passagemath-nauty 10.4.67__tar.gz → 10.6.45__tar.gz

{passagemath_nauty-10.4.67 → passagemath_nauty-10.6.45}/MANIFEST.in

@@ -1,3 +1,5 @@
+graft passagemath_nauty
+
 prune sage
 
 include VERSION.txt
@@ -10,6 +12,8 @@ global-exclude *.cpp
 global-exclude all__sagemath_*.py
 global-include all__sagemath_nauty.py
 
+include repair_wheel.py
+
 global-exclude __pycache__
 global-exclude *.py[co]
 global-exclude *.bak

passagemath_nauty-10.6.45/PKG-INFO

@@ -0,0 +1,146 @@
+Metadata-Version: 2.4
+Name: passagemath-nauty
+Version: 10.6.45
+Summary: passagemath: Find automorphism groups of graphs, generate non-isomorphic graphs with nauty
+Author-email: The Sage Developers <sage-support@googlegroups.com>
+Maintainer: Matthias Köppe, passagemath contributors
+License-Expression: GPL-2.0-or-later
+Project-URL: release notes, https://github.com/passagemath/passagemath/releases
+Project-URL: repo (upstream), https://github.com/sagemath/sage
+Project-URL: repo, https://github.com/passagemath/passagemath
+Project-URL: documentation, https://passagemath.org/docs/latest
+Project-URL: homepage (upstream), https://www.sagemath.org
+Project-URL: discourse, https://passagemath.discourse.group
+Project-URL: tracker (upstream), https://github.com/sagemath/sage/issues
+Project-URL: tracker, https://github.com/passagemath/passagemath/issues
+Classifier: Development Status :: 6 - Mature
+Classifier: Intended Audience :: Education
+Classifier: Intended Audience :: Science/Research
+Classifier: Operating System :: POSIX
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Operating System :: MacOS :: MacOS X
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Programming Language :: Python :: Implementation :: CPython
+Classifier: Topic :: Scientific/Engineering :: Mathematics
+Requires-Python: <3.15,>=3.10
+Description-Content-Type: text/x-rst
+Requires-Dist: cysignals!=1.12.4; sys_platform == "win32"
+Requires-Dist: cysignals!=1.12.0,>=1.11.2
+Requires-Dist: passagemath-environment~=10.6.45.0
+Requires-Dist: passagemath-graphs~=10.6.45.0
+Provides-Extra: test
+Requires-Dist: passagemath-repl; extra == "test"
+
+==========================================================================================
+passagemath: Find automorphism groups of graphs, generate non-isomorphic graphs with nauty
+==========================================================================================
+
+`passagemath <https://github.com/passagemath/passagemath>`__ is open
+source mathematical software in Python, released under the GNU General
+Public Licence GPLv2+.
+
+It is a fork of `SageMath <https://www.sagemath.org/>`__, which has been
+developed 2005-2025 under the motto “Creating a Viable Open Source
+Alternative to Magma, Maple, Mathematica, and MATLAB”.
+
+The passagemath fork uses the motto "Creating a Free Passage Between the
+Scientific Python Ecosystem and Mathematical Software Communities."
+It was created in October 2024 with the following goals:
+
+-  providing modularized installation with pip,
+-  establishing first-class membership in the scientific Python
+   ecosystem,
+-  giving `clear attribution of upstream
+   projects <https://groups.google.com/g/sage-devel/c/6HO1HEtL1Fs/m/G002rPGpAAAJ>`__,
+-  providing independently usable Python interfaces to upstream
+   libraries,
+-  offering `platform portability and integration testing
+   services <https://github.com/passagemath/passagemath/issues/704>`__
+   to upstream projects,
+-  inviting collaborations with upstream projects,
+-  `building a professional, respectful, inclusive
+   community <https://groups.google.com/g/sage-devel/c/xBzaINHWwUQ>`__,
+-  `empowering Sage users to participate in the scientific Python ecosystem
+   <https://github.com/passagemath/passagemath/issues/248>`__ by publishing packages,
+-  developing a port to `Pyodide <https://pyodide.org/en/stable/>`__ for
+   serverless deployment with Javascript,
+-  developing a native Windows port.
+
+`Full documentation <https://passagemath.org/docs/latest/html/en/index.html>`__ is
+available online.
+
+passagemath attempts to support and provides binary wheels suitable for
+all major Linux distributions and recent versions of macOS.
+
+Binary wheels for native Windows (x86_64) are are available for a subset of
+the passagemath distributions. Use of the full functionality of passagemath
+on Windows currently requires the use of Windows Subsystem for Linux (WSL)
+or virtualization.
+
+The supported Python versions in the passagemath 10.6.x series are 3.10.x-3.14.x.
+
+
+About this pip-installable distribution package
+-----------------------------------------------
+
+This pip-installable distribution ``passagemath-nauty`` provides an interface to
+`nauty and traces <https://pallini.di.uniroma1.it/>`_, the programs for computing
+automorphism groups of graphs and digraphs by Brendan McKay and Adolfo Piperno.
+
+
+What is included
+----------------
+
+- Graph generators `graphs.nauty_genbg <https://passagemath.org/docs/latest/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_genbg>`_, `graphs.nauty_geng <https://passagemath.org/docs/latest/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_geng>`_, `graphs.nauty_genktreeg <https://passagemath.org/docs/latest/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_genktreeg>`_
+
+- Hypergraph generator `hypergraphs.nauty <https://passagemath.org/docs/latest/html/en/reference/graphs/sage/graphs/hypergraph_generators.html#sage.graphs.hypergraph_generators.HypergraphGenerators.nauty>`_
+
+- Raw access to all gtools from Python
+
+- The binary wheels published on PyPI include a prebuilt copy of nauty and traces.
+
+
+Examples
+--------
+
+Using the gtools on the command line::
+
+    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty" sage -sh -c 'geng 4'
+    >A geng -d0D3 n=4 e=0-6
+    C?
+    CC
+    CE
+    CF
+    CQ
+    CU
+    CT
+    CV
+    C]
+    C^
+    C~
+    >Z 11 graphs generated in 0.00 sec
+
+Finding the installation location of a gtools program::
+
+    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty[test]" ipython
+
+    In [1]: from sage.features.nauty import NautyExecutable
+
+    In [2]: NautyExecutable('geng').absolute_filename()
+    Out[2]: '/Users/mkoeppe/.local/pipx/.cache/535c90a22321f64/lib/python3.11/site-packages/sage_wheels/bin/geng'
+
+Use with sage.graphs::
+
+    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty[test]" ipython
+
+    In [1]: from passagemath_graphs import *
+
+    In [2]: gen = graphs.nauty_geng("7 -c")  # connected graphs on 7 vertices
+
+    In [3]: len(list(gen))
+    Out[3]: 853

