peppier 2026.41.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (43) hide show
  1. peppier-2026.41.1/.biobuddies/autoformat-excludes +19 -0
  2. peppier-2026.41.1/.biobuddies/basedpyright.toml +3 -0
  3. peppier-2026.41.1/.biobuddies/ruff.toml +65 -0
  4. peppier-2026.41.1/.biobuddies/typos.toml +19 -0
  5. peppier-2026.41.1/.claude/hooks/session-start.sh +7 -0
  6. peppier-2026.41.1/.claude/settings.json +19 -0
  7. peppier-2026.41.1/.codex/setup.sh +3 -0
  8. peppier-2026.41.1/.config/mise.lock +165 -0
  9. peppier-2026.41.1/.config/mise.toml +590 -0
  10. peppier-2026.41.1/.config/setup.bash +48 -0
  11. peppier-2026.41.1/.cookiecutter.yaml +8 -0
  12. peppier-2026.41.1/.editorconfig +12 -0
  13. peppier-2026.41.1/.github/actionlint.yaml +4 -0
  14. peppier-2026.41.1/.github/copilot-instructions.md +152 -0
  15. peppier-2026.41.1/.github/pull_request_template.md +3 -0
  16. peppier-2026.41.1/.github/workflows/act.yaml +97 -0
  17. peppier-2026.41.1/.gitignore +373 -0
  18. peppier-2026.41.1/.prettierrc.toml +16 -0
  19. peppier-2026.41.1/.yamllint.yaml +12 -0
  20. peppier-2026.41.1/AGENTS.md +152 -0
  21. peppier-2026.41.1/CLAUDE.md +152 -0
  22. peppier-2026.41.1/CONTRIBUTING.md +152 -0
  23. peppier-2026.41.1/MANIFEST.in +1 -0
  24. peppier-2026.41.1/PKG-INFO +33 -0
  25. peppier-2026.41.1/README.md +2 -0
  26. peppier-2026.41.1/package-lock.json +90 -0
  27. peppier-2026.41.1/package.json +9 -0
  28. peppier-2026.41.1/peppier.egg-info/PKG-INFO +33 -0
  29. peppier-2026.41.1/peppier.egg-info/SOURCES.txt +41 -0
  30. peppier-2026.41.1/peppier.egg-info/dependency_links.txt +1 -0
  31. peppier-2026.41.1/peppier.egg-info/requires.txt +26 -0
  32. peppier-2026.41.1/peppier.egg-info/scm_file_list.json +38 -0
  33. peppier-2026.41.1/peppier.egg-info/scm_version.json +8 -0
  34. peppier-2026.41.1/peppier.egg-info/top_level.txt +1 -0
  35. peppier-2026.41.1/peppier.py +30 -0
  36. peppier-2026.41.1/pypi_compatible_build.py +32 -0
  37. peppier-2026.41.1/pyproject.toml +80 -0
  38. peppier-2026.41.1/requirements.txt +137 -0
  39. peppier-2026.41.1/setup.cfg +4 -0
  40. peppier-2026.41.1/test_boilerplate.py +8 -0
  41. peppier-2026.41.1/test_peppier.py +126 -0
  42. peppier-2026.41.1/tests/docker.tf +24 -0
  43. peppier-2026.41.1/tests/fretboard.html +13 -0
peppier-2026.41.1/.biobuddies/autoformat-excludes ADDED
@@ -0,0 +1,19 @@
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+ # AUTOGENERATED from https://github.com/biobuddies/measles
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+ # Extend from .config/autoformat-excludes
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+
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+ # Cookiecutter outputs
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+ ^\.biobuddies$
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+ ^\.biobuddies/
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+ ^\.editorconfig$
8
+ ^\.github/copilot-instructions\.md$
9
+ ^\.github/pull_request_template\.md$
10
+ ^\.gitignore$
11
+ ^\.prettierrc\.toml$
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+ ^mise\.toml$
13
+ ^package-lock\.json$
14
+ ^package\.json$
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+ ^pyproject\.toml$
16
+ ^requirements\.txt$
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+ ^\.shellcheckrc$
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+ ^\.yamllint\.yaml$
19
+ ^\{\{cookiecutter\.dot\}\}/
peppier-2026.41.1/.biobuddies/basedpyright.toml ADDED
@@ -0,0 +1,3 @@
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+ [tool.basedpyright]
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+ failOnWarnings = false
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+ reportUnusedCallResult = false # _ = function() is silly
peppier-2026.41.1/.biobuddies/ruff.toml ADDED
