pdesolver 0.1.2__tar.gz → 0.1.3__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pdesolver-0.1.2 → pdesolver-0.1.3}/PKG-INFO +1 -1
- {pdesolver-0.1.2 → pdesolver-0.1.3}/pdesolver.egg-info/PKG-INFO +1 -1
- pdesolver-0.1.3/pdesolver.egg-info/SOURCES.txt +14 -0
- pdesolver-0.1.3/pdesolver.egg-info/top_level.txt +1 -0
- {pdesolver-0.1.2 → pdesolver-0.1.3}/pyproject.toml +1 -1
- pdesolver-0.1.2/pdesolver/Auxs/FuncAux.py +0 -24
- pdesolver-0.1.2/pdesolver/Auxs/PDESEncoder.py +0 -13
- pdesolver-0.1.2/pdesolver/Auxs/Visualize.py +0 -266
- pdesolver-0.1.2/pdesolver/Auxs/__init__.py +0 -2
- pdesolver-0.1.2/pdesolver/Disc/Disc.py +0 -372
- pdesolver-0.1.2/pdesolver/Disc/__init__.py +0 -1
- pdesolver-0.1.2/pdesolver/Disc/boundaries/__init__.py +0 -44
- pdesolver-0.1.2/pdesolver/Disc/boundaries/boundary_base.py +0 -36
- pdesolver-0.1.2/pdesolver/Disc/boundaries/dirichlet.py +0 -83
- pdesolver-0.1.2/pdesolver/Disc/boundaries/neumann.py +0 -48
- pdesolver-0.1.2/pdesolver/Disc/boundaries/periodic_example.py +0 -30
- pdesolver-0.1.2/pdesolver/Disc/boundaries/robin.py +0 -51
- pdesolver-0.1.2/pdesolver/PDE.py +0 -29
- pdesolver-0.1.2/pdesolver/PDES.py +0 -196
- pdesolver-0.1.2/pdesolver/Solvers/CN.py +0 -157
- pdesolver-0.1.2/pdesolver/Solvers/RKF.py +0 -395
- pdesolver-0.1.2/pdesolver/Solvers/__init__.py +0 -3
- pdesolver-0.1.2/pdesolver/Solvers/bdf2.py +0 -186
- pdesolver-0.1.2/pdesolver/Solvers/solver_base.py +0 -304
- pdesolver-0.1.2/pdesolver/__init__.py +0 -5
- pdesolver-0.1.2/pdesolver.egg-info/SOURCES.txt +0 -34
- pdesolver-0.1.2/pdesolver.egg-info/top_level.txt +0 -1
- {pdesolver-0.1.2 → pdesolver-0.1.3}/README.md +0 -0
- {pdesolver-0.1.2 → pdesolver-0.1.3}/pdesolver.egg-info/dependency_links.txt +0 -0
- {pdesolver-0.1.2 → pdesolver-0.1.3}/pdesolver.egg-info/requires.txt +0 -0
- {pdesolver-0.1.2 → pdesolver-0.1.3}/setup.cfg +0 -0
- {pdesolver-0.1.2 → pdesolver-0.1.3}/tests/test_adveccao.py +0 -0
- {pdesolver-0.1.2 → pdesolver-0.1.3}/tests/test_burgers.py +0 -0
- {pdesolver-0.1.2 → pdesolver-0.1.3}/tests/test_calor.py +0 -0
- {pdesolver-0.1.2 → pdesolver-0.1.3}/tests/test_fitzhugh.py +0 -0
- {pdesolver-0.1.2 → pdesolver-0.1.3}/tests/test_load.py +0 -0
- {pdesolver-0.1.2 → pdesolver-0.1.3}/tests/test_reacao1d.py +0 -0
- {pdesolver-0.1.2 → pdesolver-0.1.3}/tests/tests__init__.py +0 -0
|
@@ -0,0 +1,14 @@
|
|
|
1
|
+
README.md
|
|
2
|
+
pyproject.toml
|
|
3
|
+
pdesolver.egg-info/PKG-INFO
|
|
4
|
+
pdesolver.egg-info/SOURCES.txt
|
|
5
|
+
pdesolver.egg-info/dependency_links.txt
|
|
6
|
+
pdesolver.egg-info/requires.txt
|
|
7
|
+
pdesolver.egg-info/top_level.txt
|
|
8
|
+
tests/test_adveccao.py
|
|
9
|
+
tests/test_burgers.py
|
|
10
|
+
tests/test_calor.py
|
|
11
|
+
tests/test_fitzhugh.py
|
|
12
|
+
tests/test_load.py
|
|
13
|
+
tests/test_reacao1d.py
|
|
14
|
+
tests/tests__init__.py
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
|
|
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
|
|
|
4
4
|
|
|
5
5
|
[project]
|
|
6
6
|
name = "pdesolver"
|
|
7
|
-
version = "0.1.
