pathling 8.0.0.dev3__tar.gz → 8.0.0.dev5__tar.gz

{pathling-8.0.0.dev3/pathling.egg-info → pathling-8.0.0.dev5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pathling
-Version: 8.0.0.dev3
+Version: 8.0.0.dev5
 Summary: Python API for Pathling
 Home-page: https://github.com/aehrc/pathling
 Author: Australian e-Health Research Centre, CSIRO

pathling-8.0.0.dev5/examples/bulk.py

@@ -0,0 +1,149 @@
+#  Copyright 2025 Commonwealth Scientific and Industrial Research
+#  Organisation (CSIRO) ABN 41 687 119 230.
+# 
+#  Licensed under the Apache License, Version 2.0 (the "License");
+#  you may not use this file except in compliance with the License.
+#  You may obtain a copy of the License at
+# 
+#      http://www.apache.org/licenses/LICENSE-2.0
+# 
+#  Unless required by applicable law or agreed to in writing, software
+#  distributed under the License is distributed on an "AS IS" BASIS,
+#  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+#  See the License for the specific language governing permissions and
+#  limitations under the License.
+
+import os
+import tempfile
+from datetime import datetime, timezone
+
+from pathling import PathlingContext
+
+jwk = """
+{
+  "kty": "RSA",
+  "alg": "RS384",
+  "n": "llps-ufRYIVplRdtF2FB1xn5iCuojOyHmCmkLsMLU2zsUNcpwxlFUmv9xQRHTArfGm_vRkKjtx4dsW8LMG45EvDK_a6TmLF5H5hDlCqr0aXuInpN-c3f6f9d0zRtBCc18IKHL_IBskoaHGK4LVdQypIPcLqMiKkPFXI-NRwtJLUpQt6NH_p8vW0fiIRbkdC1t2pSrPX0307et38IE_vv8_RZm3CAKef2pnbWzRUBleeQybqaR28VNNallixegt1Sh5ShQLfQvA0QmrST25Kzs5K0d_6eAKl4xPDp1Q_dC1N4mygMZAkbRXKdq49Pg9C-56pbzEmvOYiM_CtMWkzr9w",
+  "e": "AQAB",
+  "d": "By9zHdqOSwqVLSbdc8yWFO2M21Ea0QFMyZzT19hCZk5CTOq7eDNw-KtoiU3XCm9KkjzfNoBgypOJ37zqz_m0iI8xZEY_j4CLxVLFiAMyCubfJo6pw1JvbQNjPIC45QXqsf_K7iOmqRqZfNnK63_MwKGSU1TW-oD505COIIOkNKjQ7KpIOm56EfyH2_cPUfmlHsBCRGy6eQ2M8cSK-uxXchSrNqt46nD8ArCE8qtrGJn1zJTgWOkH2lS73uzkc_P6rGg3IdiAbmPl4HWU-PlJ2jwykFbbXhnzL3Tpruc8okR_cda5u7KSa8dfV5WPjnygTxPHNt5_iuszPKxa0X9nwQ",
+  "p": "1DcRbY_DevTMMni3WynbKGm-MXmnH7NMU-4IU1hdegZfrStoBC2DngP77JILRO_TApaMPiAkIpxIpgvovnWKtCZ3-2BXDWnd4x_Ews3BUUVzCjvxAatLTiSq_lZTAL93Htqf3FQPa86Q2x4lyvJ-rFWBfpONzMGr-5g9ut1sGbk",
+  "q": "tV_kQ3ggaBSYRkckrpWnKJI3-uREyZVI_-PTK8kUS43Glz12sxVpYIIRqt57XtArkpHG9_YjUxj_ROF_LjSFaGbCxmccPqu9tHr7JIsuVWQlz8ooxXNW3lURMCtKd3k2xm9FhoFmtncP7nLbCfVaBIlTLhaXZXVZSSUv-vDDSy8",
+  "dp": "dVk-OeeVoRhdEkvOmIq8tcxDb_hlghIT0xV9ZRkoF6IOpiOqkSTZ8zcgx-C6epRjirrVMkVzte_V_Hv5Z9h3qsba8haEDNbN7BpVI6PDkr1kr_QVgWbHbZ65L4tsuq0lodojLCMPo_3F_GTfYSpXAdUGlofhkahHAgldmUd3z4E",
