PyPI - parameterrun - Versions diffs - 0.5.0__tar.gz → 0.5.2__tar.gz - Mend

parameterrun 0.5.0tar.gz → 0.5.2tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (72) hide show

{parameterrun-0.5.0 → parameterrun-0.5.2}/.github/workflows/ci.yml RENAMED Viewed

@@ -31,7 +31,16 @@ jobs:
         run: uv sync
       - name: Tests
-        run: uv run pytest -m "not mpi and not mpi_subprocess"
+        run: uv run pytest -m "not mpi and not mpi_subprocess" --cov-report=xml
+      # One upload is enough for the README badge; a missing token or Codecov outage must not fail CI
+      - name: Upload coverage to Codecov
+        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
+        uses: codecov/codecov-action@v5
+        with:
+          files: coverage.xml
+          token: ${{ secrets.CODECOV_TOKEN }}
+          fail_ci_if_error: false
       - name: Lint
         run: uv run ruff check .

parameterrun-0.5.2/.github/workflows/docs.yml ADDED Viewed

@@ -0,0 +1,53 @@
+name: Docs
+on:
+  pull_request:
+    branches: [main]
+  push:
+    branches: [main]
+  workflow_dispatch:
+permissions:
+  contents: read
+concurrency:
+  group: docs-${{ github.ref }}
+  cancel-in-progress: ${{ github.event_name == 'pull_request' }}
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v6
+      - uses: actions/setup-python@v6
+        with:
+          python-version: "3.12"
+      - name: Install uv
+        run: python -m pip install uv
+      - name: Sync docs environment
+        run: uv sync --only-group docs
+      - name: Build site
+        run: uv run --no-sync zensical build --strict
+      - uses: actions/upload-pages-artifact@v4
+        if: github.event_name != 'pull_request'
+        with:
+          path: site
+  deploy:
+    if: github.event_name != 'pull_request'
+    needs: build
+    runs-on: ubuntu-latest
+    permissions:
+      pages: write
+      id-token: write
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    steps:
+      - id: deployment
+        uses: actions/deploy-pages@v4

{parameterrun-0.5.0 → parameterrun-0.5.2}/.gitignore RENAMED Viewed

@@ -224,3 +224,6 @@ HPC_test/
 # Ferry ignore patterns
 .ferryignore
+# Affinity lock files
+*.af~lock~

{parameterrun-0.5.0 → parameterrun-0.5.2}/CHANGELOG.md RENAMED Viewed

@@ -4,6 +4,26 @@ All notable changes to this project are documented in this file.
 The format is based on Keep a Changelog and the project follows Semantic Versioning.
+## [Unreleased]
+## [0.5.2] - 2026-11-06
+### Changed
+- Documentation site: the home page shows the navigation sidebar, duplicate page titles are gone, and the header logo
+  and the browser-tab icon use a single-colour version of the mark (dark on light themes, light on dark themes).
+- CI runs only on pull requests into `main`, not again after the merge. The README CI and coverage badges follow the
+  pull-request runs.
+## [0.5.1] - 2026-11-06
+### Added
+- Project logo: light/dark wordmark at the top of the README, plus icons, favicons and a GitHub social preview in
+  `logo/` (source file `logo/logos.af`). The `logo/` folder is excluded from the sdist.
+- Documentation site at <https://davtax.github.io/ParameterRun/> (built with Zensical, checked on pull requests and deployed to GitHub Pages on every
+  push to `main`): user guide built from the README, API reference from the docstring, and changelog.
 ## [0.5.0] - 2026-11-06
 ### Added

