paulikit 0.1.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- paulikit-0.1.0/.github/workflows/paulikit-wheels.yml +160 -0
- paulikit-0.1.0/.gitignore +38 -0
- paulikit-0.1.0/AUTHORS +17 -0
- paulikit-0.1.0/CHANGELOG.md +118 -0
- paulikit-0.1.0/CITATION.cff +65 -0
- paulikit-0.1.0/CODE_OF_CONDUCT.md +136 -0
- paulikit-0.1.0/CONTRIBUTING.md +128 -0
- paulikit-0.1.0/LICENSE +232 -0
- paulikit-0.1.0/Makefile.in +212 -0
- paulikit-0.1.0/PKG-INFO +352 -0
- paulikit-0.1.0/README.md +305 -0
- paulikit-0.1.0/configure +3091 -0
- paulikit-0.1.0/docs/Makefile +23 -0
- paulikit-0.1.0/docs/api/_native.rst +26 -0
- paulikit-0.1.0/docs/api/algorithms.rst +20 -0
- paulikit-0.1.0/docs/api/cli.rst +7 -0
- paulikit-0.1.0/docs/api/hamiltonian.rst +7 -0
- paulikit-0.1.0/docs/api/index.md +12 -0
- paulikit-0.1.0/docs/api/pauli_utils.rst +7 -0
- paulikit-0.1.0/docs/api/testing.rst +12 -0
- paulikit-0.1.0/docs/background.md +118 -0
- paulikit-0.1.0/docs/conf.py +109 -0
- paulikit-0.1.0/docs/index.md +16 -0
- paulikit-0.1.0/docs/installation.md +144 -0
- paulikit-0.1.0/docs/non_hermitian.md +134 -0
- paulikit-0.1.0/docs/package_layout.md +55 -0
- paulikit-0.1.0/docs/theory.md +241 -0
- paulikit-0.1.0/docs/tutorial.md +411 -0
- paulikit-0.1.0/meson.build +24 -0
- paulikit-0.1.0/meson.options +39 -0
- paulikit-0.1.0/pyproject.toml +159 -0
- paulikit-0.1.0/src/paulikit/__init__.py +57 -0
- paulikit-0.1.0/src/paulikit/_native/__init__.py +37 -0
- paulikit-0.1.0/src/paulikit/_native/cache_probe.c +217 -0
- paulikit-0.1.0/src/paulikit/_native/cache_probe.h +110 -0
- paulikit-0.1.0/src/paulikit/_native/cache_probe.pyx +80 -0
- paulikit-0.1.0/src/paulikit/_native/coeffs.c +128 -0
- paulikit-0.1.0/src/paulikit/_native/coeffs.h +131 -0
- paulikit-0.1.0/src/paulikit/_native/coeffs_native.pyx +136 -0
- paulikit-0.1.0/src/paulikit/_native/gather.c +42 -0
- paulikit-0.1.0/src/paulikit/_native/gather.h +82 -0
- paulikit-0.1.0/src/paulikit/_native/gather_native.pyx +89 -0
- paulikit-0.1.0/src/paulikit/_native/hermitian_check.c +33 -0
- paulikit-0.1.0/src/paulikit/_native/hermitian_check.h +71 -0
- paulikit-0.1.0/src/paulikit/_native/hermitian_check_native.pyx +67 -0
- paulikit-0.1.0/src/paulikit/_native/meson.build +291 -0
- paulikit-0.1.0/src/paulikit/_native/pauli_label.c +38 -0
- paulikit-0.1.0/src/paulikit/_native/pauli_label.h +54 -0
- paulikit-0.1.0/src/paulikit/_native/pauli_label_native.pyx +119 -0
- paulikit-0.1.0/src/paulikit/_native/pauli_label_parallel.cpp +38 -0
- paulikit-0.1.0/src/paulikit/_native/pauli_label_parallel.h +37 -0
- paulikit-0.1.0/src/paulikit/_native/test_pauli_label.c +119 -0
- paulikit-0.1.0/src/paulikit/_native/test_pauli_label_parallel.cpp +101 -0
- paulikit-0.1.0/src/paulikit/_native/wht.c +197 -0
- paulikit-0.1.0/src/paulikit/_native/wht.h +140 -0
- paulikit-0.1.0/src/paulikit/_native/wht_native.pyx +92 -0
- paulikit-0.1.0/src/paulikit/algorithms/__init__.py +10 -0
- paulikit-0.1.0/src/paulikit/algorithms/autotune.py +475 -0
- paulikit-0.1.0/src/paulikit/algorithms/fwht.py +3433 -0
- paulikit-0.1.0/src/paulikit/algorithms/meson.build +6 -0
- paulikit-0.1.0/src/paulikit/cli.py +501 -0
- paulikit-0.1.0/src/paulikit/hamiltonian.py +202 -0
- paulikit-0.1.0/src/paulikit/meson.build +11 -0
- paulikit-0.1.0/src/paulikit/pauli_utils.py +71 -0
- paulikit-0.1.0/src/paulikit/testing/__init__.py +7 -0
- paulikit-0.1.0/src/paulikit/testing/fixtures.py +236 -0
