PyPI - peppy-sage - Versions diffs - 0.1.15__tar.gz - Mend

peppy-sage 0.1.15__tar.gz

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peppy_sage-0.1.15/Cargo.lock +3615 -0
peppy_sage-0.1.15/Cargo.toml +2 -0
peppy_sage-0.1.15/PKG-INFO +10 -0
peppy_sage-0.1.15/peppy_sage/Cargo.toml +25 -0
peppy_sage-0.1.15/peppy_sage/python/peppy_sage/__init__.py +55 -0
peppy_sage-0.1.15/peppy_sage/python/peppy_sage/core.py +234 -0
peppy_sage-0.1.15/peppy_sage/python/peppy_sage/indexing.py +177 -0
peppy_sage-0.1.15/peppy_sage/python/peppy_sage/scoring.py +60 -0
peppy_sage-0.1.15/peppy_sage/src/index_logic.rs +759 -0
peppy_sage-0.1.15/peppy_sage/src/lib.rs +1466 -0
peppy_sage-0.1.15/peppy_sage/src/scoring_logic.rs +56 -0
peppy_sage-0.1.15/peppy_sage/tests/python_library_test_search.py +145 -0
peppy_sage-0.1.15/peppy_sage/tests/python_test_search.py +132 -0
peppy_sage-0.1.15/peppy_sage/tests/test_search.py +138 -0
peppy_sage-0.1.15/peppy_sage/tests/trimmed_lib.tsv +28 -0
peppy_sage-0.1.15/pyproject.toml +24 -0
peppy_sage-0.1.15/python/peppy_sage/__init__.py +55 -0
peppy_sage-0.1.15/python/peppy_sage/core.py +234 -0
peppy_sage-0.1.15/python/peppy_sage/indexing.py +177 -0
peppy_sage-0.1.15/python/peppy_sage/scoring.py +60 -0
peppy_sage-0.1.15/sage_core/Cargo.toml +23 -0
peppy_sage-0.1.15/sage_core/src/database.rs +695 -0
peppy_sage-0.1.15/sage_core/src/enzyme.rs +819 -0
peppy_sage-0.1.15/sage_core/src/fasta.rs +90 -0
peppy_sage-0.1.15/sage_core/src/fdr.rs +242 -0
peppy_sage-0.1.15/sage_core/src/heap.rs +101 -0
peppy_sage-0.1.15/sage_core/src/ion_series.rs +329 -0
peppy_sage-0.1.15/sage_core/src/isotopes.rs +66 -0
peppy_sage-0.1.15/sage_core/src/lfq.rs +699 -0
peppy_sage-0.1.15/sage_core/src/lib.rs +15 -0
peppy_sage-0.1.15/sage_core/src/mass.rs +158 -0
peppy_sage-0.1.15/sage_core/src/ml/gauss.rs +165 -0
peppy_sage-0.1.15/sage_core/src/ml/kde.rs +169 -0
peppy_sage-0.1.15/sage_core/src/ml/linear_discriminant.rs +284 -0
peppy_sage-0.1.15/sage_core/src/ml/matrix.rs +460 -0
peppy_sage-0.1.15/sage_core/src/ml/mobility_model.rs +295 -0
peppy_sage-0.1.15/sage_core/src/ml/mod.rs +31 -0
peppy_sage-0.1.15/sage_core/src/ml/qvalue.rs +36 -0
peppy_sage-0.1.15/sage_core/src/ml/retention_alignment.rs +173 -0
peppy_sage-0.1.15/sage_core/src/ml/retention_model.rs +118 -0
peppy_sage-0.1.15/sage_core/src/modification.rs +180 -0
peppy_sage-0.1.15/sage_core/src/peptide.rs +721 -0
peppy_sage-0.1.15/sage_core/src/scoring.rs +913 -0
peppy_sage-0.1.15/sage_core/src/spectrum.rs +591 -0
peppy_sage-0.1.15/sage_core/src/tmt.rs +344 -0
peppy_sage-0.1.15/sage_core/tests/integration.rs +70 -0

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