pelican-nlp 0.2.2__tar.gz → 0.2.3__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pelican_nlp-0.2.2/pelican_nlp.egg-info → pelican_nlp-0.2.3}/PKG-INFO +1 -1
- pelican_nlp-0.2.3/pelican_nlp/_version.py +1 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/core/corpus.py +6 -6
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3/pelican_nlp.egg-info}/PKG-INFO +1 -1
- pelican_nlp-0.2.2/pelican_nlp/_version.py +0 -1
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/LICENSE +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/MANIFEST.in +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/README.rst +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_discourse/config_discourse.yml +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_discourse/subjects/sub-01/interview/sub-01_interview_schizophrenia_run-01.rtf +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_fluency/config_fluency.yml +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_fluency/subjects/sub-01/fluency/sub-01_fluency_sem_animals.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_fluency/subjects/sub-01/fluency/sub-01_fluency_sem_clothes.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_fluency/subjects/sub-01/fluency/sub-01_fluency_sem_food.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_fluency/subjects/sub-02/fluency/sub-02_fluency_sem_animals.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_fluency/subjects/sub-02/fluency/sub-02_fluency_sem_clothes.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_fluency/subjects/sub-02/fluency/sub-02_fluency_sem_food.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_image-descriptions/config_image-descriptions.yml +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_image-descriptions/subjects/sub-01/ses-01/image-description/sub-01_ses-01_image-description_drug.docx +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_image-descriptions/subjects/sub-01/ses-01/image-description/sub-01_ses-01_image-description_placebo.docx +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_image-descriptions/subjects/sub-01/ses-02/image-description/sub-01_ses-02_image-description_drug.docx +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_image-descriptions/subjects/sub-01/ses-02/image-description/sub-01_ses-02_image-description_placebo.docx +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_image-descriptions/subjects/sub-02/ses-01/image-description/sub-02_ses-01_image-description_drug.docx +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/examples/PyPI_testing_image-descriptions/subjects/sub-02/ses-01/image-description/sub-02_ses-01_image-description_placebo.docx +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/__init__.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/extract_acoustic_features.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/fluency/__init__.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/fluency/aggregate_fluency_results.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/fluency/behavioral_data.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/fluency/check_duplicates.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/fluency/coherence.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/fluency/config.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/fluency/main.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/fluency/optimality_without_tsa.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/fluency/plot_fluency.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/fluency/plotting_utils.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/fluency/questionnaires_data.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/fluency/stats_fluency.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/fluency/utils.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/speaker_diarization_Nils.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/transcription/__init__.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/transcription/annotation_tool.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/transcription/annotation_tool_boundaries.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/transcription/annotation_tool_sandbox.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/transcription/output/holmes_control_nova_all_outputs.json +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/transcription/test.json +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/transcription/transcribe_audio.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/transcription/transcribe_audio_chunked.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/transcription/transcription.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/transcription/transcription_gui.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Nils_backup/transcription/word_boundaries.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Silvia_files/Opensmile/opensmile_feature_extraction.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/Silvia_files/prosogram/prosogram.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/__init__.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/cli.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/configuration_files/config_audio.yml +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/configuration_files/config_discourse.yml +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/configuration_files/config_fluency.yml +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/configuration_files/config_general.yml +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/configuration_files/config_morteza.yml +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/core/__init__.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/core/audio_document.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/core/document.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/core/subject.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/extraction/__init__.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/extraction/acoustic_feature_extraction.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/extraction/distance_from_randomness.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/extraction/extract_embeddings.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/extraction/extract_logits.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/extraction/language_model.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/extraction/semantic_similarity.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/extraction/test_documents/test_features.csv +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/extraction/test_documents/wallace_1.15_3.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/extraction/test_documents/wallace_1.1_3.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/extraction/test_documents/wallace_1_4.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/main.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/metrics_statistics/embeddings_metrics_statistics.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/praat/__init__.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/preprocessing/LPDS.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/preprocessing/__init__.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/preprocessing/pipeline.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/preprocessing/speaker_diarization.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/preprocessing/text_cleaner.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/preprocessing/text_importer.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/preprocessing/text_normalizer.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/preprocessing/text_tokenizer.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/sample_configuration_files/config_discourse.yml +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/sample_configuration_files/config_fluency.yml +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/sample_configuration_files/config_general.yml +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/utils/__init__.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/utils/csv_functions.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/utils/sample_usage.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp/utils/setup_functions.py +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp.egg-info/SOURCES.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp.egg-info/dependency_links.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp.egg-info/entry_points.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp.egg-info/requires.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pelican_nlp.egg-info/top_level.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/pyproject.toml +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/requirements.txt +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/setup.cfg +0 -0
- {pelican_nlp-0.2.2 → pelican_nlp-0.2.3}/tests/__init__.py +0 -0
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__version__ = "0.2.3"
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import re
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class Corpus:
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def __init__(self, corpus_name, documents, configuration_settings):
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def __init__(self, corpus_name, documents, configuration_settings, project_folder):
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self.name = corpus_name
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self.documents = documents
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self.config = configuration_settings
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self.
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self.project_folder = project_folder
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self.derivative_dir = project_folder + '/derivatives'
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self.pipeline = TextPreprocessingPipeline(self.config)
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self.task = configuration_settings['task_name']
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self.results_path = None
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from pelican_nlp.extraction.extract_logits import LogitsExtractor
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from pelican_nlp.preprocessing.text_tokenizer import TextTokenizer
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logits_options = self.config['options_logits']
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project_path = self.config['PATH_TO_PROJECT_FOLDER']
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print('logits extraction in progress')
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model_name = logits_options['model_name']
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logitsExtractor = LogitsExtractor(logits_options,
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model = Model(model_name,
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model = Model(model_name, self.project_folder)
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model.load_model()
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model_instance = model.model_instance
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tokenizer = TextTokenizer(logits_options['tokenization_method'], model_name=logits_options['model_name'])
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embedding_options = self.config['options_embeddings']
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print('Embeddings extraction in progress...')
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embeddingsExtractor = EmbeddingsExtractor(embedding_options, self.
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embeddingsExtractor = EmbeddingsExtractor(embedding_options, self.project_folder)
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for i in range(len(self.documents)):
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for key, section in self.documents[i].cleaned_sections.items():
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print(f'Processing section {key}')
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__version__ = "0.2.2"
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