- paulikit-0.1.0/src/paulikit/testing/meson.build +5 -0
- paulikit-0.1.0/tests/test_array_yielding.py +285 -0
- paulikit-0.1.0/tests/test_autotune.py +425 -0
- paulikit-0.1.0/tests/test_benchmark_reference.py +86 -0
- paulikit-0.1.0/tests/test_cache_probe.py +76 -0
- paulikit-0.1.0/tests/test_checkpoint_format.py +237 -0
- paulikit-0.1.0/tests/test_chunked_accumulator.py +140 -0
- paulikit-0.1.0/tests/test_cli_parallel.py +151 -0
- paulikit-0.1.0/tests/test_exhaustive_verification.py +163 -0
- paulikit-0.1.0/tests/test_fixtures.py +67 -0
- paulikit-0.1.0/tests/test_fwht.py +341 -0
- paulikit-0.1.0/tests/test_parallel_decompose.py +464 -0
- paulikit-0.1.0/tests/test_progress_marker.py +204 -0
- paulikit-0.1.0/tests/test_sparse_hamiltonian.py +166 -0
- paulikit-0.1.0/tests/test_streaming.py +240 -0
- paulikit-0.1.0/tests/test_threaded_drain.py +213 -0
- paulikit-0.1.0/tests/test_wht_kernel.py +192 -0
- paulikit-0.1.0/verification/FINDINGS.md +155 -0
- paulikit-0.1.0/verification/README.md +87 -0
- paulikit-0.1.0/verification/exhaustive_projection.py +288 -0
- paulikit-0.1.0/verification/results/N100_hermitian_20260828.json +32 -0
- paulikit-0.1.0/verification/results/N150_hermitian_20260828.json +33 -0
- paulikit-0.1.0/verification/results/N20_hermitian_20260828.json +40 -0
- paulikit-0.1.0/verification/results/N20_nonhermitian_20260828.json +40 -0
- paulikit-0.1.0/verification/results/N50_hermitian_20260828.json +33 -0
- paulikit-0.1.0/verification/results/N80_hermitian_20260828.json +32 -0
- paulikit-0.1.0/verification/run_verification.py +265 -0
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# Build manylinux wheels for paulikit (sdist is a separate job in this
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# workflow). Config lives in pyproject.toml under [tool.cibuildwheel]:
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# Linux x86_64 + aarch64, CPython 3.10-3.13, musllinux/Windows/macOS
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# skipped by design.
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#
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# Runs on the GitHub mirror (github.com/beavernets-inc/paulikit). Codeberg
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# (codeberg.org/beavernets/paulikit) is the canonical repository;
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# hosted Forgejo Actions runners are not used for this matrix (need
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# Docker-capable manylinux builds). Manual or tag-triggered only —
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# not on every push. Kernel import gates (wht_native / coeffs_native /
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# gather_native) run inside cibuildwheel's test-command so a wheel
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# without the transform path fails the job.
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#
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# Publish: prefer Trusted Publishing (OIDC). Optional fallback: set
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# environment secret TEST_PYPI_API_TOKEN or PYPI_API_TOKEN (pypi.org
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# "API token" with upload scope) on the matching GitHub Environment.
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# Do not commit tokens.
