patchworks 0.11.9__tar.gz → 0.11.11__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (70) hide show
  1. {patchworks-0.11.9 → patchworks-0.11.11}/PKG-INFO +5 -1
  2. {patchworks-0.11.9 → patchworks-0.11.11}/README.md +4 -0
  3. patchworks-0.11.11/docs/assets/logo.png +0 -0
  4. {patchworks-0.11.9 → patchworks-0.11.11}/docs/index.md +4 -0
  5. {patchworks-0.11.9 → patchworks-0.11.11}/mkdocs.yml +2 -0
  6. {patchworks-0.11.9 → patchworks-0.11.11}/.github/workflows/docs.yml +0 -0
  7. {patchworks-0.11.9 → patchworks-0.11.11}/.github/workflows/lint.yml +0 -0
  8. {patchworks-0.11.9 → patchworks-0.11.11}/.github/workflows/release.yml +0 -0
  9. {patchworks-0.11.9 → patchworks-0.11.11}/.gitignore +0 -0
  10. {patchworks-0.11.9 → patchworks-0.11.11}/.markdownlint-cli2.yaml +0 -0
  11. {patchworks-0.11.9 → patchworks-0.11.11}/cliff.toml +0 -0
  12. {patchworks-0.11.9 → patchworks-0.11.11}/docs/api/chunks.md +0 -0
  13. {patchworks-0.11.9 → patchworks-0.11.11}/docs/api/cluster.md +0 -0
  14. {patchworks-0.11.9 → patchworks-0.11.11}/docs/api/io.md +0 -0
  15. {patchworks-0.11.9 → patchworks-0.11.11}/docs/api/merge_tile_labels.md +0 -0
  16. {patchworks-0.11.9 → patchworks-0.11.11}/docs/api/plugins/cellpose.md +0 -0
  17. {patchworks-0.11.9 → patchworks-0.11.11}/docs/api/plugins/napari.md +0 -0
  18. {patchworks-0.11.9 → patchworks-0.11.11}/docs/api/plugins/ome_zarr.md +0 -0
  19. {patchworks-0.11.9 → patchworks-0.11.11}/docs/api/relabel.md +0 -0
  20. {patchworks-0.11.9 → patchworks-0.11.11}/docs/api/tile_process.md +0 -0
  21. {patchworks-0.11.9 → patchworks-0.11.11}/docs/examples/cellpose_2d.md +0 -0
  22. {patchworks-0.11.9 → patchworks-0.11.11}/docs/examples/cellpose_2d.py +0 -0
  23. {patchworks-0.11.9 → patchworks-0.11.11}/docs/examples/cellpose_3d.md +0 -0
  24. {patchworks-0.11.9 → patchworks-0.11.11}/docs/examples/cellpose_3d.py +0 -0
  25. {patchworks-0.11.9 → patchworks-0.11.11}/docs/examples/custom.md +0 -0
  26. {patchworks-0.11.9 → patchworks-0.11.11}/docs/examples/custom_method.py +0 -0
  27. {patchworks-0.11.9 → patchworks-0.11.11}/docs/examples/standalone_merge.md +0 -0
  28. {patchworks-0.11.9 → patchworks-0.11.11}/docs/examples/stardist.md +0 -0
  29. {patchworks-0.11.9 → patchworks-0.11.11}/docs/examples/stardist_2d.py +0 -0
  30. {patchworks-0.11.9 → patchworks-0.11.11}/docs/getting_started.md +0 -0
  31. {patchworks-0.11.9 → patchworks-0.11.11}/docs/guide/gpu_distributed.md +0 -0
  32. {patchworks-0.11.9 → patchworks-0.11.11}/docs/guide/merging.md +0 -0
  33. {patchworks-0.11.9 → patchworks-0.11.11}/docs/guide/ome_zarr_napari.md +0 -0
  34. {patchworks-0.11.9 → patchworks-0.11.11}/docs/guide/performance.md +0 -0
  35. {patchworks-0.11.9 → patchworks-0.11.11}/docs/guide/pitfalls.md +0 -0
  36. {patchworks-0.11.9 → patchworks-0.11.11}/docs/guide/skip_empty.md +0 -0
  37. {patchworks-0.11.9 → patchworks-0.11.11}/docs/guide/snakemake.md +0 -0
  38. {patchworks-0.11.9 → patchworks-0.11.11}/docs/guide/tiling.md +0 -0
  39. {patchworks-0.11.9 → patchworks-0.11.11}/pyproject.toml +0 -0
  40. {patchworks-0.11.9 → patchworks-0.11.11}/src/patchworks/__init__.py +0 -0
  41. {patchworks-0.11.9 → patchworks-0.11.11}/src/patchworks/_chunks.py +0 -0
  42. {patchworks-0.11.9 → patchworks-0.11.11}/src/patchworks/_cluster.py +0 -0
  43. {patchworks-0.11.9 → patchworks-0.11.11}/src/patchworks/_core.py +0 -0
  44. {patchworks-0.11.9 → patchworks-0.11.11}/src/patchworks/_distributed.py +0 -0
  45. {patchworks-0.11.9 → patchworks-0.11.11}/src/patchworks/_io.py +0 -0
  46. {patchworks-0.11.9 → patchworks-0.11.11}/src/patchworks/_merge.py +0 -0
  47. {patchworks-0.11.9 → patchworks-0.11.11}/src/patchworks/_relabel.py +0 -0
  48. {patchworks-0.11.9 → patchworks-0.11.11}/src/patchworks/plugins/__init__.py +0 -0
  49. {patchworks-0.11.9 → patchworks-0.11.11}/src/patchworks/plugins/cellpose.py +0 -0
  50. {patchworks-0.11.9 → patchworks-0.11.11}/src/patchworks/plugins/napari.py +0 -0
  51. {patchworks-0.11.9 → patchworks-0.11.11}/src/patchworks/plugins/ome_zarr.py +0 -0
  52. {patchworks-0.11.9 → patchworks-0.11.11}/tests/test_core.py +0 -0
  53. {patchworks-0.11.9 → patchworks-0.11.11}/tests/test_distributed.py +0 -0
  54. {patchworks-0.11.9 → patchworks-0.11.11}/tests/test_napari.py +0 -0
  55. {patchworks-0.11.9 → patchworks-0.11.11}/tests/test_ome_zarr.py +0 -0
  56. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/README.md +0 -0
  57. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/Snakefile +0 -0
  58. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/config/config.yaml +0 -0
  59. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/pixi.toml +0 -0