+  "dq": "O6MdHiYombBz5V_NKu6gORHjAEcAazv_9cvGirYiSzmB3AbkubvHm2kJQCLJdAKE4Tu3rZ6sPM2SWea_d8TjPNHVJ4GN4vl7dhWd8IUnJgK5ABrbzxi-rnpQHYOOh7w-i37Y4II58LMzdNclOKAJCkbRJ-1buIueYROuNBfoTxc",
+  "qi": "CPlT4vGuJbV-WMLIRL4c-VW0H0fwRUljqvv-_nNDQyZ98uFlXYLtmQS2h3VX4WjK1UR8Ca3m9110JNe8Va_7Tepuk13p4CyMG0ccGojzl50fvfrINj1zN6jz0lRI4cAPWdfGwgEs0tpvtW1saVrg9y89XefEx8Iq2Z0bLrlKGrU",
+  "key_ops": [
+    "sign"
+  ],
+  "ext": true,
+  "kid": "b2979595c62deb396306ba3edbdfb4a0"
+}
+"""
+
+client_id = "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCIsImtpZCI6InJlZ2lzdHJhdGlvbi10b2tlbiJ9.eyJqd2tzIjp7ImtleXMiOlt7Imt0eSI6IlJTQSIsImFsZyI6IlJTMzg0IiwibiI6ImxscHMtdWZSWUlWcGxSZHRGMkZCMXhuNWlDdW9qT3lIbUNta0xzTUxVMnpzVU5jcHd4bEZVbXY5eFFSSFRBcmZHbV92UmtLanR4NGRzVzhMTUc0NUV2REtfYTZUbUxGNUg1aERsQ3FyMGFYdUlucE4tYzNmNmY5ZDB6UnRCQ2MxOElLSExfSUJza29hSEdLNExWZFF5cElQY0xxTWlLa1BGWEktTlJ3dEpMVXBRdDZOSF9wOHZXMGZpSVJia2RDMXQycFNyUFgwMzA3ZXQzOElFX3Z2OF9SWm0zQ0FLZWYycG5iV3pSVUJsZWVReWJxYVIyOFZOTmFsbGl4ZWd0MVNoNVNoUUxmUXZBMFFtclNUMjVLenM1SzBkXzZlQUtsNHhQRHAxUV9kQzFONG15Z01aQWtiUlhLZHE0OVBnOUMtNTZwYnpFbXZPWWlNX0N0TVdrenI5dyIsImUiOiJBUUFCIiwia2V5X29wcyI6WyJ2ZXJpZnkiXSwiZXh0Ijp0cnVlLCJraWQiOiJiMjk3OTU5NWM2MmRlYjM5NjMwNmJhM2VkYmRmYjRhMCJ9LHsia3R5IjoiUlNBIiwiYWxnIjoiUlMzODQiLCJuIjoibGxwcy11ZlJZSVZwbFJkdEYyRkIxeG41aUN1b2pPeUhtQ21rTHNNTFUyenNVTmNwd3hsRlVtdjl4UVJIVEFyZkdtX3ZSa0tqdHg0ZHNXOExNRzQ1RXZES19hNlRtTEY1SDVoRGxDcXIwYVh1SW5wTi1jM2Y2ZjlkMHpSdEJDYzE4SUtITF9JQnNrb2FIR0s0TFZkUXlwSVBjTHFNaUtrUEZYSS1OUnd0SkxVcFF0Nk5IX3A4dlcwZmlJUmJrZEMxdDJwU3JQWDAzMDdldDM4SUVfdnY4X1JabTNDQUtlZjJwbmJXelJVQmxlZVF5YnFhUjI4Vk5OYWxsaXhlZ3QxU2g1U2hRTGZRdkEwUW1yU1QyNUt6czVLMGRfNmVBS2w0eFBEcDFRX2RDMU40bXlnTVpBa2JSWEtkcTQ5UGc5Qy01NnBiekVtdk9ZaU1fQ3RNV2t6cjl3IiwiZSI6IkFRQUIiLCJkIjoiQnk5ekhkcU9Td3FWTFNiZGM4eVdGTzJNMjFFYTBRRk15WnpUMTloQ1prNUNUT3E3ZUROdy1LdG9pVTNYQ205S2tqemZOb0JneXBPSjM3enF6X20waUk4eFpFWV9qNENMeFZMRmlBTXlDdWJmSm82cHcxSnZiUU5qUElDNDVRWHFzZl9LN2lPbXFScVpmTm5LNjNfTXdLR1NVMVRXLW9ENTA1Q09JSU9rTktqUTdLcElPbTU2RWZ5SDJfY1BVZm1sSHNCQ1JHeTZlUTJNOGNTSy11eFhjaFNyTnF0NDZuRDhBckNFOHF0ckdKbjF6SlRnV09rSDJsUzczdXprY19QNnJHZzNJZGlBYm1QbDRIV1UtUGxKMmp3eWtGYmJYaG56TDNUcHJ1Yzhva1JfY2RhNXU3S1NhOGRmVjVXUGpueWdUeFBITnQ1X2l1c3pQS3hhMFg5bndRIiwicCI6IjFEY1JiWV9EZXZUTU1uaTNXeW5iS0dtLU1YbW5IN05NVS00SVUxaGRlZ1pmclN0b0JDMkRuZ1A3N0pJTFJPX1RBcGFNUGlBa0lweElwZ3Zvdm5XS3RDWjMtMkJYRFduZDR4X0V3czNCVVVWekNqdnhBYXRMVGlTcV9sWlRBTDkzSHRxZjNGUVBhODZRMng0bHl2Si1yRldCZnBPTnpNR3ItNWc5dXQxc0diayIsInEiOiJ0Vl9rUTNnZ2FCU1lSa2NrcnBXbktKSTMtdVJFeVpWSV8tUFRLOGtVUzQzR2x6MTJzeFZwWUlJUnF0NTdYdEFya3BIRzlfWWpVeGpfUk9GX0xqU0