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name: paulikit wheels
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on:
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push:
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tags:
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- "v*"
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workflow_dispatch:
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inputs:
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publish:
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description: "Upload built artifacts"
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type: choice
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options:
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- none
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- testpypi
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- pypi
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default: none
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jobs:
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build_wheels:
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name: Wheels on ${{ matrix.os }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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os:
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- ubuntu-latest
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- ubuntu-24.04-arm
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steps:
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- uses: actions/checkout@v6
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with:
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persist-credentials: false
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- name: Build wheels
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uses: pypa/cibuildwheel@v4.2.1
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with:
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package-dir: .
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output-dir: wheelhouse
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- uses: actions/upload-artifact@v4
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with:
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name: paulikit-wheels-${{ matrix.os }}-${{ strategy.job-index }}
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path: ./wheelhouse/*.whl
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build_sdist:
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name: Source distribution
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v6
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with:
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persist-credentials: false
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- uses: actions/setup-python@v6
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with:
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python-version: "3.12"
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- name: Build sdist
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run: |
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python -m pip install --upgrade build
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python -m build --sdist --outdir dist
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run: |
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import tarfile
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assert len(sdists) == 1, sdists
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names = tarfile.open(sdists[0]).getnames()
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banned = ("plans/", "profiling/", ".worktrees/", "PYPI_RELEASE")
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assert not hits, f"sdist carries private/research paths: {hits[:20]}"
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print(f"ok: {sdists[0].name} ({len(names)} entries)")
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path: dist/*.tar.gz
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name: Publish package
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needs: [build_wheels, build_sdist]
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if: >
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(github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v'))
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|| (github.event_name == 'workflow_dispatch'
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&& inputs.publish != 'none')
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runs-on: ubuntu-latest
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environment:
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name: ${{ (github.event_name == 'workflow_dispatch' && inputs.publish == 'testpypi') && 'testpypi' || 'pypi' }}
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url: ${{ (github.event_name == 'workflow_dispatch' && inputs.publish == 'testpypi') && 'https://test.pypi.org/project/paulikit/' || 'https://pypi.org/project/paulikit/' }}
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permissions:
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id-token: write
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env:
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TEST_PYPI_API_TOKEN: ${{ secrets.TEST_PYPI_API_TOKEN }}
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PYPI_API_TOKEN: ${{ secrets.PYPI_API_TOKEN }}
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steps:
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- uses: actions/download-artifact@v4
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with:
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pattern: paulikit-*
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merge-multiple: true
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path: dist
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run: ls -la dist
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if: github.event_name == 'workflow_dispatch' && inputs.publish == 'testpypi' && env.TEST_PYPI_API_TOKEN == ''
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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repository-url: https://test.pypi.org/legacy/
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packages-dir: dist
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if: github.event_name == 'workflow_dispatch' && inputs.publish == 'testpypi' && env.TEST_PYPI_API_TOKEN != ''
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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repository-url: https://test.pypi.org/legacy/
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packages-dir: dist
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if: >
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&& env.PYPI_API_TOKEN == ''
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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if: >
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&& env.PYPI_API_TOKEN != ''
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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# Python bytecode and caches
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__pycache__/
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*.py[cod]
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# Virtual environments
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.venv/
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venv/
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build/
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dist/
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*.egg-info/
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.mesonpy-*/
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*.so
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# Generated by ./configure; Makefile.in is the source template.
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/Makefile
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config.log
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config.status
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# Test and tooling caches
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# Sphinx output
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docs/_build/
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# Local agent plans/specs and git worktrees — never ship these.
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plans/
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.worktrees/
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# Lockfiles are deliberately not tracked: this is a library, not an
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# application, so pinning a resolved dependency set here would
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# constrain downstreams without benefiting them.
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uv.lock
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poetry.lock
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paulikit-0.1.0/AUTHORS
ADDED
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paulikit was written by:
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Mohammadreza Khellat
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Mohammad Masoumi
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Saman Nasouri
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Soroush Nasouri
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all at Beavernets Technologies.
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The citation order, and the metadata to use when citing this software
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in published work, are in CITATION.cff. That file is the authoritative
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record; this one exists because the GNU Coding Standards expect an
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AUTHORS file, and because a reader looking for "who wrote this" should
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not have to know what CITATION.cff is.
