pdb-tools 2.6.0__tar.gz → 2.6.1__tar.gz

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  1. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/PKG-INFO +2 -2
  2. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/README.md +1 -1
  3. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdb_tools.egg-info/PKG-INFO +2 -2
  4. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_fromcif.py +2 -3
  5. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/setup.py +1 -1
  6. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/LICENSE +0 -0
  7. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/citation.tex +0 -0
  8. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdb_tools.egg-info/SOURCES.txt +0 -0
  9. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdb_tools.egg-info/dependency_links.txt +0 -0
  10. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdb_tools.egg-info/entry_points.txt +0 -0
  11. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdb_tools.egg-info/top_level.txt +0 -0
  12. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/__init__.py +0 -0
  13. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_b.py +0 -0
  14. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_chain.py +0 -0
  15. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_chainbows.py +0 -0
  16. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_chainxseg.py +0 -0
  17. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_chkensemble.py +0 -0
  18. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_delchain.py +0 -0
  19. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_delelem.py +0 -0
  20. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_delhetatm.py +0 -0
  21. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_delinsertion.py +0 -0
  22. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_delres.py +0 -0
  23. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_delresname.py +0 -0
  24. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_element.py +0 -0
  25. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_fetch.py +0 -0
  26. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_fixinsert.py +0 -0
  27. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_gap.py +0 -0
  28. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_head.py +0 -0
  29. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_intersect.py +0 -0
  30. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_keepcoord.py +0 -0
  31. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_merge.py +0 -0
  32. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_mkensemble.py +0 -0
  33. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_occ.py +0 -0
  34. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_reatom.py +0 -0
  35. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_reres.py +0 -0
  36. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_rplchain.py +0 -0
  37. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_rplresname.py +0 -0
  38. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_seg.py +0 -0
  39. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_segxchain.py +0 -0
  40. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_selaltloc.py +0 -0
  41. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_selatom.py +0 -0
  42. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_selchain.py +0 -0
  43. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_selelem.py +0 -0
  44. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_selhetatm.py +0 -0
  45. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_selmodel.py +0 -0
  46. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_selres.py +0 -0
  47. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_selresname.py +0 -0
  48. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_selseg.py +0 -0
  49. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_shiftres.py +0 -0
  50. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_sort.py +0 -0
  51. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_splitchain.py +0 -0
  52. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_splitmodel.py +0 -0
  53. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_splitseg.py +0 -0
  54. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_tidy.py +0 -0
  55. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_tocif.py +0 -0
  56. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_tofasta.py +0 -0
  57. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_uniqname.py +0 -0
  58. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_validate.py +0 -0
  59. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_wc.py +0 -0
  60. {pdb_tools-2.6.0 → pdb_tools-2.6.1}/setup.cfg +0 -0
{pdb_tools-2.6.0 → pdb_tools-2.6.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pdb-tools
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- Version: 2.6.0
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+ Version: 2.6.1
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  Summary: A swiss army knife for PDB files.
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  Home-page: http://bonvinlab.org/pdb-tools
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  Author: Joao Rodrigues
@@ -38,7 +38,7 @@ Dynamic: summary
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  [![PyPI version](https://badge.fury.io/py/pdb-tools.svg)](https://pypi.python.org/pypi/pdb-tools)
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  [![PyPi Downloads](https://img.shields.io/pypi/dm/pdb-tools.svg)](https://pypi.python.org/pypi/pdb-tools)
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- [![tests](https://github.com/haddocking/pdb-tools/workflows/ci/badge.svg?branch=master)](https://github.com/haddocking/pdb-tools/actions?workflow=ci)
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+ [![ci](https://github.com/haddocking/pdb-tools/actions/workflows/ci.yml/badge.svg)](https://github.com/haddocking/pdb-tools/actions/workflows/ci.yml)
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  [![DOI](https://zenodo.org/badge/27217350.svg)](https://doi.org/10.12688/f1000research.17456.1)
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  A swiss army knife for manipulating and editing PDB files.