passagemath_nauty-10.6.45/README.rst

@@ -0,0 +1,108 @@
+==========================================================================================
+passagemath: Find automorphism groups of graphs, generate non-isomorphic graphs with nauty
+==========================================================================================
+
+`passagemath <https://github.com/passagemath/passagemath>`__ is open
+source mathematical software in Python, released under the GNU General
+Public Licence GPLv2+.
+
+It is a fork of `SageMath <https://www.sagemath.org/>`__, which has been
+developed 2005-2025 under the motto “Creating a Viable Open Source
+Alternative to Magma, Maple, Mathematica, and MATLAB”.
+
+The passagemath fork uses the motto "Creating a Free Passage Between the
+Scientific Python Ecosystem and Mathematical Software Communities."
+It was created in October 2024 with the following goals:
+
+-  providing modularized installation with pip,
+-  establishing first-class membership in the scientific Python
+   ecosystem,
+-  giving `clear attribution of upstream
+   projects <https://groups.google.com/g/sage-devel/c/6HO1HEtL1Fs/m/G002rPGpAAAJ>`__,
+-  providing independently usable Python interfaces to upstream
+   libraries,
+-  offering `platform portability and integration testing
+   services <https://github.com/passagemath/passagemath/issues/704>`__
+   to upstream projects,
+-  inviting collaborations with upstream projects,
+-  `building a professional, respectful, inclusive
+   community <https://groups.google.com/g/sage-devel/c/xBzaINHWwUQ>`__,
+-  `empowering Sage users to participate in the scientific Python ecosystem
+   <https://github.com/passagemath/passagemath/issues/248>`__ by publishing packages,
+-  developing a port to `Pyodide <https://pyodide.org/en/stable/>`__ for
+   serverless deployment with Javascript,
+-  developing a native Windows port.
+
+`Full documentation <https://passagemath.org/docs/latest/html/en/index.html>`__ is
+available online.
+
+passagemath attempts to support and provides binary wheels suitable for
+all major Linux distributions and recent versions of macOS.
+
+Binary wheels for native Windows (x86_64) are are available for a subset of
+the passagemath distributions. Use of the full functionality of passagemath
+on Windows currently requires the use of Windows Subsystem for Linux (WSL)
+or virtualization.
+
+The supported Python versions in the passagemath 10.6.x series are 3.10.x-3.14.x.
+
+
+About this pip-installable distribution package
+-----------------------------------------------
+
+This pip-installable distribution ``passagemath-nauty`` provides an interface to
+`nauty and traces <https://pallini.di.uniroma1.it/>`_, the programs for computing
+automorphism groups of graphs and digraphs by Brendan McKay and Adolfo Piperno.
+
+
+What is included
+----------------
+
+- Graph generators `graphs.nauty_genbg <https://passagemath.org/docs/latest/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_genbg>`_, `graphs.nauty_geng <https://passagemath.org/docs/latest/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_geng>`_, `graphs.nauty_genktreeg <https://passagemath.org/docs/latest/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_genktreeg>`_
+
+- Hypergraph generator `hypergraphs.nauty <https://passagemath.org/docs/latest/html/en/reference/graphs/sage/graphs/hypergraph_generators.html#sage.graphs.hypergraph_generators.HypergraphGenerators.nauty>`_
+
+- Raw access to all gtools from Python
+
+- The binary wheels published on PyPI include a prebuilt copy of nauty and traces.
+
+
+Examples
+--------
+
+Using the gtools on the command line::
+
+    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty" sage -sh -c 'geng 4'
+    >A geng -d0D3 n=4 e=0-6
+    C?
+    CC
+    CE
+    CF
+    CQ
+    CU
+    CT
+    CV
+    C]
+    C^
+    C~
+    >Z 11 graphs generated in 0.00 sec
+
+Finding the installation location of a gtools program::
+
+    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty[test]" ipython
+
+    In [1]: from sage.features.nauty import NautyExecutable
+
+    In [2]: NautyExecutable('geng').absolute_filename()
+    Out[2]: '/Users/mkoeppe/.local/pipx/.cache/535c90a22321f64/lib/python3.11/site-packages/sage_wheels/bin/geng'
+
+Use with sage.graphs::
+
+    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty[test]" ipython
+
+    In [1]: from passagemath_graphs import *
+
+    In [2]: gen = graphs.nauty_geng("7 -c")  # connected graphs on 7 vertices
+
+    In [3]: len(list(gen))
+    Out[3]: 853