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Contributors are credited in the git history. Substantial ongoing
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# Changelog
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All notable changes to this project are documented here.
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The format follows [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
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and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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While the version is 0.x, the public API may change between minor
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versions; see the README's Status section.
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## [Unreleased]
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## [0.1.0] - 2026-09-26
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First public release (PyPI target). Package contents were prepared
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2026-09-10; this dated entry is the freeze for the first tagged /
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uploaded artifacts.
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### Added
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- **Pauli decomposition by fast Walsh-Hadamard transform.**
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`paulikit.algorithms.fwht` decomposes any $2^n \times 2^n$ complex matrix
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into its Pauli-basis coefficients in $O(n \cdot 4^n)$. Hermitian and
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non-Hermitian input take the same transform; `assume_hermitian=True`
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(the default) returns real coefficients and verifies the input
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really is Hermitian rather than assuming it.
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- **Bounded memory.** The active-x set is chunked and each chunk is
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thresholded and emitted before the next is computed, so peak
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resident memory is set by `chunk_size` rather than by the size of
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the result. Sparse input is kept sparse throughout.
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- **Streaming entry points.** `fwht_pauli_terms_iter` and
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`parallel_decompose_arrays` yield per chunk, so a caller can consume
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and discard results that would not fit in memory if accumulated.
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- **Multi-core execution.** `parallel_decompose` and
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`parallel_decompose_arrays` distribute independent chunks across a
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process pool or a thread pool. Worker count is taken from the CPUs
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actually available to the process rather than from `os.cpu_count()`,
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so a cgroup- or cpuset-restricted machine is not oversubscribed.
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Threaded drain (`executor="thread"` / `"auto"`) uses physical-core
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pinning, capacity-weighted slices, work-stealing, and optional eager
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thread spin-up.
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- **Checkpoint and restart.** A binary chunk-framed checkpoint format
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cheap enough to leave permanently enabled. Frames carry their own
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chunk index, so completed work replays on resume regardless of the
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order a pool returns it in, and a torn tail means exactly "that
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chunk was not recorded".
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- **Optional compiled kernels.** Under three meson options:
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`wht_kernel` (Walsh–Hadamard butterfly, fused coefficients, dense
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gather, Hermiticity check, with optional x86-64-v3 twins), `native`
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(Pauli label kernel with a oneTBB-parallel variant), and
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`cache_probe` (empirical cache-latency probe). All are optional: the
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package is correct and installable with no C toolchain, and reports
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once when a fallback path is taken. Manylinux wheels ship
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`wht_kernel` (+ `cache_probe`) with `-Dnative=disabled` (no oneTBB
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in the wheel image); label generation falls back to pure Python.
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- **Cache-aware auto-tuning.** `paulikit.algorithms.autotune` sizes
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chunks against measured cache boundaries, interpolating between
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measured anchor points rather than applying a closed-form fit.
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- **Command-line interface.** `paulikit decompose`, `paulikit
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benchmark` and `paulikit regenerate-fixtures`.
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- **Exhaustive verification.** Every term of a decomposition checked
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individually against an independently derived projection oracle -
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not sampled - up to 91,652,096 terms at 14 qubits, Hermitian and
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non-Hermitian. Artifacts and method under `verification/`.
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- **Test suite.** 323 default tests (8 further slow benchmark
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comparisons excluded by default).
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- **Documentation.** Installation, tutorial, theory, background,
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non-Hermitian operators, annotated source tree, and an API
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reference built from the docstrings.
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- GitHub Actions workflow (`.github/workflows/paulikit-wheels.yml` on
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the GitHub mirror,
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[github.com/beavernets-inc/paulikit](https://github.com/beavernets-inc/paulikit))
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that builds manylinux wheels (x86_64 / aarch64, CPython 3.10–3.13)
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and an sdist on tag / manual dispatch, with an optional Trusted
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Publishing upload job. Codeberg remains the canonical repository;
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hosted Forgejo runners are not used for the manylinux matrix.
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### Changed
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- README Usage leads with the measured sparse/dense fastest paths;
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Sphinx tutorial, installation, and native docs match the multi-kernel
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surface; `--chunk-size` help no longer claims auto-tuning is absent
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from the library APIs.