{pdb_tools-2.6.0 → pdb_tools-2.6.1}/README.md RENAMED
@@ -2,7 +2,7 @@
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  [![PyPI version](https://badge.fury.io/py/pdb-tools.svg)](https://pypi.python.org/pypi/pdb-tools)
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  [![PyPi Downloads](https://img.shields.io/pypi/dm/pdb-tools.svg)](https://pypi.python.org/pypi/pdb-tools)
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- [![tests](https://github.com/haddocking/pdb-tools/workflows/ci/badge.svg?branch=master)](https://github.com/haddocking/pdb-tools/actions?workflow=ci)
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+ [![ci](https://github.com/haddocking/pdb-tools/actions/workflows/ci.yml/badge.svg)](https://github.com/haddocking/pdb-tools/actions/workflows/ci.yml)
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  [![DOI](https://zenodo.org/badge/27217350.svg)](https://doi.org/10.12688/f1000research.17456.1)
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  A swiss army knife for manipulating and editing PDB files.
{pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdb_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pdb-tools
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- Version: 2.6.0
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+ Version: 2.6.1
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  Summary: A swiss army knife for PDB files.
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  Home-page: http://bonvinlab.org/pdb-tools
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  Author: Joao Rodrigues
@@ -38,7 +38,7 @@ Dynamic: summary
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  [![PyPI version](https://badge.fury.io/py/pdb-tools.svg)](https://pypi.python.org/pypi/pdb-tools)
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  [![PyPi Downloads](https://img.shields.io/pypi/dm/pdb-tools.svg)](https://pypi.python.org/pypi/pdb-tools)
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- [![tests](https://github.com/haddocking/pdb-tools/workflows/ci/badge.svg?branch=master)](https://github.com/haddocking/pdb-tools/actions?workflow=ci)
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+ [![ci](https://github.com/haddocking/pdb-tools/actions/workflows/ci.yml/badge.svg)](https://github.com/haddocking/pdb-tools/actions/workflows/ci.yml)
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  [![DOI](https://zenodo.org/badge/27217350.svg)](https://doi.org/10.12688/f1000research.17456.1)
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  A swiss army knife for manipulating and editing PDB files.
{pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_fromcif.py RENAMED
@@ -176,10 +176,9 @@ def run(fhandle):
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  occ = float(fields[labels.get('_atom_site.occupancy')])
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  bfactor = float(fields[labels.get('_atom_site.B_iso_or_equiv')])
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- charge = fields[labels.get('_atom_site.pdbx_formal_charge')]
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  try:
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- charge = charge
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- except ValueError:
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+ charge = fields[labels.get('_atom_site.pdbx_formal_charge')]
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+ except TypeError:
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  charge = ' '
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  segid = chainid
{pdb_tools-2.6.0 → pdb_tools-2.6.1}/setup.py RENAMED
@@ -30,7 +30,7 @@ bin_py = [
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  setup(
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  name="pdb-tools", # Required
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- version="2.6.0", # Required
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+ version="2.6.1", # Required
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  description="A swiss army knife for PDB files.", # Optional
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  long_description=long_description, # Optional
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  long_description_content_type="text/markdown", # Optional (see note above)
{pdb_tools-2.6.0 → pdb_tools-2.6.1}/LICENSE RENAMED
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{pdb_tools-2.6.0 → pdb_tools-2.6.1}/citation.tex RENAMED
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{pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_b.py RENAMED
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{pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_gap.py RENAMED
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{pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_occ.py RENAMED
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{pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_seg.py RENAMED
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{pdb_tools-2.6.0 → pdb_tools-2.6.1}/pdbtools/pdb_wc.py RENAMED
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{pdb_tools-2.6.0 → pdb_tools-2.6.1}/setup.cfg RENAMED
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