|
|
7
|
+
version = "0.1.3"
|
|
8
8
|
description = "Symbolic PDE solver using finite difference discretization"
|
|
9
9
|
readme = {file = "README.md", content-type = "text/markdown"}
|
|
10
10
|
license = { text = "MIT" }
|
|
@@ -1,24 +0,0 @@
|
|
|
1
|
-
import re
|
|
2
|
-
|
|
3
|
-
import sympy as sp
|
|
4
|
-
from sympy.parsing.sympy_parser import parse_expr
|
|
5
|
-
|
|
6
|
-
def symbol_references(in_list):
|
|
7
|
-
slist = []
|
|
8
|
-
|
|
9
|
-
for e in in_list:
|
|
10
|
-
globals()[e] = sp.Symbol(e)
|
|
11
|
-
slist.append(e)
|
|
12
|
-
return slist
|
|
13
|
-
|
|
14
|
-
def d_dt(expr_str: str) -> str:
|
|
15
|
-
t = sp.Symbol('t')
|
|
16
|
-
try:
|
|
17
|
-
e = parse_expr(expr_str, evaluate=False)
|
|
18
|
-
return str(sp.diff(e, t))
|
|
19
|
-
except Exception:
|
|
20
|
-
return expr_str
|
|
21
|
-
|
|
22
|
-
def repl_symbol(expr: str, sym: str, repl: str) -> str:
|
|
23
|
-
pattern = rf'(?<![A-Za-z0-9_]){sym}(?![A-Za-z0-9_])'
|
|
24
|
-
return re.sub(pattern, repl, expr)
|
|
@@ -1,13 +0,0 @@
|
|
|
1
|
-
import json
|
|
2
|
-
import numpy as np
|
|
3
|
-
import sympy as sp
|
|
4
|
-
|
|
5
|
-
class PDESEncoder(json.JSONEncoder):
|
|
6
|
-
def default(self, obj):
|
|
7
|
-
if isinstance(obj, np.ndarray):
|
|
8
|
-
return obj.tolist()
|
|
9
|
-
if isinstance(obj, sp.Basic):
|
|
10
|
-
return str(obj)
|
|
11
|
-
if hasattr(obj, '__dict__'):
|
|
12
|
-
return obj.__dict__
|
|
13
|
-
return super().default(obj)
|
|
@@ -1,266 +0,0 @@
|
|
|
1
|
-
|
|
2
|
-
import numpy as np
|
|
3
|
-
import matplotlib.pyplot as plt
|
|
4
|
-
from matplotlib.animation import FuncAnimation
|
|
5
|
-
|
|
6
|
-
|
|
7
|
-
def visualize(pdes_obj, mode='heatmap', func_idx=0, time_step=-1, **kwargs):
|
|
8
|
-
|
|
9
|
-
if pdes_obj.results is None:
|
|
10
|
-
print("Erro: rode .solve() antes de visualizar.")
|
|
11
|
-
return
|
|
12
|
-
|
|
13
|
-
_, historico = pdes_obj.results
|
|
14
|
-
|
|
15
|
-
if not historico or not historico[func_idx]:
|
|
16
|
-
print("Erro: histórico vazio.")