ZhR2JDeG1jY1BxdTl0SHI3SklzdVZXUWx6OG9veFhOVzNsVVJNQ3RLZDNrMnhtOUZob0ZtdG5jUDduTGJDZlZhQklsVExoYVhaWFZaU1NVdi12RERTeTgiLCJkcCI6ImRWay1PZWVWb1JoZEVrdk9tSXE4dGN4RGJfaGxnaElUMHhWOVpSa29GNklPcGlPcWtTVFo4emNneC1DNmVwUmppcnJWTWtWenRlX1ZfSHY1WjloM3FzYmE4aGFFRE5iTjdCcFZJNlBEa3Ixa3JfUVZnV2JIYlo2NUw0dHN1cTBsb2RvakxDTVBvXzNGX0dUZllTcFhBZFVHbG9maGthaEhBZ2xkbVVkM3o0RSIsImRxIjoiTzZNZEhpWW9tYkJ6NVZfTkt1NmdPUkhqQUVjQWF6dl85Y3ZHaXJZaVN6bUIzQWJrdWJ2SG0ya0pRQ0xKZEFLRTRUdTNyWjZzUE0yU1dlYV9kOFRqUE5IVko0R040dmw3ZGhXZDhJVW5KZ0s1QUJyYnp4aS1ybnBRSFlPT2g3dy1pMzdZNElJNThMTXpkTmNsT0tBSkNrYlJKLTFidUl1ZVlST3VOQmZvVHhjIiwicWkiOiJDUGxUNHZHdUpiVi1XTUxJUkw0Yy1WVzBIMGZ3UlVsanF2di1fbk5EUXlaOTh1RmxYWUx0bVFTMmgzVlg0V2pLMVVSOENhM205MTEwSk5lOFZhXzdUZXB1azEzcDRDeU1HMGNjR29qemw1MGZ2ZnJJTmoxek42anowbFJJNGNBUFdkZkd3Z0VzMHRwdnRXMXNhVnJnOXk4OVhlZkV4OElxMlowYkxybEtHclUiLCJrZXlfb3BzIjpbInNpZ24iXSwiZXh0Ijp0cnVlLCJraWQiOiJiMjk3OTU5NWM2MmRlYjM5NjMwNmJhM2VkYmRmYjRhMCJ9XX0sImFjY2Vzc1Rva2Vuc0V4cGlyZUluIjoxNSwiaWF0IjoxNzQwMzY3MDU0fQ.avoHoKI9g_2fmoRxZB0QnscRgEqb9xHip9CU_f-2U1I"
+
+
+def test_bulk_exports():
+    # Initialize PathlingContext.
+    pc = PathlingContext.create()
+
+    # Base parameters from the demo server
+    fhir_server = "https://bulk-data.smarthealthit.org/fhir"
+    output_base = os.path.join(tempfile.gettempdir(), "bulk_export_test")
+    
+    if os.path.exists(output_base):
+        import shutil
+        shutil.rmtree(output_base)
+    os.makedirs(output_base)
+
+    # Test 1: System level export with all parameters.
+    print("\n=== Testing system level export with all parameters ===")
+    pc.read.bulk(
+        fhir_endpoint_url=fhir_server,
+        output_dir=f"{output_base}/system_detailed",
+        output_format="application/fhir+ndjson",
+        since=datetime(2015, 1, 1, tzinfo=timezone.utc),
+        types=["Patient", "Observation"],
+        elements=["id", "status"],
+        include_associated_data=["LatestProvenanceResources"],
+        type_filters=["Patient?status=active"],
+        output_extension="ndjson",
+        timeout=3600,
+        auth_config={
+            "enabled": True,
+            "client_id": client_id,
+            "private_key_jwk": jwk,
+            "use_smart": True,
+            "use_form_for_basic_auth": False,
+            "scope": "system/*.read",
+            "token_expiry_tolerance": 30
+        }
+    )
+    print("System export completed successfully")
+
+    # Test 2: Group level export with minimal parameters.
+    print("\n=== Testing group level export with minimal parameters ===")