passagemath_nauty-10.6.45/VERSION.txt

@@ -0,0 +1 @@
+10.6.45

passagemath_nauty-10.6.45/passagemath_nauty/__init__.py

@@ -0,0 +1,3 @@
+# sage_setup: distribution = sagemath-nauty
+
+from sage.all__sagemath_nauty import *

passagemath_nauty-10.6.45/passagemath_nauty.egg-info/PKG-INFO

@@ -0,0 +1,146 @@
+Metadata-Version: 2.4
+Name: passagemath-nauty
+Version: 10.6.45
+Summary: passagemath: Find automorphism groups of graphs, generate non-isomorphic graphs with nauty
+Author-email: The Sage Developers <sage-support@googlegroups.com>
+Maintainer: Matthias Köppe, passagemath contributors
+License-Expression: GPL-2.0-or-later
+Project-URL: release notes, https://github.com/passagemath/passagemath/releases
+Project-URL: repo (upstream), https://github.com/sagemath/sage
+Project-URL: repo, https://github.com/passagemath/passagemath
+Project-URL: documentation, https://passagemath.org/docs/latest
+Project-URL: homepage (upstream), https://www.sagemath.org
+Project-URL: discourse, https://passagemath.discourse.group
+Project-URL: tracker (upstream), https://github.com/sagemath/sage/issues
+Project-URL: tracker, https://github.com/passagemath/passagemath/issues
+Classifier: Development Status :: 6 - Mature
+Classifier: Intended Audience :: Education
+Classifier: Intended Audience :: Science/Research
+Classifier: Operating System :: POSIX
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Operating System :: MacOS :: MacOS X
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Programming Language :: Python :: Implementation :: CPython
+Classifier: Topic :: Scientific/Engineering :: Mathematics
+Requires-Python: <3.15,>=3.10
+Description-Content-Type: text/x-rst
+Requires-Dist: cysignals!=1.12.4; sys_platform == "win32"
+Requires-Dist: cysignals!=1.12.0,>=1.11.2
+Requires-Dist: passagemath-environment~=10.6.45.0
+Requires-Dist: passagemath-graphs~=10.6.45.0
+Provides-Extra: test
+Requires-Dist: passagemath-repl; extra == "test"
+
+==========================================================================================
+passagemath: Find automorphism groups of graphs, generate non-isomorphic graphs with nauty
+==========================================================================================
+
+`passagemath <https://github.com/passagemath/passagemath>`__ is open
+source mathematical software in Python, released under the GNU General
+Public Licence GPLv2+.
+
+It is a fork of `SageMath <https://www.sagemath.org/>`__, which has been
+developed 2005-2025 under the motto “Creating a Viable Open Source
+Alternative to Magma, Maple, Mathematica, and MATLAB”.
+
+The passagemath fork uses the motto "Creating a Free Passage Between the
+Scientific Python Ecosystem and Mathematical Software Communities."
+It was created in October 2024 with the following goals:
+
+-  providing modularized installation with pip,
+-  establishing first-class membership in the scientific Python
+   ecosystem,
+-  giving `clear attribution of upstream
+   projects <https://groups.google.com/g/sage-devel/c/6HO1HEtL1Fs/m/G002rPGpAAAJ>`__,
+-  providing independently usable Python interfaces to upstream
+   libraries,
+-  offering `platform portability and integration testing
+   services <https://github.com/passagemath/passagemath/issues/704>`__
+   to upstream projects,
+-  inviting collaborations with upstream projects,
+-  `building a professional, respectful, inclusive
+   community <https://groups.google.com/g/sage-devel/c/xBzaINHWwUQ>`__,
+-  `empowering Sage users to participate in the scientific Python ecosystem