  60. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/profile/slurm/config.yaml +0 -0
  61. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/rules/common.smk +0 -0
  62. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/rules/convert.smk +0 -0
  63. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/rules/merge.smk +0 -0
  64. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/rules/segment.smk +0 -0
  65. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/scripts/_pw.py +0 -0
  66. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/scripts/convert.py +0 -0
  67. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/scripts/fetch_model.py +0 -0
  68. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/scripts/merge.py +0 -0
  69. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/scripts/prepare_tiles.py +0 -0
  70. {patchworks-0.11.9 → patchworks-0.11.11}/workflow/scripts/segment_tile.py +0 -0
{patchworks-0.11.9 → patchworks-0.11.11}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: patchworks
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- Version: 0.11.9
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+ Version: 0.11.11
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  Summary: Tiled processing of arbitrarily large images with globally consistent labels
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  Project-URL: Homepage, https://github.com/imcf/patchworks
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  Project-URL: Issues, https://github.com/imcf/patchworks/issues
@@ -76,6 +76,10 @@ Requires-Dist: snakemake-executor-plugin-slurm; extra == 'workflow'
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  Requires-Dist: snakemake>=8; extra == 'workflow'
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  Description-Content-Type: text/markdown
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+ <p align="center">
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+ <img src="https://raw.githubusercontent.com/imcf/patchworks/main/docs/assets/logo.png" alt="patchworks logo" width="220">
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+ </p>
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  # patchworks
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  [![PyPI](https://img.shields.io/pypi/v/patchworks.svg)](https://pypi.org/project/patchworks/)
{patchworks-0.11.9 → patchworks-0.11.11}/README.md RENAMED
@@ -1,3 +1,7 @@
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+ <p align="center">
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+ <img src="https://raw.githubusercontent.com/imcf/patchworks/main/docs/assets/logo.png" alt="patchworks logo" width="220">
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+ </p>
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  # patchworks
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  [![PyPI](https://img.shields.io/pypi/v/patchworks.svg)](https://pypi.org/project/patchworks/)
patchworks-0.11.11/docs/assets/logo.png ADDED
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{patchworks-0.11.9 → patchworks-0.11.11}/docs/index.md RENAMED
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  # patchworks
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+ <p align="center">
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+ <img src="assets/logo.png" alt="patchworks logo" width="200">
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+ </p>
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  **Tiled processing of arbitrarily large images — any image, any function.**
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  ```text
{patchworks-0.11.9 → patchworks-0.11.11}/mkdocs.yml RENAMED
@@ -5,6 +5,8 @@ copyright: Copyright &copy; 2025 IMCF Basel
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  theme:
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  name: material
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+ logo: assets/logo.png
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+ favicon: assets/logo.png
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  palette:
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  - scheme: default
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  primary: deep orange
{patchworks-0.11.9 → patchworks-0.11.11}/.gitignore RENAMED
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{patchworks-0.11.9 → patchworks-0.11.11}/cliff.toml RENAMED
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{patchworks-0.11.9 → patchworks-0.11.11}/docs/api/io.md RENAMED
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{patchworks-0.11.9 → patchworks-0.11.11}/pyproject.toml RENAMED
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