+    pc.read.bulk(
+        fhir_endpoint_url=fhir_server,
+        output_dir=f"{output_base}/group_basic",
+        group_id="BMCHealthNet"
+    )
+    print("Group export completed successfully")
+
+    # Test 3: Group level export with all parameters.
+    print("\n=== Testing group level export with all parameters ===")
+    pc.read.bulk(
+        fhir_endpoint_url=fhir_server,
+        output_dir=f"{output_base}/group_detailed",
+        group_id="BMCHealthNet",
+        output_format="application/fhir+ndjson",
+        since=datetime(2015, 1, 1, tzinfo=timezone.utc),
+        types=["Patient", "Condition", "Observation"],
+        elements=["id", "status"],
+        include_associated_data=["LatestProvenanceResources"],
+        type_filters=["Patient?status=active"],
+        output_extension="ndjson",
+        timeout=1800,
+        max_concurrent_downloads=8
+    )
+    print("Group export completed successfully")
+
+    # Test 4: Patient level export with minimal parameters.
+    print("\n=== Testing patient level export with minimal parameters ===")
+    pc.read.bulk(
+        fhir_endpoint_url=fhir_server,
+        output_dir=f"{output_base}/patient_basic",
+        patients=[
+            "Patient/58c297c4-d684-4677-8024-01131d93835e",
+            "Patient/118616a4-f0b2-411f-8050-39d5d27c738c"
+        ]
+    )
+    print("Patient export completed successfully")
+
+    # Test 5: Patient level export with all parameters.
+    print("\n=== Testing patient level export with all parameters ===")
+    pc.read.bulk(
+        fhir_endpoint_url=fhir_server,
+        output_dir=f"{output_base}/patient_detailed",
+        patients=[
+            "Patient/58c297c4-d684-4677-8024-01131d93835e",
+            "Patient/118616a4-f0b2-411f-8050-39d5d27c738c",
+            "Patient/21fba439-ca79-411f-a081-37a432a78f3a"
+        ],
+        output_format="application/fhir+ndjson",
+        since=datetime(2020, 1, 1, tzinfo=timezone.utc),
+        types=["Observation", "MedicationRequest"],
+        elements=["id", "status", "code"],
+        include_associated_data=["LatestProvenanceResources"],
+        type_filters=["Observation?category=vital-signs"],
+        output_extension="ndjson",
+        timeout=2400,
+        max_concurrent_downloads=3
+    )
+    print("Patient export completed successfully")
+
+    print("\nAll bulk exports completed successfully!")
+    print(f"Output written to: {output_base}")
+
+
+if __name__ == "__main__":
+    test_bulk_exports()