+   <https://github.com/passagemath/passagemath/issues/248>`__ by publishing packages,
+-  developing a port to `Pyodide <https://pyodide.org/en/stable/>`__ for
+   serverless deployment with Javascript,
+-  developing a native Windows port.
+
+`Full documentation <https://passagemath.org/docs/latest/html/en/index.html>`__ is
+available online.
+
+passagemath attempts to support and provides binary wheels suitable for
+all major Linux distributions and recent versions of macOS.
+
+Binary wheels for native Windows (x86_64) are are available for a subset of
+the passagemath distributions. Use of the full functionality of passagemath
+on Windows currently requires the use of Windows Subsystem for Linux (WSL)
+or virtualization.
+
+The supported Python versions in the passagemath 10.6.x series are 3.10.x-3.14.x.
+
+
+About this pip-installable distribution package
+-----------------------------------------------
+
+This pip-installable distribution ``passagemath-nauty`` provides an interface to
+`nauty and traces <https://pallini.di.uniroma1.it/>`_, the programs for computing
+automorphism groups of graphs and digraphs by Brendan McKay and Adolfo Piperno.
+
+
+What is included
+----------------
+
+- Graph generators `graphs.nauty_genbg <https://passagemath.org/docs/latest/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_genbg>`_, `graphs.nauty_geng <https://passagemath.org/docs/latest/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_geng>`_, `graphs.nauty_genktreeg <https://passagemath.org/docs/latest/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_genktreeg>`_
+
+- Hypergraph generator `hypergraphs.nauty <https://passagemath.org/docs/latest/html/en/reference/graphs/sage/graphs/hypergraph_generators.html#sage.graphs.hypergraph_generators.HypergraphGenerators.nauty>`_
+
+- Raw access to all gtools from Python
+
+- The binary wheels published on PyPI include a prebuilt copy of nauty and traces.
+
+
+Examples
+--------
+
+Using the gtools on the command line::
+
+    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty" sage -sh -c 'geng 4'
+    >A geng -d0D3 n=4 e=0-6
+    C?
+    CC
+    CE
+    CF
+    CQ
+    CU
+    CT
+    CV
+    C]
+    C^
+    C~
+    >Z 11 graphs generated in 0.00 sec
+
+Finding the installation location of a gtools program::
+
+    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty[test]" ipython
+
+    In [1]: from sage.features.nauty import NautyExecutable
+
+    In [2]: NautyExecutable('geng').absolute_filename()
+    Out[2]: '/Users/mkoeppe/.local/pipx/.cache/535c90a22321f64/lib/python3.11/site-packages/sage_wheels/bin/geng'
+
+Use with sage.graphs::
+
+    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty[test]" ipython
+
+    In [1]: from passagemath_graphs import *
+
+    In [2]: gen = graphs.nauty_geng("7 -c")  # connected graphs on 7 vertices
+
+    In [3]: len(list(gen))
+    Out[3]: 853

{passagemath_nauty-10.4.67 → passagemath_nauty-10.6.45}/passagemath_nauty.egg-info/SOURCES.txt

@@ -2,7 +2,9 @@ MANIFEST.in
 README.rst
 VERSION.txt
 pyproject.toml
+repair_wheel.py
 setup.py
+passagemath_nauty/__init__.py
 passagemath_nauty.egg-info/PKG-INFO
 passagemath_nauty.egg-info/SOURCES.txt
 passagemath_nauty.egg-info/dependency_links.txt

passagemath_nauty-10.6.45/passagemath_nauty.egg-info/requires.txt

@@ -0,0 +1,9 @@
+cysignals!=1.12.0,>=1.11.2
+passagemath-environment~=10.6.45.0
+passagemath-graphs~=10.6.45.0
+
+[:sys_platform == "win32"]
+cysignals!=1.12.4
+
+[test]
+passagemath-repl