|
|
17
|
-
return
|
|
18
|
-
|
|
19
|
-
if _is_1d(pdes_obj):
|
|
20
|
-
x = _get_x1d(pdes_obj)
|
|
21
|
-
if mode in ('plot1d', 'plot'):
|
|
22
|
-
plot1d(historico, x, pdes_obj.funcs, func_idx, time_step, **kwargs)
|
|
23
|
-
elif mode == 'plot1d_all':
|
|
24
|
-
plot1d_all(historico, x, pdes_obj.funcs, func_idx, **kwargs)
|
|
25
|
-
elif mode == 'heatmap1d':
|
|
26
|
-
heatmap1d(historico, x, pdes_obj.funcs, pdes_obj.pdes, func_idx, **kwargs)
|
|
27
|
-
elif mode == 'animation1d':
|
|
28
|
-
animate1d(historico, x, pdes_obj.funcs, func_idx, **kwargs)
|
|
29
|
-
else:
|
|
30
|
-
print(f"Modo '{mode}' não reconhecido para 1D. "
|
|
31
|
-
f"Use: 'plot1d', 'plot1d_all', 'heatmap1d', 'animation1d'.")
|
|
32
|
-
return
|
|
33
|
-
|
|
34
|
-
nx, ny = pdes_obj.disc_n
|
|
35
|
-
x = np.linspace(0, 1, nx)
|
|
36
|
-
y = np.linspace(0, 1, ny)
|
|
37
|
-
X, Y = np.meshgrid(x, y, indexing='ij')
|
|
38
|
-
|
|
39
|
-
if mode == 'heatmap':
|
|
40
|
-
plot_heatmap(historico, X, Y, pdes_obj.funcs, pdes_obj.disc_n, func_idx, time_step)
|
|
41
|
-
elif mode == 'animation':
|
|
42
|
-
animate2d(historico, X, Y, pdes_obj.funcs, pdes_obj.disc_n, func_idx, **kwargs)
|
|
43
|
-
elif mode == 'plot3d':
|
|
44
|
-
plot3d(historico, X, Y, pdes_obj.funcs, pdes_obj.disc_n, func_idx, time_step, **kwargs)
|
|
45
|
-
elif mode == 'animation3d':
|
|
46
|
-
animate3d(historico, X, Y, pdes_obj.funcs, pdes_obj.disc_n, func_idx, **kwargs)
|
|
47
|
-
else:
|
|
48
|
-
print(f"Modo '{mode}' desconhecido para 2D. "
|
|
49
|
-
f"Use: 'heatmap', 'animation', 'plot3d', 'animation3d'.")
|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
def _is_1d(pdes_obj):
|
|
53
|
-
return len(pdes_obj.disc_n) == 1
|
|
54
|
-
|
|
55
|
-
|
|
56
|
-
def _get_x1d(pdes_obj):
|
|
57
|
-
a, b = pdes_obj.pdes[0].ivar_boundary[0]
|
|
58
|
-
return np.linspace(a, b, pdes_obj.disc_n[0])
|
|
59
|
-
|
|
60
|
-
|
|
61
|
-
def plot1d(historico, x, funcs, func_idx, time_step, **kwargs):
|
|
62
|
-
color = kwargs.get('color', 'steelblue')
|
|
63
|
-
lw = kwargs.get('lw', 2)
|
|
64
|
-
|
|
65
|
-
data = np.array(historico[func_idx][time_step])
|
|
66
|
-
label = time_step if time_step >= 0 else len(historico[func_idx]) + time_step
|
|
67
|
-
|
|
68
|
-
fig, ax = plt.subplots(figsize=(7, 4))
|
|
69
|
-
ax.plot(x, data, color=color, linewidth=lw, label=f't = passo {label}')
|
|
70
|
-
ax.set_xlabel('x')
|
|
71
|
-
ax.set_ylabel(funcs[func_idx])
|
|
72
|
-
ax.set_title(f"Perfil de {funcs[func_idx]} — passo {label}")
|
|
73
|
-
ax.legend()
|
|
74
|
-
ax.grid(True, alpha=0.3)
|
|
75
|
-
plt.tight_layout()
|
|
76
|
-
plt.show()
|
|