{pathling-8.0.0.dev3 → pathling-8.0.0.dev5}/pathling/_version.py

@@ -2,7 +2,7 @@
 # Auto generated from POM project version.
 # Please do not modify.
 #
-__version__="8.0.0.dev3"
+__version__="8.0.0.dev5"
 __java_version__="8.0.0-SNAPSHOT"
 __scala_version__="2.12"
 __delta_version__="3.3.2"

{pathling-8.0.0.dev3 → pathling-8.0.0.dev5}/pathling/datasource.py

@@ -57,7 +57,7 @@ class DataSource(SparkConversionsMixin):
         
         :return: A list of strings representing the resource types.
         """
-        return [r.toCode() for r in self._jds.getResourceTypes()]
+        return list(self._jds.getResourceTypes())
 
     @property
     def write(self) -> "DataSinks":

{pathling-8.0.0.dev3 → pathling-8.0.0.dev5/pathling.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pathling
-Version: 8.0.0.dev3
+Version: 8.0.0.dev5
 Summary: Python API for Pathling
 Home-page: https://github.com/aehrc/pathling
 Author: Australian e-Health Research Centre, CSIRO

{pathling-8.0.0.dev3 → pathling-8.0.0.dev5}/tests/test_datasource.py

@@ -17,10 +17,9 @@ import os
 from tempfile import TemporaryDirectory
 
 from flask import Response
-from pyspark.sql import Row, DataFrame
-from pytest import fixture
-
 from pathling.datasource import DataSource
+from pyspark.sql import DataFrame, Row
+from pytest import fixture
 
 
 @fixture(scope="function", autouse=True)
@@ -290,3 +289,21 @@ def parquet_query(data_source: DataSource) -> DataFrame:
 
 def delta_query(data_source: DataSource) -> DataFrame:
     return ndjson_query(data_source)
+
+
+def test_datasource_resource_types(ndjson_test_data_dir, pathling_ctx):
+    """Test that resource_types() returns a list of strings."""
+    data_source = pathling_ctx.read.ndjson(ndjson_test_data_dir)
+    
+    # Call the resource_types method.
+    resource_types = data_source.resource_types()
+    
+    # Verify it returns a list.
+    assert isinstance(resource_types, list)
+    
+    # Verify the list contains strings.
+    assert all(isinstance(rt, str) for rt in resource_types)
+    
+    # Verify expected resource types are present.
+    assert "Patient" in resource_types
+    assert "Condition" in resource_types

