project/#working-with-version-control
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+ .pdm.toml
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+ .pdm-python
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+ .pdm-build/
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+
117
+ # PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
118
+ __pypackages__/
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+
120
+ # Celery stuff
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+ celerybeat-schedule
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+ celerybeat.pid
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+
124
+ # SageMath parsed files
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+ *.sage.py
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+
127
+ # Environments
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+ .env
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+ .venv
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+ env/
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+ venv/
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+ ENV/
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+ env.bak/
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+ venv.bak/
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+
136
+ # Spyder project settings
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+ .spyderproject
138
+ .spyproject
139
+
140
+ # Rope project settings
141
+ .ropeproject
142
+
143
+ # mkdocs documentation
144
+ /site
145
+
146
+ # mypy
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+ .mypy_cache/
148
+ .dmypy.json
149
+ dmypy.json
150
+
151
+ # Pyre type checker
152
+ .pyre/
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+
154
+ # pytype static type analyzer
155
+ .pytype/
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+
157
+ # Cython debug symbols
158
+ cython_debug/
159
+
160
+ # Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider
161
+ # Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
162
+
163
+ # User-specific stuff
164
+ .idea/**/workspace.xml
165
+ .idea/**/tasks.xml
166
+ .idea/**/usage.statistics.xml
167
+ .idea/**/dictionaries
168
+ .idea/**/shelf
169
+
170
+ # AWS User-specific
171
+ .idea/**/aws.xml
172
+
173
+ # Generated files
174
+ .idea/**/contentModel.xml
175
+
176
+ # Sensitive or high-churn files
177
+ .idea/**/dataSources/
178
+ .idea/**/dataSources.ids
179
+ .idea/**/dataSources.local.xml
180
+ .idea/**/sqlDataSources.xml
181
+ .idea/**/dynamic.xml
182
+ .idea/**/uiDesigner.xml
183
+ .idea/**/dbnavigator.xml
184
+
185
+ # Gradle
186
+ .idea/**/gradle.xml
187
+ .idea/**/libraries
188
+
189
+ # Gradle and Maven with auto-import
190
+ # When using Gradle or Maven with auto-import, you should exclude module files,
191
+ # since they will be recreated, and may cause churn. Uncomment if using
192
+ # auto-import.
193
+ # .idea/artifacts
194
+ # .idea/compiler.xml
195
+ # .idea/jarRepositories.xml
196
+ # .idea/modules.xml
197
+ # .idea/*.iml
198
+ # .idea/modules
199
+ # *.iml
200
+ # *.ipr
201
+
202
+ # CMake
203
+ cmake-build-*/
204
+
205
+ # Mongo Explorer plugin
206
+ .idea/**/mongoSettings.xml
207
+
208
+ # File-based project format
209
+ *.iws
210
+
211
+ # IntelliJ
212
+ out/
213
+
214
+ # mpeltonen/sbt-idea plugin
215
+ .idea_modules/
216
+
217
+ # JIRA plugin
218
+ atlassian-ide-plugin.xml
219
+
220
+ # Cursive Clojure plugin
221
+ .idea/replstate.xml
222
+
223
+ # SonarLint plugin
224
+ .idea/sonarlint/
225
+
226
+ # Crashlytics plugin (for Android Studio and IntelliJ)
227
+ com_crashlytics_export_strings.xml
228
+ crashlytics.properties
229
+ crashlytics-build.properties
230
+ fabric.properties
231
+
232
+ # Editor-based Rest Client
233
+ .idea/httpRequests
234
+
235
+ # Android studio 3.1+ serialized cache file
236
+ .idea/caches/build_file_checksums.ser
237
+
238
+ # notebooks for testing new things
239
+ debug_notebooks
@@ -0,0 +1,25 @@
1
+ # Sample RTD config file from the RTD website
2
+ # Read the Docs configuration file
3
+ # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
4
+
5
+ # Required
6
+ version: 2
7
+
8
+ # Set the OS, Python version, and other tools you might need
9
+ build:
10
+ os: ubuntu-lts-latest
11
+ tools:
12
+ python: "3.12"
13
+
14
+ # Build documentation in the "docs/" directory with Sphinx
15
+ sphinx:
16
+ configuration: docs/conf.py
17
+
18
+ # Optionally, but recommended,
19
+ # declare the Python requirements required to build your documentation
20
+ # See https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html
21
+ python:
22
+ install:
23
+ - requirements: docs/requirements.txt
24
+ - method: pip
25
+ path: .