pelican-nlp 0.2.3__tar.gz → 0.2.5__tar.gz

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Files changed (102) hide show
  1. {pelican_nlp-0.2.3/pelican_nlp.egg-info → pelican_nlp-0.2.5}/PKG-INFO +1 -1
  2. pelican_nlp-0.2.5/pelican_nlp/_version.py +1 -0
  3. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/configuration_files/config_audio.yml +0 -1
  4. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/configuration_files/config_discourse.yml +0 -1
  5. {pelican_nlp-0.2.3/pelican_nlp/sample_configuration_files → pelican_nlp-0.2.5/pelican_nlp/configuration_files}/config_fluency.yml +0 -1
  6. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/configuration_files/config_general.yml +0 -1
  7. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/configuration_files/config_morteza.yml +0 -2
  8. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/core/corpus.py +1 -1
  9. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/main.py +1 -1
  10. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/sample_configuration_files/config_discourse.yml +0 -1
  11. {pelican_nlp-0.2.3/pelican_nlp/configuration_files → pelican_nlp-0.2.5/pelican_nlp/sample_configuration_files}/config_fluency.yml +0 -1
  12. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/sample_configuration_files/config_general.yml +0 -1
  13. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5/pelican_nlp.egg-info}/PKG-INFO +1 -1
  14. pelican_nlp-0.2.3/pelican_nlp/_version.py +0 -1
  15. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/LICENSE +0 -0
  16. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/MANIFEST.in +0 -0
  17. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/README.rst +0 -0
  18. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_discourse/config_discourse.yml +0 -0
  19. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_discourse/subjects/sub-01/interview/sub-01_interview_schizophrenia_run-01.rtf +0 -0
  20. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_fluency/config_fluency.yml +0 -0
  21. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_fluency/subjects/sub-01/fluency/sub-01_fluency_sem_animals.txt +0 -0
  22. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_fluency/subjects/sub-01/fluency/sub-01_fluency_sem_clothes.txt +0 -0
  23. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_fluency/subjects/sub-01/fluency/sub-01_fluency_sem_food.txt +0 -0
  24. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_fluency/subjects/sub-02/fluency/sub-02_fluency_sem_animals.txt +0 -0
  25. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_fluency/subjects/sub-02/fluency/sub-02_fluency_sem_clothes.txt +0 -0
  26. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_fluency/subjects/sub-02/fluency/sub-02_fluency_sem_food.txt +0 -0
  27. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_image-descriptions/config_image-descriptions.yml +0 -0
  28. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_image-descriptions/subjects/sub-01/ses-01/image-description/sub-01_ses-01_image-description_drug.docx +0 -0
  29. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_image-descriptions/subjects/sub-01/ses-01/image-description/sub-01_ses-01_image-description_placebo.docx +0 -0
  30. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_image-descriptions/subjects/sub-01/ses-02/image-description/sub-01_ses-02_image-description_drug.docx +0 -0
  31. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_image-descriptions/subjects/sub-01/ses-02/image-description/sub-01_ses-02_image-description_placebo.docx +0 -0
  32. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_image-descriptions/subjects/sub-02/ses-01/image-description/sub-02_ses-01_image-description_drug.docx +0 -0
  33. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/examples/PyPI_testing_image-descriptions/subjects/sub-02/ses-01/image-description/sub-02_ses-01_image-description_placebo.docx +0 -0
  34. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/__init__.py +0 -0
  35. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/extract_acoustic_features.py +0 -0
  36. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/fluency/__init__.py +0 -0
  37. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/fluency/aggregate_fluency_results.py +0 -0
  38. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/fluency/behavioral_data.py +0 -0
  39. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/fluency/check_duplicates.py +0 -0
  40. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/fluency/coherence.py +0 -0
  41. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/fluency/config.py +0 -0
  42. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/fluency/main.py +0 -0
  43. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/fluency/optimality_without_tsa.py +0 -0
  44. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/fluency/plot_fluency.py +0 -0
  45. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/fluency/plotting_utils.py +0 -0
  46. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/fluency/questionnaires_data.py +0 -0
  47. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/fluency/stats_fluency.py +0 -0
  48. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/fluency/utils.py +0 -0
  49. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/speaker_diarization_Nils.py +0 -0
  50. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/transcription/__init__.py +0 -0
  51. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/transcription/annotation_tool.py +0 -0
  52. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/transcription/annotation_tool_boundaries.py +0 -0
  53. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/transcription/annotation_tool_sandbox.py +0 -0
  54. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/transcription/output/holmes_control_nova_all_outputs.json +0 -0
  55. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/transcription/test.json +0 -0
  56. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/transcription/transcribe_audio.py +0 -0
  57. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/transcription/transcribe_audio_chunked.py +0 -0
  58. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/transcription/transcription.py +0 -0
  59. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/transcription/transcription_gui.py +0 -0
  60. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Nils_backup/transcription/word_boundaries.py +0 -0
  61. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Silvia_files/Opensmile/opensmile_feature_extraction.py +0 -0
  62. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/Silvia_files/prosogram/prosogram.py +0 -0
  63. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/__init__.py +0 -0
  64. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/cli.py +0 -0
  65. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/core/__init__.py +0 -0
  66. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/core/audio_document.py +0 -0
  67. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/core/document.py +0 -0
  68. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/core/subject.py +0 -0
  69. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/extraction/__init__.py +0 -0