77
|
-
|
|
78
|
-
|
|
79
|
-
def plot1d_all(historico, x, funcs, func_idx, **kwargs):
|
|
80
|
-
n_profiles = kwargs.get('n_profiles', 10)
|
|
81
|
-
cmap = kwargs.get('cmap', 'viridis')
|
|
82
|
-
lw = kwargs.get('lw', 1.5)
|
|
83
|
-
tf_real = kwargs.get('tf', None)
|
|
84
|
-
|
|
85
|
-
n_passos = len(historico[func_idx])
|
|
86
|
-
indices = np.linspace(0, n_passos - 1, n_profiles, dtype=int)
|
|
87
|
-
cm = plt.get_cmap(cmap)
|
|
88
|
-
colors = [cm(i / (n_profiles - 1)) for i in range(n_profiles)]
|
|
89
|
-
|
|
90
|
-
fig, ax = plt.subplots(figsize=(8, 5))
|
|
91
|
-
|
|
92
|
-
for idx_cor, idx_passo in enumerate(indices):
|
|
93
|
-
data = np.array(historico[func_idx][idx_passo])
|
|
94
|
-
if tf_real is not None:
|
|
95
|
-
t_val = tf_real * idx_passo / (n_passos - 1)
|
|
96
|
-
lbl = f't = {t_val:.2f}'
|
|
97
|
-
else:
|
|
98
|
-
lbl = f'passo {idx_passo}'
|
|
99
|
-
ax.plot(x, data, color=colors[idx_cor], linewidth=lw, label=lbl)
|
|
100
|
-
|
|
101
|
-
ax.set_xlabel('x')
|
|
102
|
-
ax.set_ylabel(funcs[func_idx])
|
|
103
|
-
ax.set_title(f"Evolução de {funcs[func_idx]} ao longo do tempo")
|
|
104
|
-
ax.legend(fontsize=8, loc='best')
|
|
105
|
-
ax.grid(True, alpha=0.3)
|
|
106
|
-
|
|
107
|
-
sm = plt.cm.ScalarMappable(cmap=cmap, norm=plt.Normalize(vmin=0, vmax=1))
|
|
108
|
-
sm.set_array([])
|
|
109
|
-
cbar = plt.colorbar(sm, ax=ax, pad=0.02)
|
|
110
|
-
cbar.set_label('t / tf')
|
|
111
|
-
|
|
112
|
-
plt.tight_layout()
|
|
113
|
-
plt.show()
|
|
114
|
-
|
|
115
|
-
|
|
116
|
-
def heatmap1d(historico, x, funcs, pdes, func_idx, **kwargs):
|
|
117
|
-
cmap = kwargs.get('cmap', 'viridis')
|
|
118
|
-
tf_real = kwargs.get('tf', None)
|
|
119
|
-
|
|
120
|
-
matriz = np.array(historico[func_idx])
|
|
121
|
-
n_passos = matriz.shape[0]
|
|
122
|
-
t_max = tf_real if tf_real is not None else n_passos - 1
|
|
123
|
-
a, b = pdes[0].ivar_boundary[0]
|
|
124
|
-
|
|
125
|
-
fig, ax = plt.subplots(figsize=(8, 5))
|
|
126
|
-
im = ax.imshow(
|
|
127
|
-
matriz.T,
|
|
128
|
-
aspect='auto',
|
|
129
|
-
origin='lower',
|
|
130
|
-
extent=[0, t_max, a, b],
|
|
131
|
-
cmap=cmap
|
|
132
|
-
)
|
|
133
|
-
ax.set_xlabel('t')
|
|
134
|
-
ax.set_ylabel('x')
|
|
135
|
-
ax.set_title(f"Evolução espaciotemporal de {funcs[func_idx]}")
|
|
136
|
-
plt.colorbar(im, ax=ax, label=funcs[func_idx])
|
|
137
|
-
plt.tight_layout()
|
|
138
|
-
plt.show()
|
|
139
|
-
|
|
140
|
-
|
|
141
|
-
def animate1d(historico, x, funcs, func_idx, **kwargs):
|
|
142
|
-
frames_step = kwargs.get('frames_step', 1)
|
|
143
|
-
interval = kwargs.get('interval', 50)
|
|
144
|
-