{passagemath_nauty-10.4.67 → passagemath_nauty-10.6.45}/pyproject.toml

@@ -1,13 +1,13 @@
-# Generated by SAGE_ROOT/bootstrap; do not edit
 [build-system]
 # Minimum requirements for the build system to execute.
 requires = [
-    'setuptools >= 68.1.1',
+    'setuptools >= 77.0.0',
     'pkgconfig',
-    'passagemath-setup ~= 10.4.67.0',
-    'passagemath-environment ~= 10.4.67.0',
-    'cython >=3.0, != 3.0.3, <4.0', 'cython >=3.0.8,<3.1.0',
-    'cysignals >=1.10.2', 'cysignals >=1.10.2,<1.12',
+    'passagemath-conf ~= 10.6.45.0 ; sys_platform != "win32"',
+    'passagemath-setup ~= 10.6.45.0',
+    'passagemath-environment ~= 10.6.45.0',
+    'cython >=3.0.8, <3.3.0', 'cython >=3.0.8,<3.3.0',
+    'cysignals !=1.12.4; sys_platform == "win32"', 'cysignals >=1.11.2, != 1.12.0',
 ]
 build-backend = "setuptools.build_meta"
 
@@ -15,12 +15,12 @@ build-backend = "setuptools.build_meta"
 name = "passagemath-nauty"
 description = "passagemath: Find automorphism groups of graphs, generate non-isomorphic graphs with nauty"
 dependencies = [
-    'cysignals >=1.10.2', 'cysignals >=1.10.2,<1.12',
-    'passagemath-environment ~= 10.4.67.0',
-    'passagemath-graphs ~= 10.4.67.0',
+    'cysignals !=1.12.4; sys_platform == "win32"', 'cysignals >=1.11.2, != 1.12.0',
+    'passagemath-environment ~= 10.6.45.0',
+    'passagemath-graphs ~= 10.6.45.0',
 ]
 dynamic = ["version"]
-license = {text = "GNU General Public License (GPL) v2 or later"}
+license = "GPL-2.0-or-later"
 authors = [{name = "The Sage Developers", email = "sage-support@googlegroups.com"}]
 maintainers = [
     {name = "Matthias Köppe"},
@@ -30,24 +30,25 @@ classifiers = [
     "Development Status :: 6 - Mature",
     "Intended Audience :: Education",
     "Intended Audience :: Science/Research",
-    "License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)",
     "Operating System :: POSIX",
+    "Operating System :: POSIX :: Linux",
     "Operating System :: MacOS :: MacOS X",
     "Programming Language :: Python :: 3 :: Only",
-    "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
     "Programming Language :: Python :: Implementation :: CPython",
     "Topic :: Scientific/Engineering :: Mathematics",
 ]
-requires-python = ">=3.9, <3.13"
+requires-python = ">=3.10, <3.15"
 
 [project.urls]
 "release notes" = "https://github.com/passagemath/passagemath/releases"
 "repo (upstream)" = "https://github.com/sagemath/sage"
 "repo" = "https://github.com/passagemath/passagemath"
-documentation = "https://doc.sagemath.org"
+documentation = "https://passagemath.org/docs/latest"
 "homepage (upstream)" = "https://www.sagemath.org"
 "discourse" = "https://passagemath.discourse.group"
 "tracker (upstream)" = "https://github.com/sagemath/sage/issues"
@@ -63,18 +64,15 @@ test = [
 ]
 
 [tool.cibuildwheel.linux]
-# Unfortunately CIBW_REPAIR_WHEEL_COMMAND does not expand {project} (and other placeholders),
-# so there is no clean way to refer to the repair_wheel.py script
-# https://github.com/pypa/cibuildwheel/issues/1931
 repair-wheel-command = [
-    'python3 -m pip install passagemath-conf',
-    'python3 pkgs/sagemath-nauty/repair_wheel.py {wheel}',
+    'python3 -m pip install passagemath-conf auditwheel',
+    'python3 {package}/repair_wheel.py {wheel}',
     'auditwheel repair -w {dest_dir} {wheel}',
 ]
 [tool.cibuildwheel.macos]
 repair-wheel-command = [
-    'python3 -m pip install passagemath-conf',
-    'python3 pkgs/sagemath-nauty/repair_wheel.py {wheel}',
+    'python3 -m pip install passagemath-conf auditwheel',
+    'python3 {package}/repair_wheel.py {wheel}',
     'delocate-wheel --require-archs {delocate_archs} -w {dest_dir} -v {wheel}',
 ]
 