  70. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/extraction/acoustic_feature_extraction.py +0 -0
  71. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/extraction/distance_from_randomness.py +0 -0
  72. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/extraction/extract_embeddings.py +0 -0
  73. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/extraction/extract_logits.py +0 -0
  74. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/extraction/language_model.py +0 -0
  75. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/extraction/semantic_similarity.py +0 -0
  76. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/extraction/test_documents/test_features.csv +0 -0
  77. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/extraction/test_documents/wallace_1.15_3.txt +0 -0
  78. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/extraction/test_documents/wallace_1.1_3.txt +0 -0
  79. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/extraction/test_documents/wallace_1_4.txt +0 -0
  80. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/metrics_statistics/embeddings_metrics_statistics.py +0 -0
  81. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/praat/__init__.py +0 -0
  82. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/preprocessing/LPDS.py +0 -0
  83. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/preprocessing/__init__.py +0 -0
  84. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/preprocessing/pipeline.py +0 -0
  85. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/preprocessing/speaker_diarization.py +0 -0
  86. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/preprocessing/text_cleaner.py +0 -0
  87. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/preprocessing/text_importer.py +0 -0
  88. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/preprocessing/text_normalizer.py +0 -0
  89. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/preprocessing/text_tokenizer.py +0 -0
  90. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/utils/__init__.py +0 -0
  91. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/utils/csv_functions.py +0 -0
  92. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/utils/sample_usage.py +0 -0
  93. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/utils/setup_functions.py +0 -0
  94. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp.egg-info/SOURCES.txt +0 -0
  95. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp.egg-info/dependency_links.txt +0 -0
  96. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp.egg-info/entry_points.txt +0 -0
  97. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp.egg-info/requires.txt +0 -0
  98. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp.egg-info/top_level.txt +0 -0
  99. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pyproject.toml +0 -0
  100. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/requirements.txt +0 -0
  101. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/setup.cfg +0 -0
  102. {pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/tests/__init__.py +0 -0
{pelican_nlp-0.2.3/pelican_nlp.egg-info → pelican_nlp-0.2.5}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pelican_nlp
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- Version: 0.2.3
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+ Version: 0.2.5
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  Summary: Preprocessing and Extraction of Linguistic Information for Computational Analysis
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  Author-email: Yves Pauli <yves.pauli@gmail.com>
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  License-Expression: CC-BY-NC-4.0
pelican_nlp-0.2.5/pelican_nlp/_version.py ADDED
@@ -0,0 +1 @@
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+ __version__ = "0.2.5"
{pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/configuration_files/config_audio.yml RENAMED
@@ -4,7 +4,6 @@
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  # Basic Settings
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  # -------------
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  input_file: "audio" # Options: 'text' or 'audio'
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- PATH_TO_PROJECT_FOLDER: "/home/yvespauli/PycharmProjects/Silvia"
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  language: "dutch" # Options: 'german', 'english'
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  recompute_everything: true # If false, reuses previously computed results
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  output_document_information: true
{pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/configuration_files/config_discourse.yml RENAMED
@@ -5,7 +5,6 @@ discourse: &discourse_flag true
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  #=====================================
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  #general configurations; always adapt
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- PATH_TO_PROJECT_FOLDER: "/home/yvespauli/PycharmProjects/Morteza/"
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  language: "german" # Possibly add options for German and English
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  task_name: "interview" # Give name of task used for creation of the input file (e.g., ['fluency', 'interview'])
{pelican_nlp-0.2.3/pelican_nlp/sample_configuration_files → pelican_nlp-0.2.5/pelican_nlp/configuration_files}/config_fluency.yml RENAMED
@@ -5,7 +5,6 @@ fluency_task: &fluency_flag true
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  #========================================
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  #general configurations; always adapt
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- PATH_TO_PROJECT_FOLDER: "/path/to/your/project"
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  language: "german"
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  multiple_sessions: &session_flag false
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{pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/configuration_files/config_general.yml RENAMED
@@ -4,7 +4,6 @@
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  # Basic Settings
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  # -------------
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  input_file: "text" # Options: 'text' or 'audio'
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- PATH_TO_PROJECT_FOLDER: "/home/yvespauli/PycharmProjects/FluencyTest"
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  language: "german" # Options: 'german', 'english'
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  recompute_everything: true # If false, reuses previously computed results
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{pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/configuration_files/config_morteza.yml RENAMED
@@ -3,8 +3,6 @@
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  input_file: "text" #or 'audio'
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  discourse: &discourse_flag true
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- #PATH_TO_PROJECT_FOLDER: "/home/yvespauli/PycharmProjects/KetamineStudy/KetamineStudy_ProjectFolder/" # Set default to home directory, e.g., '/home/usr/...'