@@ -0,0 +1,65 @@
1
+ line-length = 100
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+ target-version = 'py312'
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+
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+ [format]
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+ docstring-code-format = true
6
+ preview = true
7
+ quote-style = 'single'
8
+ skip-magic-trailing-comma = true
9
+
10
+ [lint]
11
+ external = ['typos']
12
+ fixable = ['ALL']
13
+ ignore = [
14
+ 'ANN401', # `**kwargs: Any` is reasonable
15
+ 'BLE001', # except Exception is okay
16
+ 'COM812', # Insists on `join([],)` over `join([])`
17
+ 'CPY001', # Git records authors and dates
18
+ 'D101',
19
+ 'D103',
20
+ 'D104',
21
+ 'D107',
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+ 'EM101', # Simple code is more important than simple tracebacks
23
+ 'EM102', # Simple code is more important than simple tracebacks
24
+ 'FBT001', # What is bad about Boolean parameters?
25
+ 'FIX002', # Don't make the perfect the enemy of the good
26
+ 'INP001',
27
+ # Demystify magic values with good variable names, comments, or other context. Follow
28
+ # Rule Of Three for when to abstract.
29
+ 'PLR2004',
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+ 'Q000', # ruff format will single quote
31
+ 'Q001', # ruff format will single quote
32
+ 'Q003', # ruff format will single quote
33
+ # N806 tries to lowercase classes; currently ignored on a line-by-line basis
34
+ 'S607', # Using $PATH is pretty necessary for nvmrc, pyenv, venv, tfenv
35
+ 'SLF001', # Private member access is probably a last resort
36
+ 'TD002', # The git log records who wrote a TODO line
37
+ 'TD003', # Don't require issue links
38
+ 'TD004', # A colon takes up space without really improving readability
39
+ 'TRY002', # Forces premature specialization; the right time to subclass is when the exception starts being caught
40
+ 'TRY003', # Forces premature specialization; the right time to subclass is when the exception starts being caught
41
+ 'UP031', # Percent formatting can simplify curly-heavy strings
42
+ ]
43
+ select = ['ALL']
44
+
45
+ [lint.flake8-pytest-style]
46
+ parametrize-values-row-type = 'tuple'
47
+ parametrize-values-type = 'tuple'
48
+
49
+ [lint.isort]
50
+ split-on-trailing-comma = false
51
+
52
+ [lint.per-file-ignores]
53
+ '**/{conftest,test*}.py' = [
54
+ 'ANN201', # -> None doesn't improve pytest functions
55
+ 'N802', # Test functions can match class names
56
+ 'PLR2004', # Tests can have magic values
57
+ 'PLR6301', # Test classes can ignore self
58
+ 'PT013', # `import pytest` would be inconsistent with other imports
59
+ 'S101', # Tests can have assertions
60
+ 'S105', # Testing authentication is good
61
+ 'S603', # Tests can call subprocesses
62
+ ]
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+
64
+ [lint.pydocstyle]
65
+ convention = 'pep257'
peppier-2026.41.1/.biobuddies/typos.toml ADDED
@@ -0,0 +1,19 @@
1
+ [default]
2
+ locale = 'en-us'
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+ extend-ignore-re = ['(?Rm)^.*(#|//) *noqa(: *typos)?$']
4
+
5
+ [default.extend-identifiers]
6
+ 'CPY001' = 'CPY001'
7
+ 'IDentifier' = 'IDentifier' # Capitalization explaining UUID
8
+ 'iTerm2' = 'iTerm2'
9
+
10
+ [default.extend-words]
11
+ 'yml' = 'yaml' # http://www.yaml.org/faq.html
12
+ 'µ' = 'μ' # 0xb5 micro sign to 0x3bc Greek small mu
13
+ 'adoptors' = 'adoptors'
14
+
15
+ [files]
16
+ extend-exclude = ['node_modules/**']
17
+ ignore-global = true
18
+ ignore-parent = true
19
+ ignore-vcs = true
peppier-2026.41.1/.claude/hooks/session-start.sh ADDED
@@ -0,0 +1,7 @@
1
+ #!/bin/bash
2
+ # Single repository sessions run this automatically. Multi repository sessions start in the
3
+ # parent directory, finding no .claude, so their environment setup script must run setup.bash.