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- GitHub mirror moved to
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[beavernets-inc/paulikit](https://github.com/beavernets-inc/paulikit);
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install docs lead with `pip install paulikit` for the first PyPI
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upload.
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### Fixed
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- `make check` no longer dumps expected autotune/fork warnings from
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intentional no-probe and process-pool tests.
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### Removed
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- Stale Status/CHANGELOG claim of an unexplained 14-to-15 qubit
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parallel-efficiency step under the process-pool drain.
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### Known limitations
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- Linux manylinux wheels ship `wht_kernel` (+ `cache_probe`) but omit
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`pauli_label_native` (oneTBB). macOS / Windows / musllinux use the
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sdist. Install with `pip install paulikit`.
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- CPU pinning and topology detection are Linux-only, with a documented
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fallback elsewhere; the non-Linux paths are not exercised in CI.
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[Unreleased]: https://codeberg.org/beavernets/paulikit/compare/v0.1.0...HEAD
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[0.1.0]: https://codeberg.org/beavernets/paulikit/releases/tag/v0.1.0
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cff-version: 1.2.0
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title: >-
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paulikit: memory-bounded, checkpointable Pauli decomposition of
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complex matrices
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message: >-
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If you use this software, please cite it using the metadata in this
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file.
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type: software
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# Order is the intended citation order, with the corresponding author
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# first. These are the people credited when the SOFTWARE is cited,
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# which need not be identical to the author list of any paper about
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# it - keep the two in step deliberately rather than by accident.
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authors:
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- given-names: Mohammadreza
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family-names: Khellat
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affiliation: Beavernets Technologies
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- given-names: Mohammad
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family-names: Masoumi
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affiliation: Beavernets Technologies
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- given-names: Saman
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family-names: Nasouri
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affiliation: Beavernets Technologies
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- given-names: Soroush
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family-names: Nasouri
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affiliation: Beavernets Technologies
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repository-code: "https://codeberg.org/beavernets/paulikit"
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# Wheel CI / GitHub mirror (not the citation canonical URL):
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# https://github.com/beavernets-inc/paulikit
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# Project contact rather than any individual's address: it survives
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# people changing roles, and a CITATION.cff is archived permanently
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# alongside the DOI.
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contact:
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- name: paulikit developers
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email: dev@beavernets.com
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abstract: >-
|
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paulikit computes the exact Pauli decomposition of an arbitrary
|
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+
complex matrix via the fast Walsh-Hadamard transform. Hermitian and
|
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non-Hermitian input are equally supported and take the same
|
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+
transform; declaring input Hermitian additionally yields real
|
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coefficients and checks that assumption rather than trusting it.
|
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Both are verified against an independent projection oracle, and at
|
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small sizes against PennyLane.
|
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The transform itself is established practice; the contribution here
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is making it usable at scale - a streaming formulation whose peak
|
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resident memory is bounded independently of the term count,
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multi-core execution over independent chunks, a chunk-framed binary
|
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checkpoint format cheap enough to leave permanently enabled,
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cache-aware automatic chunk sizing, and exhaustive per-term
|
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verification against an independent projection oracle at up to
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91,652,096 terms.
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keywords:
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- Pauli decomposition
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- fast Walsh-Hadamard transform
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- quantum Hamiltonian simulation
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- linear combination of unitaries
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- memory-bounded algorithms
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- parallel computing
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- scientific Python
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- checkpoint and restart
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license: GPL-3.0-or-later
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version: 0.1.0
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# NOTE: no DOI yet. This is added on the first archived release
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# (Zenodo), and the version above must be bumped to match the tag that
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# is archived. A CITATION.cff claiming a version that was never
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# released is worse than none.
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# Contributor Covenant Code of Conduct
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## Our Pledge
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We as members, contributors, and leaders pledge to make participation
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in our community a harassment-free experience for everyone, regardless
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of age, body size, visible or invisible disability, ethnicity, sex
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characteristics, gender identity and expression, level of experience,
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education, socio-economic status, nationality, personal appearance,
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race, caste, color, religion, or sexual identity and orientation.
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We pledge to act and interact in ways that contribute to an open,
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welcoming, diverse, inclusive, and healthy community.