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- PATH_TO_PROJECT_FOLDER: "/home/yvespauli/PycharmProjects/Morteza/"
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  language: "german" # Possibly add options for German and English
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  task_name: "interview" # Give name of task used for creation of the input file (e.g., ['fluency', 'interview'])
{pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/core/corpus.py RENAMED
@@ -21,7 +21,7 @@ class Corpus:
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  self.documents = documents
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  self.config = configuration_settings
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  self.project_folder = project_folder
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- self.derivative_dir = project_folder + '/derivatives'
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+ self.derivative_dir = project_folder / 'derivatives'
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  self.pipeline = TextPreprocessingPipeline(self.config)
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  self.task = configuration_settings['task_name']
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  self.results_path = None
{pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/main.py RENAMED
@@ -90,7 +90,7 @@ class Pelican:
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  print(f'Processing corpus: {corpus_name}')
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  corpus_documents = self._identify_corpus_files(subjects, corpus_name)
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- corpus = Corpus(corpus_name, corpus_documents[corpus_name], self.config)
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+ corpus = Corpus(corpus_name, corpus_documents[corpus_name], self.config, self.project_path)
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  for document in corpus_documents[corpus_name]:
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  document.corpus_name = corpus_name
{pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/sample_configuration_files/config_discourse.yml RENAMED
@@ -5,7 +5,6 @@ discourse: &discourse_flag true
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  #=====================================
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  #general configurations; always adapt
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- PATH_TO_PROJECT_FOLDER: "/path/to/your/project"
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  language: "german" # Possibly add options for German and English
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  task_name: "interview" # Give name of task used for creation of the input file (e.g., ['fluency', 'interview'])
{pelican_nlp-0.2.3/pelican_nlp/configuration_files → pelican_nlp-0.2.5/pelican_nlp/sample_configuration_files}/config_fluency.yml RENAMED
@@ -5,7 +5,6 @@ fluency_task: &fluency_flag true
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  #========================================
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  #general configurations; always adapt
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- PATH_TO_PROJECT_FOLDER: "/home/yvespauli/PycharmProjects/FluencyTest"
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  language: "german"
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  multiple_sessions: &session_flag false
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{pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pelican_nlp/sample_configuration_files/config_general.yml RENAMED
@@ -4,7 +4,6 @@
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  # Basic Settings
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  # -------------
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  input_file: "text" # Options: 'text' or 'audio'
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- PATH_TO_PROJECT_FOLDER: "/path/to/your/project"
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  language: "german"
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  recompute_everything: true # If false, reuses previously computed results
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{pelican_nlp-0.2.3 → pelican_nlp-0.2.5/pelican_nlp.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pelican_nlp
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- Version: 0.2.3
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+ Version: 0.2.5
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  Summary: Preprocessing and Extraction of Linguistic Information for Computational Analysis
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  Author-email: Yves Pauli <yves.pauli@gmail.com>
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  License-Expression: CC-BY-NC-4.0
pelican_nlp-0.2.3/pelican_nlp/_version.py DELETED
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- __version__ = "0.2.3"
{pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/LICENSE RENAMED
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{pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/MANIFEST.in RENAMED
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{pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/README.rst RENAMED
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{pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/pyproject.toml RENAMED
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{pelican_nlp-0.2.3 → pelican_nlp-0.2.5}/setup.cfg RENAMED
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