patchworks 0.9.0__tar.gz → 0.9.1__tar.gz

{patchworks-0.9.0 → patchworks-0.9.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: patchworks
-Version: 0.9.0
+Version: 0.9.1
 Summary: Tiled processing of arbitrarily large images with globally consistent labels
 Project-URL: Homepage, https://github.com/imcf/patchworks
 Project-URL: Issues, https://github.com/imcf/patchworks/issues
@@ -30,6 +30,7 @@ Requires-Dist: bioio-nd2; extra == 'all'
 Requires-Dist: bioio-ome-tiff; extra == 'all'
 Requires-Dist: bioio-tifffile; extra == 'all'
 Requires-Dist: imaris-ims-file-reader; extra == 'all'
+Requires-Dist: napari[all]; extra == 'all'
 Requires-Dist: nvidia-ml-py; extra == 'all'
 Requires-Dist: psutil; extra == 'all'
 Requires-Dist: scikit-image; extra == 'all'
@@ -103,7 +104,7 @@ pip install "patchworks[cellpose]" # Cellpose plugin
 pip install "patchworks[bioio]"    # convert any image format to OME-ZARR
 pip install "patchworks[imaris]"   # convert Imaris .ims files to OME-ZARR
 pip install "patchworks[napari]"   # interactive napari viewer plugin
-pip install "patchworks[all]"      # Everything (except napari GUI)
+pip install "patchworks[all]"      # Everything, incl. the napari viewer
 ```
 
 > `bioio` reads CZI/LIF/ND2/OME-TIFF/… The `[bioio]` extra bundles the common

{patchworks-0.9.0 → patchworks-0.9.1}/README.md

@@ -37,7 +37,7 @@ pip install "patchworks[cellpose]" # Cellpose plugin
 pip install "patchworks[bioio]"    # convert any image format to OME-ZARR
 pip install "patchworks[imaris]"   # convert Imaris .ims files to OME-ZARR
 pip install "patchworks[napari]"   # interactive napari viewer plugin
-pip install "patchworks[all]"      # Everything (except napari GUI)
+pip install "patchworks[all]"      # Everything, incl. the napari viewer
 ```
 
 > `bioio` reads CZI/LIF/ND2/OME-TIFF/… The `[bioio]` extra bundles the common

{patchworks-0.9.0 → patchworks-0.9.1}/docs/guide/ome_zarr_napari.md

@@ -144,8 +144,8 @@ view_in_napari("scan.zarr", labels="labels.zarr")
 ```
 
 !!! note
-    napari is a GUI-heavy extra and is **not** included in `patchworks[all]`.
-    Install it explicitly: `pip install "patchworks[napari]"`.
+    napari ships in `patchworks[all]`, or install just it with
+    `pip install "patchworks[napari]"`.
 
 ## End-to-end
 

{patchworks-0.9.0 → patchworks-0.9.1}/pyproject.toml

@@ -56,11 +56,16 @@ bioio = [
 ]
 # imaris reads .ims files natively (HDF5, no JVM) for OME-ZARR conversion.
 imaris = ["imaris-ims-file-reader"]
-# napari enables the interactive viewer plugin (GUI-heavy, kept out of [all]).
+# napari enables the interactive viewer plugin.
 napari = ["napari[all]"]
 dev = ["pytest", "pytest-cov", "scikit-image", "psutil", "tqdm"]
 docs = ["mkdocs-material>=9.0", "mkdocstrings[python]>=0.24"]
-all = ["patchworks[io,gpu,bioio,imaris]", "psutil", "tqdm", "scikit-image"]
+all = [
+    "patchworks[io,gpu,bioio,imaris,napari]",
+    "psutil",
+    "tqdm",
+    "scikit-image",
+]
 
 [project.urls]
 Homepage = "https://github.com/imcf/patchworks"