color = kwargs.get('color', 'steelblue')
|
|
145
|
-
lw = kwargs.get('lw', 2)
|
|
146
|
-
tf_real = kwargs.get('tf', None)
|
|
147
|
-
|
|
148
|
-
n_passos = len(historico[func_idx])
|
|
149
|
-
frames = list(range(0, n_passos, frames_step))
|
|
150
|
-
|
|
151
|
-
todos = np.concatenate([historico[func_idx][f] for f in frames])
|
|
152
|
-
y_min, y_max = todos.min(), todos.max()
|
|
153
|
-
margem = (y_max - y_min) * 0.05 or 0.1
|
|
154
|
-
|
|
155
|
-
fig, ax = plt.subplots(figsize=(8, 4))
|
|
156
|
-
linha, = ax.plot(x, historico[func_idx][0], color=color, linewidth=lw)
|
|
157
|
-
ax.set_xlim(x[0], x[-1])
|
|
158
|
-
ax.set_ylim(y_min - margem, y_max + margem)
|
|
159
|
-
ax.set_xlabel('x')
|
|
160
|
-
ax.set_ylabel(funcs[func_idx])
|
|
161
|
-
ax.grid(True, alpha=0.3)
|
|
162
|
-
titulo = ax.set_title('')
|
|
163
|
-
|
|
164
|
-
def update(frame_idx):
|
|
165
|
-
passo = frames[frame_idx]
|
|
166
|
-
linha.set_ydata(np.array(historico[func_idx][passo]))
|
|
167
|
-
if tf_real is not None:
|
|
168
|
-
t_val = tf_real * passo / (n_passos - 1)
|
|
169
|
-
titulo.set_text(f"{funcs[func_idx]} — t = {t_val:.3f}")
|
|
170
|
-
else:
|
|
171
|
-
titulo.set_text(f"{funcs[func_idx]} — passo {passo}")
|
|
172
|
-
return linha, titulo
|
|
173
|
-
|
|
174
|
-
anim = FuncAnimation(fig, update, frames=len(frames),
|
|
175
|
-
interval=interval, blit=True)
|
|
176
|
-
plt.tight_layout()
|
|
177
|
-
plt.show()
|
|
178
|
-
|
|
179
|
-
def plot_heatmap(historico, X, Y, funcs, disc_n, func_idx, time_step):
|
|
180
|
-
data = np.array(historico[func_idx][time_step]).reshape(disc_n)
|
|
181
|
-
plt.figure(figsize=(7, 6))
|
|
182
|
-
contorno = plt.contourf(X, Y, data, levels=30, cmap='hot')
|
|
183
|
-
plt.title(f"Distribuição de {funcs[func_idx]} no passo {time_step}")
|
|
184
|
-
plt.colorbar(contorno)
|
|
185
|
-
plt.show()
|
|
186
|
-
|
|
187
|
-
|
|
188
|
-
def animate2d(historico, X, Y, funcs, disc_n, func_idx, **kwargs):
|
|
189
|
-
frames_step = kwargs.get('frames_step', 1)
|
|
190
|
-
interval = kwargs.get('interval', 50)
|
|
191
|
-
|
|
192
|
-
fig, ax = plt.subplots(figsize=(7, 6))
|
|
193
|
-
Z_ini = np.array(historico[func_idx][0]).reshape(disc_n)
|
|
194
|
-
contorno = ax.contourf(X, Y, Z_ini, levels=30, cmap='hot')
|
|
195
|
-
fig.colorbar(contorno, ax=ax)
|
|
196
|
-
|
|
197
|
-
def update(frame):
|
|
198
|
-
ax.clear()
|
|
199
|
-
Z = np.array(historico[func_idx][frame]).reshape(disc_n)
|
|
200
|
-
cont = ax.contourf(X, Y, Z, levels=30, cmap='hot')
|
|
201
|
-
ax.set_title(f"Evolução de {funcs[func_idx]} - Passo {frame}")
|
|
202
|
-
ax.set_xlabel('x')
|
|
203
|
-