passagemath_nauty-10.6.45/repair_wheel.py

@@ -0,0 +1,25 @@
+# Add data to the wheel
+
+import os
+import shlex
+import sys
+
+from pathlib import Path
+
+from auditwheel.wheeltools import InWheel
+
+from sage_conf import SAGE_LOCAL
+
+if "TMPDIR" in os.environ:
+    os.environ["TMPDIR"] = str(Path(os.environ["TMPDIR"]).resolve())
+
+wheel = Path(sys.argv[1])
+
+# SAGE_LOCAL/bin/* --> sage_wheels/bin/*
+# list of files from build/pkgs/nauty/spkg-install.in
+with InWheel(wheel, wheel):
+    command = f'set -o pipefail; (cd {shlex.quote(SAGE_LOCAL)} && tar cf - --dereference bin/{{addedgeg,addptg,amtog,ancestorg,assembleg,biplabg,catg,complg,converseg,copyg,countg,countneg,cubhamg,deledgeg,delptg,dimacs2g,directg,dreadnaut,dretodot,dretog,edgetransg,genbg,genbgL,geng,gengL,genposetg,genquarticg,genrang,genspecialg,gentourng,gentreeg,genktreeg,hamheuristic,labelg,linegraphg,listg,multig,nbrhoodg,newedgeg,pickg,planarg,productg,ranlabg,ransubg,{"shortg," if sys.platform != "win32" else ""}showg,subdivideg,twohamg,underlyingg,uniqg,vcolg,watercluster2,NRswitchg}}) | (mkdir -p sage_wheels && cd sage_wheels && tar xvf -)'
+    print(f'Running {command}')
+    sys.stdout.flush()
+    if os.system(f"bash -c {shlex.quote(command)}") != 0:
+        sys.exit(1)

{passagemath_nauty-10.4.67 → passagemath_nauty-10.6.45}/sage/all__sagemath_nauty.py

@@ -1,3 +1,4 @@
 # sage_setup: distribution = sagemath-nauty
+# delvewheel: patch
 
 from sage.all__sagemath_graphs import *

{passagemath_nauty-10.4.67 → passagemath_nauty-10.6.45}/setup.py

@@ -8,4 +8,7 @@ sys.path.insert(0, os.path.dirname(__file__))
 from sage_setup import sage_setup
 
 sage_setup(['sagemath-nauty'],
-           spkgs=['nauty'])
+           recurse_packages=('sage', 'passagemath_nauty'),
+           spkgs=['nauty'],
+           package_data={},
+           py_limited_api=True)

passagemath_nauty-10.4.67/PKG-INFO

@@ -1,117 +0,0 @@
-Metadata-Version: 2.1
-Name: passagemath-nauty
-Version: 10.4.67
-Summary: passagemath: Find automorphism groups of graphs, generate non-isomorphic graphs with nauty
-Author-email: The Sage Developers <sage-support@googlegroups.com>
-Maintainer: Matthias Köppe, passagemath contributors
-License: GNU General Public License (GPL) v2 or later
-Project-URL: release notes, https://github.com/passagemath/passagemath/releases
-Project-URL: repo (upstream), https://github.com/sagemath/sage
-Project-URL: repo, https://github.com/passagemath/passagemath
-Project-URL: documentation, https://doc.sagemath.org
-Project-URL: homepage (upstream), https://www.sagemath.org
-Project-URL: discourse, https://passagemath.discourse.group
-Project-URL: tracker (upstream), https://github.com/sagemath/sage/issues
-Project-URL: tracker, https://github.com/passagemath/passagemath/issues
-Classifier: Development Status :: 6 - Mature
-Classifier: Intended Audience :: Education
-Classifier: Intended Audience :: Science/Research
-Classifier: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
-Classifier: Operating System :: POSIX
-Classifier: Operating System :: MacOS :: MacOS X
-Classifier: Programming Language :: Python :: 3 :: Only
-Classifier: Programming Language :: Python :: 3.9
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3.12
-Classifier: Programming Language :: Python :: Implementation :: CPython
-Classifier: Topic :: Scientific/Engineering :: Mathematics
-Requires-Python: <3.13,>=3.9
-Description-Content-Type: text/x-rst
-Requires-Dist: cysignals>=1.10.2
-Requires-Dist: cysignals<1.12,>=1.10.2
-Requires-Dist: passagemath-environment~=10.4.67.0
-Requires-Dist: passagemath-graphs~=10.4.67.0
-Provides-Extra: test
-Requires-Dist: passagemath-repl; extra == "test"
-
-==========================================================================================
-passagemath: Find automorphism groups of graphs, generate non-isomorphic graphs with nauty
-==========================================================================================
-
-About SageMath
---------------
-
-   "Creating a Viable Open Source Alternative to
-    Magma, Maple, Mathematica, and MATLAB"
-
-   Copyright (C) 2005-2024 The Sage Development Team
-
-   https://www.sagemath.org
-
-SageMath fully supports all major Linux distributions, recent versions of
-macOS, and Windows (Windows Subsystem for Linux).
-
-See https://doc.sagemath.org/html/en/installation/index.html
-for general installation instructions.
-
-
-About this pip-installable distribution package
------------------------------------------------
-
-This pip-installable distribution ``passagemath-nauty`` provides an interface to
-`nauty and traces <https://pallini.di.uniroma1.it/>`_, the programs for computing
-automorphism groups of graphs and digraphs by Brendan McKay and Adolfo Piperno.
-
-
-What is included
-----------------
-
-- Graph generators `graphs.nauty_genbg <https://doc.sagemath.org/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_genbg>`_, `graphs.nauty_geng <https://doc.sagemath.org/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_geng>`_, `graphs.nauty_genktreeg <https://doc.sagemath.org/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_genktreeg>`_
-
-- Hypergraph generator `hypergraphs.nauty <https://doc.sagemath.org/html/en/reference/graphs/sage/graphs/hypergraph_generators.html#sage.graphs.hypergraph_generators.HypergraphGenerators.nauty>`_
-
-- Raw access to all gtools from Python
-
-- The binary wheels published on PyPI include a prebuilt copy of nauty and traces.
-
-
-Examples
---------
-
-Using the gtools on the command line::
-
-    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty" sage -sh -c 'geng 4'
-    >A geng -d0D3 n=4 e=0-6
-    C?
-    CC
-    CE
-    CF
-    CQ
-    CU
-    CT
-    CV
-    C]
-    C^
-    C~
-    >Z 11 graphs generated in 0.00 sec
-
-Finding the installation location of a gtools program::
-
-    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty[test]" ipython
-
-    In [1]: from sage.features.nauty import NautyExecutable
-
-    In [2]: NautyExecutable('geng').absolute_filename()
-    Out[2]: '/Users/mkoeppe/.local/pipx/.cache/535c90a22321f64/lib/python3.11/site-packages/sage_wheels/bin/geng'
-
-Use with sage.graphs::
-
-    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty[test]" ipython
-
-    In [1]: from sage.all__sagemath_graphs import *
-
-    In [2]: gen = graphs.nauty_geng("7 -c")  # connected graphs on 7 vertices
-
-    In [3]: len(list(gen))
-    Out[3]: 853

