patchworks 0.11.10__tar.gz → 0.11.12__tar.gz

{patchworks-0.11.10 → patchworks-0.11.12}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: patchworks
-Version: 0.11.10
+Version: 0.11.12
 Summary: Tiled processing of arbitrarily large images with globally consistent labels
 Project-URL: Homepage, https://github.com/imcf/patchworks
 Project-URL: Issues, https://github.com/imcf/patchworks/issues
@@ -77,7 +77,7 @@ Requires-Dist: snakemake>=8; extra == 'workflow'
 Description-Content-Type: text/markdown
 
 <p align="center">
-  <img src="docs/assets/logo.png" alt="patchworks logo" width="220">
+  <img src="https://raw.githubusercontent.com/imcf/patchworks/main/docs/assets/logo.png" alt="patchworks logo" width="220">
 </p>
 
 # patchworks

{patchworks-0.11.10 → patchworks-0.11.12}/README.md

@@ -1,5 +1,5 @@
 <p align="center">
-  <img src="docs/assets/logo.png" alt="patchworks logo" width="220">
+  <img src="https://raw.githubusercontent.com/imcf/patchworks/main/docs/assets/logo.png" alt="patchworks logo" width="220">
 </p>
 
 # patchworks

{patchworks-0.11.10 → patchworks-0.11.12}/src/patchworks/plugins/napari.py

@@ -260,11 +260,26 @@ def view_in_napari(
     if glasbey:
         try:
             import glasbey as _glasbey
-
-            # bias lighter so colours read on napari's dark canvas
-            label_kwargs["colormap"] = _glasbey.create_palette(
-                256, lightness_bounds=(40, 100)
+            import numpy as np
+            from napari.utils.colormaps import CyclicLabelColormap
+
+            # glasbey palette (biased lighter so colours read on the dark
+            # canvas), wrapped in a CyclicLabelColormap so each label value
+            # cycles through a distinct colour. Passing the raw palette list
+            # makes napari map large label IDs past the end -> one flat colour.
+            palette = _glasbey.create_palette(256, lightness_bounds=(40, 100))
+            colors = np.array(
+                [
+                    [
+                        int(h[1:3], 16) / 255,
+                        int(h[3:5], 16) / 255,
+                        int(h[5:7], 16) / 255,
+                        1.0,
+                    ]
+                    for h in palette
+                ]
             )
+            label_kwargs["colormap"] = CyclicLabelColormap(colors=colors)
         except ImportError:
             logger.warning(
                 "glasbey not installed; using napari's default label colours "