ax.set_ylabel('y')
|
|
204
|
-
return cont,
|
|
205
|
-
|
|
206
|
-
frames_list = range(0, len(historico[func_idx]), frames_step)
|
|
207
|
-
anim = FuncAnimation(fig, update, frames=frames_list,
|
|
208
|
-
interval=interval, blit=False)
|
|
209
|
-
plt.show()
|
|
210
|
-
|
|
211
|
-
|
|
212
|
-
def plot3d(historico, X, Y, funcs, disc_n, func_idx, time_step, **kwargs):
|
|
213
|
-
cmap = kwargs.get('cmap', 'hot')
|
|
214
|
-
alpha = kwargs.get('alpha', 1.0)
|
|
215
|
-
elev = kwargs.get('elev', 30)
|
|
216
|
-
azim = kwargs.get('azim', -60)
|
|
217
|
-
|
|
218
|
-
data = np.array(historico[func_idx][time_step]).reshape(disc_n)
|
|
219
|
-
label = time_step if time_step >= 0 else len(historico[func_idx]) + time_step
|
|
220
|
-
|
|
221
|
-
fig = plt.figure(figsize=(8, 6))
|
|
222
|
-
ax = fig.add_subplot(111, projection='3d')
|
|
223
|
-
ax.plot_surface(X, Y, data, cmap=cmap, alpha=alpha)
|
|
224
|
-
ax.set_title(f"Superfície 3D de {funcs[func_idx]} - Passo {label}")
|
|
225
|
-
ax.set_xlabel('x')
|
|
226
|
-
ax.set_ylabel('y')
|
|
227
|
-
ax.set_zlabel(str(funcs[func_idx]))
|
|
228
|
-
ax.view_init(elev=elev, azim=azim)
|
|
229
|
-
plt.tight_layout()
|
|
230
|
-
plt.show()
|
|
231
|
-
|
|
232
|
-
|
|
233
|
-
def animate3d(historico, X, Y, funcs, disc_n, func_idx, **kwargs):
|
|
234
|
-
frames_step = kwargs.get('frames_step', 1)
|
|
235
|
-
interval = kwargs.get('interval', 50)
|
|
236
|
-
cmap = kwargs.get('cmap', 'hot')
|
|
237
|
-
alpha = kwargs.get('alpha', 1.0)
|
|
238
|
-
elev = kwargs.get('elev', 30)
|
|
239
|
-
azim = kwargs.get('azim', -60)
|
|
240
|
-
|
|
241
|
-
todos_frames = [
|
|
242
|
-
np.array(historico[func_idx][f]).reshape(disc_n)
|
|
243
|
-
for f in range(0, len(historico[func_idx]), frames_step)
|
|
244
|
-
]
|
|
245
|
-
z_min = min(Z.min() for Z in todos_frames)
|
|
246
|
-
z_max = max(Z.max() for Z in todos_frames)
|
|
247
|
-
|
|
248
|
-
fig = plt.figure(figsize=(8, 6))
|
|
249
|
-
ax = fig.add_subplot(111, projection='3d')
|
|
250
|
-
|
|
251
|
-
def update(frame):
|
|
252
|
-
ax.clear()
|
|
253
|
-
Z = todos_frames[frame]
|
|
254
|
-
ax.plot_surface(X, Y, Z, cmap=cmap, alpha=alpha)
|
|
255
|
-
ax.set_title(
|
|
256
|
-
f"Evolução 3D de {funcs[func_idx]} - Passo {frame * frames_step}"
|
|
257
|
-
)
|
|
258
|
-
ax.set_xlabel('x')
|
|
259
|
-
ax.set_ylabel('y')
|
|
260
|
-
ax.set_zlabel(str(funcs[func_idx]))
|
|
261
|
-
ax.set_zlim(z_min, z_max)
|
|
262
|
-
ax.view_init(elev=elev, azim=azim)
|
|
263
|
-
|
|
264
|
-
anim = FuncAnimation(fig, update, frames=len(todos_frames),
|
|
265
|
-
interval=interval, blit=False)
|
|
266
|
-
plt.show()
|