4
+ set -o errexit -o nounset -o pipefail
5
+ # Laptops already have mise and its tools installed.
6
+ [ "${CLAUDE_CODE_REMOTE:-}" = true ] || exit 0
7
+ exec "$CLAUDE_PROJECT_DIR/.config/setup.bash"
peppier-2026.41.1/.claude/settings.json ADDED
@@ -0,0 +1,19 @@
1
+ {
2
+ "attribution": {
3
+ "commit": "",
4
+ "pr": "",
5
+ "sessionUrl": false
6
+ },
7
+ "hooks": {
8
+ "SessionStart": [
9
+ {
10
+ "hooks": [
11
+ {
12
+ "type": "command",
13
+ "command": "$CLAUDE_PROJECT_DIR/.claude/hooks/session-start.sh"
14
+ }
15
+ ]
16
+ }
17
+ ]
18
+ }
19
+ }
peppier-2026.41.1/.codex/setup.sh ADDED
@@ -0,0 +1,3 @@
1
+ #!/bin/bash
2
+ set -o errexit -o nounset -o pipefail
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+ exec "$(dirname "$0")/../.config/setup.bash"
peppier-2026.41.1/.config/mise.lock ADDED
@@ -0,0 +1,165 @@
1
+ # @generated - this file is auto-generated by `mise lock` https://mise.jdx.dev/dev-tools/mise-lock.html
2
+
3
+ lockfile_version = 2
4
+
5
+ [[tools."github:github/gh-stack"]]
6
+ version = "0.2.0"
7
+ backend = "github:github/gh-stack"
8
+ specifiers = ["0.2.0"]
9
+
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+ [tools."github:github/gh-stack"."platforms.linux-arm64"]
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+ checksum = "sha256:d29684746f337a580667605b34877e5624792bcc390e61473a050bd4839557bf"
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+ url = "https://github.com/github/gh-stack/releases/download/v0.2.0/linux-arm64"
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+ url_api = "https://api.github.com/repos/github/gh-stack/releases/assets/606428372"
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+ provenance = "github-attestations"
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+
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+ [tools."github:github/gh-stack"."platforms.linux-arm64-musl"]
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+ checksum = "sha256:d29684746f337a580667605b34877e5624792bcc390e61473a050bd4839557bf"
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+ url = "https://github.com/github/gh-stack/releases/download/v0.2.0/linux-arm64"
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+ url_api = "https://api.github.com/repos/github/gh-stack/releases/assets/606428372"
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+ provenance = "github-attestations"
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+
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+ [tools."github:github/gh-stack"."platforms.linux-x64"]
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+ checksum = "sha256:577065033b49d4505730ea0ad43ab1b0374b0d9b1308e9765647a6aa8eba3cb7"
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+ url = "https://github.com/github/gh-stack/releases/download/v0.2.0/linux-amd64"
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+ url_api = "https://api.github.com/repos/github/gh-stack/releases/assets/606428373"
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+ provenance = "github-attestations"
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+
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+ [tools."github:github/gh-stack"."platforms.linux-x64-musl"]
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+ checksum = "sha256:577065033b49d4505730ea0ad43ab1b0374b0d9b1308e9765647a6aa8eba3cb7"
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+ url = "https://github.com/github/gh-stack/releases/download/v0.2.0/linux-amd64"
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+ url_api = "https://api.github.com/repos/github/gh-stack/releases/assets/606428373"
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+ provenance = "github-attestations"
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+
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+ [tools."github:github/gh-stack"."platforms.macos-arm64"]
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+ checksum = "sha256:d8033f653f2b98d08e36e423f79d4f243653186b9c1cbe8310397dba5d6ac71e"
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+ url = "https://github.com/github/gh-stack/releases/download/v0.2.0/darwin-arm64"
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+ url_api = "https://api.github.com/repos/github/gh-stack/releases/assets/606428322"
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+ provenance = "github-attestations"
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+
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+ [tools."github:github/gh-stack"."platforms.macos-x64"]
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+ checksum = "sha256:22ddb2887934316b610e4d16a0c81cdd39e659aad29a0e0fd14e6f7d0f80317a"