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## Our Standards
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Examples of behavior that contributes to a positive environment for
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our community include:
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* Demonstrating empathy and kindness toward other people
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* Being respectful of differing opinions, viewpoints, and experiences
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* Giving and gracefully accepting constructive feedback
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* Accepting responsibility and apologizing to those affected by our
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mistakes, and learning from the experience
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* Focusing on what is best not just for us as individuals, but for the
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overall community
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Examples of unacceptable behavior include:
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* The use of sexualized language or imagery, and sexual attention or
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advances of any kind
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* Trolling, insulting or derogatory comments, and personal or
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political attacks
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* Public or private harassment
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* Publishing others' private information, such as a physical or email
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address, without their explicit permission
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* Other conduct which could reasonably be considered inappropriate in
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a professional setting
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## Enforcement Responsibilities
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Community leaders are responsible for clarifying and enforcing our
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standards of acceptable behavior and will take appropriate and fair
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corrective action in response to any behavior that they deem
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inappropriate, threatening, offensive, or harmful.
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Community leaders have the right and responsibility to remove, edit,
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or reject comments, commits, code, wiki edits, issues, and other
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contributions that are not aligned to this Code of Conduct, and will
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communicate reasons for moderation decisions when appropriate.
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## Scope
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This Code of Conduct applies within all community spaces, and also
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applies when an individual is officially representing the community in
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public spaces. Examples of representing our community include using an
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official email address, posting via an official social media account,
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or acting as an appointed representative at an online or offline
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event.
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## Enforcement
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Instances of abusive, harassing, or otherwise unacceptable behavior
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may be reported to the community leaders responsible for enforcement
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at dev@beavernets.com.
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All complaints will be reviewed and investigated promptly and fairly.
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All community leaders are obligated to respect the privacy and
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security of the reporter of any incident.
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## Enforcement Guidelines
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Community leaders will follow these Community Impact Guidelines in
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determining the consequences for any action they deem in violation of
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this Code of Conduct:
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### 1. Correction
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**Community Impact**: Use of inappropriate language or other behavior
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deemed unprofessional or unwelcome in the community.
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**Consequence**: A private, written warning from community leaders,
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providing clarity around the nature of the violation and an
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explanation of why the behavior was inappropriate. A public apology
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may be requested.
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### 2. Warning
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**Community Impact**: A violation through a single incident or series
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of actions.
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**Consequence**: A warning with consequences for continued behavior.
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No interaction with the people involved, including unsolicited
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interaction with those enforcing the Code of Conduct, for a specified
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period of time. This includes avoiding interactions in community
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spaces as well as external channels like social media. Violating these
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terms may lead to a temporary or permanent ban.
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### 3. Temporary Ban
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including sustained inappropriate behavior.
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**Consequence**: A temporary ban from any sort of interaction or
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public communication with the community for a specified period of
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time. No public or private interaction with the people involved,
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including unsolicited interaction with those enforcing the Code of
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Conduct, is allowed during this period. Violating these terms may lead
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to a permanent ban.
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### 4. Permanent Ban
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**Community Impact**: Demonstrating a pattern of violation of
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community standards, including sustained inappropriate behavior,
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harassment of an individual, or aggression toward or disparagement of
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classes of individuals.
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**Consequence**: A permanent ban from any sort of public interaction
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within the community.
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## Attribution
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This Code of Conduct is adapted from the [Contributor Covenant][
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homepage], version 2.1, available at
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https://www.contributor-covenant.org/version/2/1/code_of_conduct.html.
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Community Impact Guidelines were inspired by
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[Mozilla's code of conduct enforcement ladder][Mozilla CoC].
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For answers to common questions about this code of conduct, see the
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FAQ at https://www.contributor-covenant.org/faq. Translations are
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[Mozilla CoC]: https://github.com/mozilla/diversity
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# Contributing to paulikit
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Thank you for your interest. This document covers how to build the
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package, how to run its tests, and what a change is expected to carry
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with it.
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## Where the project lives
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**Canonical repository:**
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[codeberg.org/beavernets/paulikit](https://codeberg.org/beavernets/paulikit)
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(`origin`).
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**Mirror:**
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[github.com/beavernets-inc/paulikit](https://github.com/beavernets-inc/paulikit)
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(`github`).