passagemath_nauty-10.4.67/README.rst

@@ -1,80 +0,0 @@
-==========================================================================================
-passagemath: Find automorphism groups of graphs, generate non-isomorphic graphs with nauty
-==========================================================================================
-
-About SageMath
---------------
-
-   "Creating a Viable Open Source Alternative to
-    Magma, Maple, Mathematica, and MATLAB"
-
-   Copyright (C) 2005-2024 The Sage Development Team
-
-   https://www.sagemath.org
-
-SageMath fully supports all major Linux distributions, recent versions of
-macOS, and Windows (Windows Subsystem for Linux).
-
-See https://doc.sagemath.org/html/en/installation/index.html
-for general installation instructions.
-
-
-About this pip-installable distribution package
------------------------------------------------
-
-This pip-installable distribution ``passagemath-nauty`` provides an interface to
-`nauty and traces <https://pallini.di.uniroma1.it/>`_, the programs for computing
-automorphism groups of graphs and digraphs by Brendan McKay and Adolfo Piperno.
-
-
-What is included
-----------------
-
-- Graph generators `graphs.nauty_genbg <https://doc.sagemath.org/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_genbg>`_, `graphs.nauty_geng <https://doc.sagemath.org/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_geng>`_, `graphs.nauty_genktreeg <https://doc.sagemath.org/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_genktreeg>`_
-
-- Hypergraph generator `hypergraphs.nauty <https://doc.sagemath.org/html/en/reference/graphs/sage/graphs/hypergraph_generators.html#sage.graphs.hypergraph_generators.HypergraphGenerators.nauty>`_
-
-- Raw access to all gtools from Python
-
-- The binary wheels published on PyPI include a prebuilt copy of nauty and traces.
-
-
-Examples
---------
-
-Using the gtools on the command line::
-
-    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty" sage -sh -c 'geng 4'
-    >A geng -d0D3 n=4 e=0-6
-    C?
-    CC
-    CE
-    CF
-    CQ
-    CU
-    CT
-    CV
-    C]
-    C^
-    C~
-    >Z 11 graphs generated in 0.00 sec
-
-Finding the installation location of a gtools program::
-
-    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty[test]" ipython
-
-    In [1]: from sage.features.nauty import NautyExecutable
-
-    In [2]: NautyExecutable('geng').absolute_filename()
-    Out[2]: '/Users/mkoeppe/.local/pipx/.cache/535c90a22321f64/lib/python3.11/site-packages/sage_wheels/bin/geng'
-
-Use with sage.graphs::
-
-    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty[test]" ipython
-
-    In [1]: from sage.all__sagemath_graphs import *
-
-    In [2]: gen = graphs.nauty_geng("7 -c")  # connected graphs on 7 vertices
-
-    In [3]: len(list(gen))
-    Out[3]: 853

