pelican-nlp 0.2.0__tar.gz → 0.2.2__tar.gz

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Files changed (102) hide show
  1. {pelican_nlp-0.2.0/pelican_nlp.egg-info → pelican_nlp-0.2.2}/PKG-INFO +1 -1
  2. pelican_nlp-0.2.2/pelican_nlp/_version.py +1 -0
  3. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/main.py +3 -6
  4. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/utils/setup_functions.py +1 -2
  5. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2/pelican_nlp.egg-info}/PKG-INFO +1 -1
  6. pelican_nlp-0.2.0/pelican_nlp/_version.py +0 -1
  7. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/LICENSE +0 -0
  8. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/MANIFEST.in +0 -0
  9. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/README.rst +0 -0
  10. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_discourse/config_discourse.yml +0 -0
  11. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_discourse/subjects/sub-01/interview/sub-01_interview_schizophrenia_run-01.rtf +0 -0
  12. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_fluency/config_fluency.yml +0 -0
  13. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_fluency/subjects/sub-01/fluency/sub-01_fluency_sem_animals.txt +0 -0
  14. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_fluency/subjects/sub-01/fluency/sub-01_fluency_sem_clothes.txt +0 -0
  15. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_fluency/subjects/sub-01/fluency/sub-01_fluency_sem_food.txt +0 -0
  16. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_fluency/subjects/sub-02/fluency/sub-02_fluency_sem_animals.txt +0 -0
  17. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_fluency/subjects/sub-02/fluency/sub-02_fluency_sem_clothes.txt +0 -0
  18. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_fluency/subjects/sub-02/fluency/sub-02_fluency_sem_food.txt +0 -0
  19. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_image-descriptions/config_image-descriptions.yml +0 -0
  20. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_image-descriptions/subjects/sub-01/ses-01/image-description/sub-01_ses-01_image-description_drug.docx +0 -0
  21. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_image-descriptions/subjects/sub-01/ses-01/image-description/sub-01_ses-01_image-description_placebo.docx +0 -0
  22. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_image-descriptions/subjects/sub-01/ses-02/image-description/sub-01_ses-02_image-description_drug.docx +0 -0
  23. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_image-descriptions/subjects/sub-01/ses-02/image-description/sub-01_ses-02_image-description_placebo.docx +0 -0
  24. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_image-descriptions/subjects/sub-02/ses-01/image-description/sub-02_ses-01_image-description_drug.docx +0 -0
  25. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/examples/PyPI_testing_image-descriptions/subjects/sub-02/ses-01/image-description/sub-02_ses-01_image-description_placebo.docx +0 -0
  26. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/__init__.py +0 -0
  27. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/extract_acoustic_features.py +0 -0
  28. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/fluency/__init__.py +0 -0
  29. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/fluency/aggregate_fluency_results.py +0 -0
  30. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/fluency/behavioral_data.py +0 -0
  31. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/fluency/check_duplicates.py +0 -0
  32. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/fluency/coherence.py +0 -0
  33. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/fluency/config.py +0 -0
  34. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/fluency/main.py +0 -0
  35. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/fluency/optimality_without_tsa.py +0 -0
  36. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/fluency/plot_fluency.py +0 -0
  37. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/fluency/plotting_utils.py +0 -0
  38. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/fluency/questionnaires_data.py +0 -0
  39. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/fluency/stats_fluency.py +0 -0
  40. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/fluency/utils.py +0 -0
  41. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/speaker_diarization_Nils.py +0 -0
  42. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/transcription/__init__.py +0 -0
  43. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/transcription/annotation_tool.py +0 -0
  44. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/transcription/annotation_tool_boundaries.py +0 -0
  45. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/transcription/annotation_tool_sandbox.py +0 -0
  46. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/transcription/output/holmes_control_nova_all_outputs.json +0 -0
  47. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/transcription/test.json +0 -0
  48. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/transcription/transcribe_audio.py +0 -0
  49. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/transcription/transcribe_audio_chunked.py +0 -0
  50. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/transcription/transcription.py +0 -0
  51. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/transcription/transcription_gui.py +0 -0
  52. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Nils_backup/transcription/word_boundaries.py +0 -0
  53. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Silvia_files/Opensmile/opensmile_feature_extraction.py +0 -0
  54. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/Silvia_files/prosogram/prosogram.py +0 -0
  55. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/__init__.py +0 -0
  56. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/cli.py +0 -0
  57. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/configuration_files/config_audio.yml +0 -0
  58. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/configuration_files/config_discourse.yml +0 -0
  59. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/configuration_files/config_fluency.yml +0 -0
  60. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/configuration_files/config_general.yml +0 -0
  61. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/configuration_files/config_morteza.yml +0 -0
  62. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/core/__init__.py +0 -0
  63. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/core/audio_document.py +0 -0
  64. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/core/corpus.py +0 -0
  65. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/core/document.py +0 -0
  66. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/core/subject.py +0 -0
  67. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/extraction/__init__.py +0 -0
  68. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/extraction/acoustic_feature_extraction.py +0 -0
  69. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/extraction/distance_from_randomness.py +0 -0
  70. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/extraction/extract_embeddings.py +0 -0
  71. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/extraction/extract_logits.py +0 -0
  72. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/extraction/language_model.py +0 -0
  73. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/extraction/semantic_similarity.py +0 -0
  74. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/extraction/test_documents/test_features.csv +0 -0
  75. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/extraction/test_documents/wallace_1.15_3.txt +0 -0
  76. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/extraction/test_documents/wallace_1.1_3.txt +0 -0
  77. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/extraction/test_documents/wallace_1_4.txt +0 -0
  78. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/metrics_statistics/embeddings_metrics_statistics.py +0 -0
  79. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/praat/__init__.py +0 -0
  80. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/preprocessing/LPDS.py +0 -0
  81. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/preprocessing/__init__.py +0 -0
  82. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/preprocessing/pipeline.py +0 -0
  83. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/preprocessing/speaker_diarization.py +0 -0
  84. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/preprocessing/text_cleaner.py +0 -0
  85. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/preprocessing/text_importer.py +0 -0
  86. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/preprocessing/text_normalizer.py +0 -0
  87. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/preprocessing/text_tokenizer.py +0 -0
  88. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/sample_configuration_files/config_discourse.yml +0 -0
  89. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/sample_configuration_files/config_fluency.yml +0 -0
  90. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/sample_configuration_files/config_general.yml +0 -0
  91. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/utils/__init__.py +0 -0
  92. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/utils/csv_functions.py +0 -0
  93. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp/utils/sample_usage.py +0 -0
  94. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp.egg-info/SOURCES.txt +0 -0
  95. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp.egg-info/dependency_links.txt +0 -0
  96. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp.egg-info/entry_points.txt +0 -0
  97. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp.egg-info/requires.txt +0 -0
  98. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pelican_nlp.egg-info/top_level.txt +0 -0
  99. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/pyproject.toml +0 -0
  100. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/requirements.txt +0 -0
  101. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/setup.cfg +0 -0
  102. {pelican_nlp-0.2.0 → pelican_nlp-0.2.2}/tests/__init__.py +0 -0
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
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  Name: pelican_nlp
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- Version: 0.2.0
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+ Version: 0.2.2
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  Summary: Preprocessing and Extraction of Linguistic Information for Computational Analysis
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  Author-email: Yves Pauli <yves.pauli@gmail.com>
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  License-Expression: CC-BY-NC-4.0
@@ -0,0 +1 @@
1
+ __version__ = "0.2.2"
@@ -24,9 +24,6 @@ from pelican_nlp.core import Corpus
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24
  from pelican_nlp.utils.setup_functions import subject_instantiator, load_config, remove_previous_derivative_dir
25
25
  from pelican_nlp.preprocessing import LPDS
26
26
 
