patchworks 0.11.19__tar.gz → 0.11.21__tar.gz

{patchworks-0.11.19 → patchworks-0.11.21}/.github/workflows/release.yml

@@ -48,17 +48,3 @@ jobs:
 
       - name: Publish to PyPI
         uses: pypa/gh-action-pypi-publish@release/v1
-
-  # Rebuild the org-wide pdoc apidocs site so it picks up the new version.
-  apidocs:
-    needs: release
-    runs-on: ubuntu-latest
-    steps:
-      - name: Trigger imcf.github.io apidocs rebuild
-        uses: peter-evans/repository-dispatch@v3
-        with:
-          # Fine-grained PAT with "Contents: write" on imcf/imcf.github.io,
-          # stored as the APIDOCS_DISPATCH_TOKEN secret in this repo.
-          token: ${{ secrets.APIDOCS_DISPATCH_TOKEN }}
-          repository: imcf/imcf.github.io
-          event-type: dispatch-event

{patchworks-0.11.19 → patchworks-0.11.21}/PKG-INFO

@@ -1,10 +1,10 @@
 Metadata-Version: 2.4
 Name: patchworks
-Version: 0.11.19
+Version: 0.11.21
 Summary: Tiled processing of arbitrarily large images with globally consistent labels
 Project-URL: Homepage, https://github.com/imcf/patchworks
 Project-URL: Issues, https://github.com/imcf/patchworks/issues
-Author: IMCF Basel
+Author-email: Laurent Guerard <laurent.guerard@unibas.ch>
 License: GPL-3.0-only
 License-File: LICENSE
 Keywords: bioimage,chunked,dask,image processing,segmentation,tiling,zarr
@@ -34,6 +34,7 @@ Requires-Dist: glasbey; extra == 'all'
 Requires-Dist: imaris-ims-file-reader; extra == 'all'
 Requires-Dist: ipykernel<7; extra == 'all'
 Requires-Dist: lxml-html-clean; extra == 'all'
+Requires-Dist: napari-dask-ndmeasure>=0.1.0; extra == 'all'
 Requires-Dist: napari[all]>=0.7.1; extra == 'all'
 Requires-Dist: numpy<2.5; extra == 'all'
 Requires-Dist: nvidia-ml-py; extra == 'all'
@@ -74,6 +75,7 @@ Provides-Extra: napari
 Requires-Dist: glasbey; extra == 'napari'
 Requires-Dist: ipykernel<7; extra == 'napari'
 Requires-Dist: lxml-html-clean; extra == 'napari'
+Requires-Dist: napari-dask-ndmeasure>=0.1.0; extra == 'napari'
 Requires-Dist: napari[all]>=0.7.1; extra == 'napari'
 Requires-Dist: numpy<2.5; extra == 'napari'
 Provides-Extra: workflow

{patchworks-0.11.19 → patchworks-0.11.21}/pyproject.toml

@@ -8,7 +8,7 @@ dynamic = ["version"]
 description = "Tiled processing of arbitrarily large images with globally consistent labels"
 readme = "README.md"
 license = { text = "GPL-3.0-only" }
-authors = [{ name = "IMCF Basel" }]
+authors = [{ name = "Laurent Guerard", email = "laurent.guerard@unibas.ch" }]
 keywords = [
     "image processing",
     "tiling",
@@ -67,12 +67,16 @@ imaris = ["imaris-ims-file-reader"]
 # - lxml-html-clean: napari's notebook_display imports lxml.html.clean, split
 #   into a separate package in lxml >= 5.2 (else ImportError on Viewer()).
 # - glasbey: distinct high-contrast label LUTs for view_in_napari.
+# - napari-dask-ndmeasure: out-of-core regionprops-style measurements
+#   (area/centroid/intensity stats) for huge Labels layers, straight off
+#   their backing dask/zarr arrays — the "Measure" dock widget.
 napari = [
     "napari[all]>=0.7.1",
     "numpy<2.5",
     "ipykernel<7",
     "lxml-html-clean",
     "glasbey",
+    "napari-dask-ndmeasure>=0.1.0",
 ]
 # workflow runs the Snakemake pipeline (per-tile SLURM jobs across GPUs).
 workflow = ["snakemake>=8", "snakemake-executor-plugin-slurm"]

{patchworks-0.11.19 → patchworks-0.11.21}/tests/test_relations.py

@@ -17,7 +17,9 @@ def test_label_relations_majority_overlap():
     b[0:2, 6:8] = 21  # 4 voxels overlap with label 2 -> tie, but let's skew it
     b[0:2, 6:7] = 20  # tip the tie: label 20 now has 6 voxels vs 21's 2
 
-    table = label_relations(da.from_array(a, chunks=(2, 5)), da.from_array(b, chunks=(2, 5)))
+    table = label_relations(
+        da.from_array(a, chunks=(2, 5)), da.from_array(b, chunks=(2, 5))
+    )
 
     assert table[1]["match"] == 10
     assert table[1]["overlap_voxels"] == 4
@@ -32,7 +34,9 @@ def test_label_relations_no_overlap_omitted():
     a[0, 0] = 1
     b = np.zeros((2, 2), dtype=np.int32)  # all background, no overlap anywhere
 
-    table = label_relations(da.from_array(a, chunks=(2, 2)), da.from_array(b, chunks=(2, 2)))
+    table = label_relations(
+        da.from_array(a, chunks=(2, 2)), da.from_array(b, chunks=(2, 2))
+    )
     assert table == {}