patchworks 1.2.0__tar.gz → 1.2.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {patchworks-1.2.0 → patchworks-1.2.1}/PKG-INFO +3 -1
- {patchworks-1.2.0 → patchworks-1.2.1}/cliff.toml +5 -3
- {patchworks-1.2.0 → patchworks-1.2.1}/pyproject.toml +6 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/.github/workflows/docs.yml +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/.github/workflows/lint.yml +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/.github/workflows/release.yml +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/.gitignore +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/.markdownlint-cli2.yaml +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/LICENSE +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/README.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/api/chunks.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/api/cluster.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/api/io.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/api/merge_tile_labels.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/api/plugins/cellpose.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/api/plugins/dog.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/api/plugins/napari.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/api/plugins/ome_zarr.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/api/relabel.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/api/tile_process.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/assets/logo.png +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/examples/cellpose_2d.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/examples/cellpose_2d.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/examples/cellpose_3d.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/examples/cellpose_3d.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/examples/custom.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/examples/custom_method.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/examples/dog.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/examples/dog.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/examples/standalone_merge.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/examples/stardist.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/examples/stardist_2d.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/getting_started.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/guide/gpu_distributed.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/guide/merging.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/guide/ome_zarr_napari.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/guide/performance.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/guide/pitfalls.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/guide/skip_empty.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/guide/snakemake.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/guide/tiling.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/docs/index.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/mkdocs.yml +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/__init__.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/_chunks.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/_cluster.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/_core.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/_distributed.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/_io.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/_merge.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/_relabel.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/_relations.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/plugins/__init__.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/plugins/cellpose.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/plugins/dog.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/plugins/napari.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/src/patchworks/plugins/ome_zarr.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/tests/test_core.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/tests/test_distributed.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/tests/test_dog.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/tests/test_napari.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/tests/test_ome_zarr.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/tests/test_relations.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/README.md +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/Snakefile +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/config/config.yaml +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/config/config_cilia.yaml +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/config/config_cyto.yaml +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/config/config_nuclei.yaml +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/config/multi.yaml +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/pixi.toml +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/profile/slurm/config.yaml +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/rules/common.smk +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/rules/convert.smk +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/rules/merge.smk +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/rules/segment.smk +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/scripts/_pw.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/scripts/convert.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/scripts/fetch_model.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/scripts/merge.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/scripts/prepare_tiles.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/scripts/run_multi.py +0 -0
- {patchworks-1.2.0 → patchworks-1.2.1}/workflow/scripts/segment_tile.py +0 -0
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Metadata-Version: 2.4
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Name: patchworks
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Version: 1.2.
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Version: 1.2.1
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Summary: Tiled processing of arbitrarily large images with globally consistent labels
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Project-URL: Homepage, https://github.com/imcf/patchworks
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Project-URL: Issues, https://github.com/imcf/patchworks/issues
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@@ -39,6 +39,7 @@ Requires-Dist: napari[all]>=0.7.1; extra == 'all'
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Requires-Dist: numpy<2.5; extra == 'all'
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Requires-Dist: nvidia-ml-py; extra == 'all'
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Requires-Dist: psutil; extra == 'all'
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Requires-Dist: pyqt6<6.10; extra == 'all'
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Requires-Dist: scikit-image; extra == 'all'
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Requires-Dist: tqdm; extra == 'all'
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Provides-Extra: bioio
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@@ -80,6 +81,7 @@ Requires-Dist: lxml-html-clean; extra == 'napari'
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Requires-Dist: napari-chunked-regionprops>=0.1.0; extra == 'napari'
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Requires-Dist: napari[all]>=0.7.1; extra == 'napari'
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Requires-Dist: numpy<2.5; extra == 'napari'
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Requires-Dist: pyqt6<6.10; extra == 'napari'
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Provides-Extra: workflow
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Requires-Dist: openpyxl; extra == 'workflow'
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Requires-Dist: snakemake-executor-plugin-slurm; extra == 'workflow'
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- {% if commit.scope %}**{{ commit.scope }}**: {% endif %}{{ commit.message | split(pat="\n") | first }}
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{% endfor %}
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{% endfor %}\
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{%
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{% set contributor_commits = commits | unique(attribute="author.name") %}
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{% if contributor_commits | length > 0 %}
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### 👥 Contributors
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{% if c.github.username %}* @{{ c.github.username }}
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{% else %}* {{ c.author.name }}
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{% endif %}\
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{% endfor %}
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{% endif %}\
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@@ -77,6 +77,11 @@ imaris = ["imaris-ims-file-reader"]
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# their backing dask/zarr arrays — the "Measure" dock widget. Formerly
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# napari-dask-ndmeasure; renamed when its engine dropped dask_image.ndmeasure
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# for a chunk-local map/merge that scales with chunk count, not object count.
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# - pyqt6 < 6.10: PyQt6-Qt6 6.10.2's Windows wheel fails to import (`DLL load
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# failed while importing QtWidgets: The specified procedure could not be
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# found`) — confirmed unrelated to napari/qtpy, reproduces on a bare
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# `from PyQt6.QtWidgets import QApplication`. 6.9.1 works; excluding the
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# whole 6.10.x line until a fixed release is confirmed.
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napari = [
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]
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# workflow runs the Snakemake pipeline (per-tile SLURM jobs across GPUs).
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# openpyxl -> scripts/run_multi.py writes label_relations() output as an
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