passagemath_nauty-10.4.67/VERSION.txt

@@ -1 +0,0 @@
-10.4.67

passagemath_nauty-10.4.67/passagemath_nauty.egg-info/PKG-INFO

@@ -1,117 +0,0 @@
-Metadata-Version: 2.1
-Name: passagemath-nauty
-Version: 10.4.67
-Summary: passagemath: Find automorphism groups of graphs, generate non-isomorphic graphs with nauty
-Author-email: The Sage Developers <sage-support@googlegroups.com>
-Maintainer: Matthias Köppe, passagemath contributors
-License: GNU General Public License (GPL) v2 or later
-Project-URL: release notes, https://github.com/passagemath/passagemath/releases
-Project-URL: repo (upstream), https://github.com/sagemath/sage
-Project-URL: repo, https://github.com/passagemath/passagemath
-Project-URL: documentation, https://doc.sagemath.org
-Project-URL: homepage (upstream), https://www.sagemath.org
-Project-URL: discourse, https://passagemath.discourse.group
-Project-URL: tracker (upstream), https://github.com/sagemath/sage/issues
-Project-URL: tracker, https://github.com/passagemath/passagemath/issues
-Classifier: Development Status :: 6 - Mature
-Classifier: Intended Audience :: Education
-Classifier: Intended Audience :: Science/Research
-Classifier: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
-Classifier: Operating System :: POSIX
-Classifier: Operating System :: MacOS :: MacOS X
-Classifier: Programming Language :: Python :: 3 :: Only
-Classifier: Programming Language :: Python :: 3.9
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3.12
-Classifier: Programming Language :: Python :: Implementation :: CPython
-Classifier: Topic :: Scientific/Engineering :: Mathematics
-Requires-Python: <3.13,>=3.9
-Description-Content-Type: text/x-rst
-Requires-Dist: cysignals>=1.10.2
-Requires-Dist: cysignals<1.12,>=1.10.2
-Requires-Dist: passagemath-environment~=10.4.67.0
-Requires-Dist: passagemath-graphs~=10.4.67.0
-Provides-Extra: test
-Requires-Dist: passagemath-repl; extra == "test"
-
-==========================================================================================
-passagemath: Find automorphism groups of graphs, generate non-isomorphic graphs with nauty
-==========================================================================================
-
-About SageMath
---------------
-
-   "Creating a Viable Open Source Alternative to
-    Magma, Maple, Mathematica, and MATLAB"
-
-   Copyright (C) 2005-2024 The Sage Development Team
-
-   https://www.sagemath.org
-
-SageMath fully supports all major Linux distributions, recent versions of
-macOS, and Windows (Windows Subsystem for Linux).
-
-See https://doc.sagemath.org/html/en/installation/index.html
-for general installation instructions.
-
-
-About this pip-installable distribution package
------------------------------------------------
-
-This pip-installable distribution ``passagemath-nauty`` provides an interface to
-`nauty and traces <https://pallini.di.uniroma1.it/>`_, the programs for computing
-automorphism groups of graphs and digraphs by Brendan McKay and Adolfo Piperno.
-
-
-What is included
-----------------
-
-- Graph generators `graphs.nauty_genbg <https://doc.sagemath.org/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_genbg>`_, `graphs.nauty_geng <https://doc.sagemath.org/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_geng>`_, `graphs.nauty_genktreeg <https://doc.sagemath.org/html/en/reference/graphs/sage/graphs/graph_generators.html#sage.graphs.graph_generators.GraphGenerators.nauty_genktreeg>`_
-
-- Hypergraph generator `hypergraphs.nauty <https://doc.sagemath.org/html/en/reference/graphs/sage/graphs/hypergraph_generators.html#sage.graphs.hypergraph_generators.HypergraphGenerators.nauty>`_
-
-- Raw access to all gtools from Python
-
-- The binary wheels published on PyPI include a prebuilt copy of nauty and traces.
-
-
-Examples
---------
-
-Using the gtools on the command line::
-
-    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty" sage -sh -c 'geng 4'
-    >A geng -d0D3 n=4 e=0-6
-    C?
-    CC
-    CE
-    CF
-    CQ
-    CU
-    CT
-    CV
-    C]
-    C^
-    C~
-    >Z 11 graphs generated in 0.00 sec
-
-Finding the installation location of a gtools program::
-
-    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty[test]" ipython
-
-    In [1]: from sage.features.nauty import NautyExecutable
-
-    In [2]: NautyExecutable('geng').absolute_filename()
-    Out[2]: '/Users/mkoeppe/.local/pipx/.cache/535c90a22321f64/lib/python3.11/site-packages/sage_wheels/bin/geng'
-
-Use with sage.graphs::
-
-    $ pipx run --pip-args="--prefer-binary" --spec "passagemath-nauty[test]" ipython
-
-    In [1]: from sage.all__sagemath_graphs import *
-
-    In [2]: gen = graphs.nauty_geng("7 -c")  # connected graphs on 7 vertices
-
-    In [3]: len(list(gen))
-    Out[3]: 853

passagemath_nauty-10.4.67/passagemath_nauty.egg-info/requires.txt

@@ -1,7 +0,0 @@
-cysignals>=1.10.2
-cysignals<1.12,>=1.10.2
-passagemath-environment~=10.4.67.0
-passagemath-graphs~=10.4.67.0
-
-[test]
-passagemath-repl