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Issues and pull requests are welcome at either. Prefer Codeberg when
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you have a choice; the GitHub remote exists so Linux wheel CI can use
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GitHub-hosted runners with Docker (manylinux), which Codeberg's
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hosted Forgejo Actions runners are not sized for.
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## Building
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The package uses [meson-python](https://mesonbuild.com/meson-python/),
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the same build backend as NumPy and SciPy. A `configure` script wraps
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the setup:
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```bash
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./configure # creates a venv, reports what the toolchain offers
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make # editable install with the correct sequencing
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make check # run the test suite
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make docs # Sphinx HTML under docs/_build/html
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```
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`./configure` prints an itemised capability report - compiler, Cython,
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oneTBB, cache hierarchy, NumPy's BLAS backend - and then generates a
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Makefile with the standard GNU targets. Run `./configure --help` for
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the options.
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If you would rather not use it, `docs/installation.md` gives the
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manual sequence. The one thing that matters is `--no-build-isolation`
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on editable installs; without it NumPy's include path is baked in from
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a throwaway environment and goes stale on the next rebuild.
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## Running the tests
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```bash
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make check # or: pytest
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make test-native # the standalone C and C++ kernel self-tests
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```
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`pyproject.toml` sets `addopts = "-m 'not slow'"`, so the eight
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benchmark comparisons are skipped by default. To run them, override
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that rather than adding to it:
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```bash
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pytest -o addopts="" -m slow
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```
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The suite passes with no compiled extensions and no development
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dependencies installed - a few tests skip in that configuration, which
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is deliberate. That is the same environment the pure-Python fallback
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exists to serve, so it needs to stay green there.
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## Wheels and releases
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```bash
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pip install paulikit
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```
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Manylinux wheels (x86_64 and aarch64, CPython 3.10–3.13) and the sdist
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are built by `.github/workflows/paulikit-wheels.yml` on the GitHub
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mirror
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([github.com/beavernets-inc/paulikit](https://github.com/beavernets-inc/paulikit)):
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push a `v*` tag, or run the workflow manually. The job fails
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if `wht_native` / `coeffs_native` / `gather_native` are missing from
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the wheel. musllinux, macOS, and Windows are intentionally not wheel
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targets; those platforms use the sdist and documented fallbacks.
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Wheels omit `pauli_label_native` (oneTBB).
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Codeberg remains the source of truth for the tree. Do not expect the
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same cibuildwheel matrix to run on Codeberg's hosted Actions without
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a self-hosted runner that can drive Docker.
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## What a change should carry
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- **A test.** A bug fix should come with a test that fails without it.
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A new code path should come with tests that cover it.
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- **The reason, not just the change.** Comments and docstrings here
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record why something is the way it is, including approaches that
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were measured and rejected. That is the most expensive information
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in the codebase and the easiest to lose.
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- **A measurement, if the claim is about performance.** Wall-clock
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time on a laptop is not evidence: CPU frequency scaling alone moves
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it by a factor of two. Prefer instruction and cycle counts
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(`perf stat -e instructions:u,cycles:u`), report the problem size,
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and replicate before quoting a ratio.
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- **Documentation, if behaviour changed.** Including the docstring, so
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the API reference stays correct. User-visible behaviour also updates
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the README and/or CHANGELOG `[Unreleased]` section.
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- **Atomic commits.** One reviewable design step per commit (see the
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repository history). Prefer a few closely related files over a
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mega-commit that mixes engine, UI, and docs.
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## Style
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`ruff` is configured in `pyproject.toml` (line length 92) and is part
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of the `dev` extra. Most of the codebase is wrapped tighter than that,
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at 79, and new code should follow the file it lives in.
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Commit messages follow the GNU convention: a short imperative subject
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line, a blank line, then a body explaining *why* the change is being
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made, wrapped at 72 characters. The existing history is the reference.
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## Reporting a bug
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Please include the paulikit version, the Python version, the operating
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system, whether the compiled extensions were built (`./configure`
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reports this), and the smallest input that reproduces the problem.
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For a decomposition that produces a wrong result, the most useful
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report includes the operator - or the code that builds it - and the
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term that disagrees.
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## Licence
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paulikit is GPL-3.0-or-later. By contributing you agree that your
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contribution is licensed under the same terms.
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