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+ url = "https://github.com/github/gh-stack/releases/download/v0.2.0/darwin-amd64"
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+ url_api = "https://api.github.com/repos/github/gh-stack/releases/assets/606428320"
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+ provenance = "github-attestations"
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+
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+ [tools."github:github/gh-stack"."platforms.windows-x64"]
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+ checksum = "sha256:866f6a8b8cce340ec82f5d9c3e526d8434fecf60a36d274cb126701038147d8a"
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+ url = "https://github.com/github/gh-stack/releases/download/v0.2.0/windows-amd64.exe"
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+ url_api = "https://api.github.com/repos/github/gh-stack/releases/assets/606428408"
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+ provenance = "github-attestations"
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+
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+ [[tools.lychee]]
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+ version = "0.23.0"
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+ backend = "aqua:lycheeverse/lychee"
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+ specifiers = ["0.23.0"]
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+
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+ [tools.lychee."platforms.linux-arm64"]
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+ checksum = "sha256:97eb93b02a7d78a752fc33e5b0983439ccaadbf3db952b68a0a4401acd92e6e0"
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+ url = "https://github.com/lycheeverse/lychee/releases/download/lychee-v0.23.0/lychee-aarch64-unknown-linux-gnu.tar.gz"
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+ url_api = "https://api.github.com/repos/lycheeverse/lychee/releases/assets/355422488"
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+
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+ [tools.lychee."platforms.linux-arm64-musl"]
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+ checksum = "sha256:97eb93b02a7d78a752fc33e5b0983439ccaadbf3db952b68a0a4401acd92e6e0"
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+ url = "https://github.com/lycheeverse/lychee/releases/download/lychee-v0.23.0/lychee-aarch64-unknown-linux-gnu.tar.gz"
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+ url_api = "https://api.github.com/repos/lycheeverse/lychee/releases/assets/355422488"
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+
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+ [tools.lychee."platforms.linux-x64"]
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+ checksum = "sha256:1fcb6ccf10d04c22b8c5873c5b9cb7be32ee7423e12169d6f1a79a6f1962ef81"
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+ url = "https://github.com/lycheeverse/lychee/releases/download/lychee-v0.23.0/lychee-x86_64-unknown-linux-gnu.tar.gz"
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+ url_api = "https://api.github.com/repos/lycheeverse/lychee/releases/assets/355422074"
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+
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+ [tools.lychee."platforms.linux-x64-musl"]
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+ checksum = "sha256:5538440d2c69a45a0a09983271e5dee0c2fe7137d8035d25b2632e10a66a090a"
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+ url = "https://github.com/lycheeverse/lychee/releases/download/lychee-v0.23.0/lychee-x86_64-unknown-linux-musl.tar.gz"
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+ url_api = "https://api.github.com/repos/lycheeverse/lychee/releases/assets/355422587"
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+
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+ [tools.lychee."platforms.macos-arm64"]
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+ checksum = "sha256:1953bb425486e1b887757201e54e8fdf866c9cada6c270d8f6ed21ffbed4145a"
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+ url = "https://github.com/lycheeverse/lychee/releases/download/lychee-v0.23.0/lychee-arm64-macos.tar.gz"
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+ url_api = "https://api.github.com/repos/lycheeverse/lychee/releases/assets/355419865"
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+
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+ [tools.lychee."platforms.windows-x64"]
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+ checksum = "sha256:0fda7ff0a60c0250939fc25361c2d4e6e7853c31c996733fdd5a1dd760bcb824"