pathling-8.0.0.dev3/examples/bulk.py

@@ -1,151 +0,0 @@
-#  Copyright 2025 Commonwealth Scientific and Industrial Research
-#  Organisation (CSIRO) ABN 41 687 119 230.
-# 
-#  Licensed under the Apache License, Version 2.0 (the "License");
-#  you may not use this file except in compliance with the License.
-#  You may obtain a copy of the License at
-# 
-#      http://www.apache.org/licenses/LICENSE-2.0
-# 
-#  Unless required by applicable law or agreed to in writing, software
-#  distributed under the License is distributed on an "AS IS" BASIS,
-#  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-#  See the License for the specific language governing permissions and
-#  limitations under the License.
-
-import os
-import tempfile
-from datetime import datetime, timezone
-
-from pathling import PathlingContext
-
-jwk = """
-{
-  "kty": "RSA",
-  "alg": "RS384",
-  "n": "jcrw7Jio4RVAMlo2clxqkmT9nmg_w1pXhpChg0jp41fKKfDXAtlIRhL_Ij8_N71l5KVxNQWeNeGsO0op73Rj28HR885fxJ2jimYFyD0fsftjjHvYkV_GskFubhcURbHAvx3lVrwLFyILq8sydF2G48A-XSfVAHPE6yEimusRRNihPmbM-MDlBuQkLBtwnT0bDXUEIlpDvlPB30Im2QOgvYTsMAnI-MzemOAtF5Xe5wCsj27nityK5AlnAJLFXfeeFqySoIyR7FaaQ1eay40MV-ZyDULSPtV4C-58eh3V2SL-qkQEsfQSuu3rqb-lgOz1-gl4FqTIz2JGtpEsTM7Uww",
-  "e": "AQAB",
-  "d": "kwNFEgpaxeAeHTtrypSZoXjLM7u-YM3czV9w8huCrjSg1SSXgFykAJX6zT40BHJbMv8xhcgEQZBMub69vBqoAOirWPky5KiNMPG7VirlRDaGJSJDH-UJQzaUJCM3c-bYzQXpDE3rxBBkCXHJcJQabAkwDa8-4F26YFjWGqUMsFOE1sxTXPnJG8qBTYxTSFxnWNf6U_kbGOQlWtHd1TgxPjXzmU6H472igte6SZEATh9eyYgPJrAqnw4qRNGy5pnAHkuIrCHIMaktR34LKFHHl3_xsLSHo9QmPfEdR5soKIKQIph2KRYArx4U03larr7vbZMSOypLqBtoRVlzvx0h",
-  "p": "wmc-aV7SbViyP50B0s_6wrDlOjGid9kO7QePuohFLmJWuC8TP8VYeSBscCPf6gX40O8agiCrsBuz2ZUTZDlYBXPHRiYprdV11SgCXkfTw6-G5CD2Xjq43gcTzFOy2q2FlU5YtBkPVTrsYMH8p6F09sZRu-4rnCOpgoahbAawGXs",
-  "q": "urhDpiHoZj0SBjmfn8GTHNh3FoUE8xiG3s0e64xSIBE3PzXCmskZpJuKGqgPX-wSXer2_WtmJUzOCucajcd4HQp222PWMKhc1HVZMj4073XQKDGqe_M7ZH29RbS9x93zhNgvFFiSdubQTg9SHJXL3Ja0f3IYxReha13G9YDSG1k",
-  "dp": "thWN15QA9HpHOl4M_y_eZ8zYZ5Fl42tjF5Alh0lrwu5I22r8VJa7L3i3GLIBYGkHjGroIUoIhYLtCbcf2pf7Yd_3njTQhQmSvHwk-7m7F2aoqbRWDhxiW1O1r4QV2cz9ecNQQh_WxLXUASyxQTFxJFLM64FBR5X_h0oil9QLzVE",
-  "dq": "W_t8L_JSR1Ncdr6aWRwGOdaVS_25g3wYrNeFnOoiZvO0MKpuNMxOmp2Y-irCcDGelq-yfwMSbduZQRu6JBAYps3J4agcExpNqMgqaarlbvWt1q8o2ijnoEilHhq8xyIa3d2Vy8MaXAK2qU242KYeqIuBXas6cpWCip7G7ZhJaPk",
-  "qi": "bZvyduEpMUYyGXhd-MnHyKOiJtCUF_kbM0hUGr8AfJ6_bi8MEjBNMt5qZKGYYT6bXFJWiTTUFq6nZLmQJ7cY5lv57gAQOTlLy6hp-nqkNrH1P-5UAzEbUMhIdnPQcDEkBEjpfObHlwtrmaFFVKgpm5vqFFD-szMHPuZ43o0vS98",
-  "key_ops": [
-    "sign"
-  ],
-  "ext": true,
-  "kid": "b31ab1cd8db2c39287b3267a2914600c"
-}
-"""
-
-client_id = "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCIsImtpZCI6InJlZ2lzdHJhdGlvbi10b2tlbiJ9.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.qI-820847HN1S37IGMVMKJRGeXQBrgbx91UZ7Av9djs"
-
-
-def test_bulk_exports():
-    # Initialize PathlingContext.
-    pc = PathlingContext.create()
-
-    # Base parameters from the demo server
-    fhir_server = "https://bulk-data.smarthealthit.org/eyJlcnIiOiIiLCJwYWdlIjoxMDAwMCwidGx0IjoxNSwibSI6MSwiZGVsIjowLCJzZWN1cmUiOjEsIm9wcCI6MTB9/fhir"
-    output_base = os.path.join(tempfile.gettempdir(), "bulk_export_test")
-    
-    if os.path.exists(output_base):
-        import shutil
-        shutil.rmtree(output_base)
-    os.makedirs(output_base)
-
-    # Test 1: System level export with all parameters.
-    print("\n=== Testing system level export with all parameters ===")
-    pc.read.bulk(
-        fhir_endpoint_url=fhir_server,