27
- # Constants
28
- # DEFAULT_CONFIG_PATH = 'configuration_files/config_morteza.yml'
29
-
30
27
  class Pelican:
31
28
 
32
29
  """Main class for the Pelican project handling document processing and metric extraction."""
@@ -47,9 +44,9 @@ class Pelican:
47
44
  # Verify the provided path is a YAML file
48
45
  elif not config_path.endswith(('.yml', '.yaml')):
49
46
  sys.exit('Error: Configuration file must be a YAML file (*.yml or *.yaml)')
50
-
47
+
51
48
  self.config = load_config(config_path)
52
- self.project_path = Path(self.config['PATH_TO_PROJECT_FOLDER'])
49
+ self.project_path = Path(config_path).resolve().parent
53
50
  self.path_to_subjects = self.project_path / 'subjects'
54
51
  self.output_directory = self.project_path / 'derivatives'
55
52
  self.task = self.config['task_name']
@@ -81,7 +78,7 @@ class Pelican:
81
78
  self._LPDS()
82
79
 
83
80
  # Instantiate all subjects
84
- subjects = subject_instantiator(self.config)
81
+ subjects = subject_instantiator(self.config, self.project_path)
85
82
 
86
83
  # Process each corpus
87
84
  for corpus_name in self.config['corpus_names']:
@@ -4,8 +4,7 @@ import shutil
4
4
  import yaml
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5
  import sys
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6
 
7
- def subject_instantiator(config):
8
- project_folder = config['PATH_TO_PROJECT_FOLDER']
7
+ def subject_instantiator(config, project_folder):
9
8
  path_to_subjects = os.path.join(project_folder, 'subjects')
10
9
  print('Instantiating Subjects...')
11
10
  subjects = [Subject(subject) for subject in os.listdir(path_to_subjects)]
@@ -1,6 +1,6 @@
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1
  Metadata-Version: 2.4
2
2
  Name: pelican_nlp
3
- Version: 0.2.0
3
+ Version: 0.2.2
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4
  Summary: Preprocessing and Extraction of Linguistic Information for Computational Analysis
5
5
  Author-email: Yves Pauli <yves.pauli@gmail.com>
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  License-Expression: CC-BY-NC-4.0
@@ -1 +0,0 @@
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- __version__ = "0.2.0"
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