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+ url = "https://github.com/lycheeverse/lychee/releases/download/lychee-v0.23.0/lychee-x86_64-windows.exe"
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+ url_api = "https://api.github.com/repos/lycheeverse/lychee/releases/assets/355423012"
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+
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+ [[tools.node]]
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+ version = "24.21.0"
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+ backend = "core:node"
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+ specifiers = ["24"]
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+
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+ [tools.node."platforms.linux-arm64"]
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+ checksum = "sha256:724282c3b43aec998aa9527380465b45d229e021b58035f5f4f63095eabfe5d5"
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+ url = "https://nodejs.org/dist/v24.21.0/node-v24.21.0-linux-arm64.tar.gz"
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+
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+ [tools.node."platforms.linux-arm64-musl"]
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+ checksum = "sha256:3048b0811e158ca0d8672b59c839861763e144492980d8d29b369dfee45747e4"
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+ url = "https://unofficial-builds.nodejs.org/download/release/v24.21.0/node-v24.21.0-linux-arm64-musl.tar.gz"
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+
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+ [tools.node."platforms.linux-x64"]
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+ checksum = "sha256:6e1db87ef58b8819e5d5402eff1536491b18edd8eb7bee5ef7897876e88dc5ff"
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+ url = "https://nodejs.org/dist/v24.21.0/node-v24.21.0-linux-x64.tar.gz"
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+
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+ [tools.node."platforms.linux-x64-musl"]
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+ checksum = "sha256:01a713e34da98e7b4d2a3191ee7ca3f93dd0384d1a2ef23c379b2161ee6e133a"
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+ url = "https://unofficial-builds.nodejs.org/download/release/v24.21.0/node-v24.21.0-linux-x64-musl.tar.gz"
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+
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+ [tools.node."platforms.macos-arm64"]
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+ checksum = "sha256:bed7eea5325e1108f32ce5228ddd6a5f0f08a499ee42aa7442aea583702f6057"
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+ url = "https://nodejs.org/dist/v24.21.0/node-v24.21.0-darwin-arm64.tar.gz"
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+
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+ [tools.node."platforms.macos-x64"]
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+ checksum = "sha256:1462cb3b3046b815cf8ea436d3da450ec1a9f11dac7e5a46b0ada5305d7e8097"
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+ url = "https://nodejs.org/dist/v24.21.0/node-v24.21.0-darwin-x64.tar.gz"
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+
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+ [tools.node."platforms.windows-x64"]
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+ url = "https://nodejs.org/dist/v24.21.0/node-v24.21.0-win-x64.zip"
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+
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+ [[tools.uv]]
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+ version = "0.12.5"
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+ backend = "aqua:astral-sh/uv"
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+ specifiers = ["0.12.5"]
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+
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+ provenance = "github-attestations"
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+ provenance = "github-attestations"
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+ provenance = "github-attestations"
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+ provenance = "github-attestations"
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+ provenance = "github-attestations"
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+ provenance = "github-attestations"
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+ url = "https://github.com/astral-sh/uv/releases/download/0.12.5/uv-x86_64-pc-windows-msvc.zip"
164
+ url_api = "https://api.github.com/repos/astral-sh/uv/releases/assets/514851084"
165
+ provenance = "github-attestations"