-        output_dir=f"{output_base}/system_detailed",
-        output_format="application/fhir+ndjson",
-        since=datetime(2015, 1, 1, tzinfo=timezone.utc),
-        types=["Patient", "Observation"],
-        elements=["id", "status"],
-        include_associated_data=["LatestProvenanceResources"],
-        type_filters=["Patient?status=active"],
-        output_extension="ndjson",
-        timeout=3600,
-        max_concurrent_downloads=5,
-        auth_config={
-            "enabled": True,
-            "client_id": client_id,
-            "private_key_jwk": jwk,
-            "token_endpoint": "https://bulk-data.smarthealthit.org/auth/token",
-            "use_smart": True,
-            "use_form_for_basic_auth": False,
-            "scope": "system/Patient.r system/Observation.r",
-            "token_expiry_tolerance": 120
-        }
-    )
-    print("System export completed successfully")
-
-    # Test 2: Group level export with minimal parameters.
-    print("\n=== Testing group level export with minimal parameters ===")
-    pc.read.bulk(
-        fhir_endpoint_url=fhir_server,
-        output_dir=f"{output_base}/group_basic",
-        group_id="BMCHealthNet"
-    )
-    print("Group export completed successfully")
-
-    # Test 3: Group level export with all parameters.
-    print("\n=== Testing group level export with all parameters ===")
-    pc.read.bulk(
-        fhir_endpoint_url=fhir_server,
-        output_dir=f"{output_base}/group_detailed",
-        group_id="BMCHealthNet",
-        output_format="application/fhir+ndjson",
-        since=datetime(2015, 1, 1, tzinfo=timezone.utc),
-        types=["Patient", "Condition", "Observation"],
-        elements=["id", "status"],
-        include_associated_data=["LatestProvenanceResources"],
-        type_filters=["Patient?status=active"],
-        output_extension="ndjson",
-        timeout=1800,
-        max_concurrent_downloads=8
-    )
-    print("Group export completed successfully")
-
-    # Test 4: Patient level export with minimal parameters.
-    print("\n=== Testing patient level export with minimal parameters ===")
-    pc.read.bulk(
-        fhir_endpoint_url=fhir_server,
-        output_dir=f"{output_base}/patient_basic",
-        patients=[
-            "Patient/58c297c4-d684-4677-8024-01131d93835e",
-            "Patient/118616a4-f0b2-411f-8050-39d5d27c738c"
-        ]
-    )
-    print("Patient export completed successfully")
-
-    # Test 5: Patient level export with all parameters.
-    print("\n=== Testing patient level export with all parameters ===")
-    pc.read.bulk(
-        fhir_endpoint_url=fhir_server,
-        output_dir=f"{output_base}/patient_detailed",
-        patients=[
-            "Patient/58c297c4-d684-4677-8024-01131d93835e",
-            "Patient/118616a4-f0b2-411f-8050-39d5d27c738c",
-            "Patient/21fba439-ca79-411f-a081-37a432a78f3a"
-        ],
-        output_format="application/fhir+ndjson",
-        since=datetime(2020, 1, 1, tzinfo=timezone.utc),
-        types=["Observation", "MedicationRequest"],
-        elements=["id", "status", "code"],
-        include_associated_data=["LatestProvenanceResources"],
-        type_filters=["Observation?category=vital-signs"],
-        output_extension="ndjson",
-        timeout=2400,
-        max_concurrent_downloads=3
-    )
-    print("Patient export completed successfully")
-
-    print("\nAll bulk exports completed successfully!")
-    print(f"Output written to: {output_base}")
-
-
-if __name__ == "__main__":
-    test_bulk_exports()