{parameterrun-0.5.0 → parameterrun-0.5.2}/PKG-INFO RENAMED Viewed

@@ -1,8 +1,9 @@
 Metadata-Version: 2.5
 Name: parameterrun
-Version: 0.5.0
+Version: 0.5.2
 Summary: Parallel parameter sweeps with joblib/MPI and tqdm progress bars.
 Project-URL: Homepage, https://github.com/Davtax/ParameterRun
+Project-URL: Documentation, https://davtax.github.io/ParameterRun/
 Project-URL: Repository, https://github.com/Davtax/ParameterRun
 Project-URL: Issues, https://github.com/Davtax/ParameterRun/issues
 Project-URL: Changelog, https://github.com/Davtax/ParameterRun/blob/main/CHANGELOG.md
@@ -31,8 +32,29 @@ Provides-Extra: mpi
 Requires-Dist: mpi4py>=3.1; extra == 'mpi'
 Description-Content-Type: text/markdown
-# ParameterRun
+<h1 align="center">
+  <picture>
+    <source media="(prefers-color-scheme: dark)" srcset="https://raw.githubusercontent.com/Davtax/ParameterRun/main/logo/svg/logo-readme-dark.svg">
+    <img src="https://raw.githubusercontent.com/Davtax/ParameterRun/main/logo/svg/logo-readme-light.svg" alt="ParameterRun" width="520">
+  </picture>
+</h1>
+<p align="center">
+  <a href="https://pypi.org/project/parameterrun/"><img src="https://img.shields.io/pypi/v/parameterrun" alt="PyPI"></a>
+  <a href="https://github.com/Davtax/ParameterRun/releases"><img src="https://img.shields.io/github/v/release/Davtax/ParameterRun" alt="GitHub release"></a>
+  <a href="https://pepy.tech/project/parameterrun"><img src="https://static.pepy.tech/badge/parameterrun/month" alt="Downloads"></a>
+  <a href="https://pypi.org/project/parameterrun/"><img src="https://img.shields.io/pypi/pyversions/parameterrun" alt="Python versions"></a>
+  <a href="https://github.com/Davtax/ParameterRun/actions/workflows/ci.yml"><img src="https://github.com/Davtax/ParameterRun/actions/workflows/ci.yml/badge.svg?event=pull_request" alt="CI"></a>
+  <a href="https://codecov.io/gh/Davtax/ParameterRun/tree/dev"><img src="https://codecov.io/gh/Davtax/ParameterRun/branch/dev/graph/badge.svg" alt="Coverage"></a>
+  <a href="https://github.com/Davtax/ParameterRun/blob/main/LICENSE"><img src="https://img.shields.io/pypi/l/parameterrun" alt="License"></a>
+  <a href="https://github.com/astral-sh/ruff"><img src="https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json" alt="Ruff"></a>
+  <a href="https://mypy-lang.org/"><img src="https://www.mypy-lang.org/static/mypy_badge.svg" alt="Checked with mypy"></a>
+  <a href="https://github.com/astral-sh/uv"><img src="https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/uv/main/assets/badge/v0.json" alt="uv"></a>
+</p>
+**Documentation:** <https://davtax.github.io/ParameterRun/>
+<!-- --8<-- [start:intro] -->
 `parameterrun` is a lightweight utility for running parameter sweeps in Python with a simple, function-based API.
 It is designed for scientific and numerical workflows where you want to evaluate a function over one or more parameter
@@ -47,7 +69,9 @@ The package supports:
 - MPI execution with `mpi4py`
 - automatic reshaping of outputs into arrays
 - functions returning either one output or multiple outputs
+<!-- --8<-- [end:intro] -->
+<!-- --8<-- [start:install] -->
 ## Installation
 ### With `pip`
@@ -62,6 +86,9 @@ pip install parameterrun
 pip install parameterrun[mpi]
 ```
+<!-- --8<-- [end:install] -->
+<!-- --8<-- [start:idea] -->
 ## Basic idea
 The main entry point is:
@@ -74,6 +101,9 @@ The function `parameterrun(...)` evaluates a user-defined function over a set of
 sweep are identified by their names exactly as they appear in the target function signature. Additional fixed arguments
 can be passed as keyword arguments.
+<!-- --8<-- [end:idea] -->
+<!-- --8<-- [start:quickstart] -->
 ## Quick start
 ### 1. Single parameter
@@ -129,6 +159,9 @@ print(result.shape)  # (2, 3)
 This grouped-input mode is useful when some parameters are logically linked and should not be combined independently.
+<!-- --8<-- [end:quickstart] -->
+<!-- --8<-- [start:outputs] -->
 ## Multiple outputs
 If the target function returns a tuple, parameterrun returns a list of arrays, one per output channel.
@@ -169,6 +202,9 @@ If `fun` returns `None` for some points (for example, a failed solver), a `Runti
 the parameters of the first one, because the result is then no longer a numeric array. Returning a NaN array of the
 right shape for failed points keeps the result numeric.
+<!-- --8<-- [end:outputs] -->
+<!-- --8<-- [start:errors] -->
 ## Errors in the function
 `on_error` controls what happens when `fun` raises an exception at some point:
@@ -188,6 +224,9 @@ result = parameterrun(my_function, param_names="x", param_values=[1, 2, 3], on_e
 Only `Exception` subclasses are caught: `KeyboardInterrupt` and `SystemExit` always propagate.
+<!-- --8<-- [end:errors] -->
+<!-- --8<-- [start:validation] -->
 ## Validation behavior
 `parameterrun` validates inputs before launching workers and raises clear `ValueError`s when:
@@ -197,6 +236,9 @@ Only `Exception` subclasses are caught: `KeyboardInterrupt` and `SystemExit` alw
 - extra keyword arguments do not match the target function signature
 - a keyword argument conflicts with a swept parameter name
+<!-- --8<-- [end:validation] -->
+<!-- --8<-- [start:backends] -->
 ## Parallel backend
 `parameterrun` supports two execution backends:
@@ -277,6 +319,9 @@ result = parameterrun(my_function, param_names="x", param_values=[1, 2, 3], back
 If rank 0 fails while finishing the result (for example with `reshape="strict"`), every rank raises instead of waiting.
+<!-- --8<-- [end:backends] -->
+<!-- --8<-- [start:saving] -->
 ## Saving the result to a file
 `result_file` writes the result, reshaped to the grid, to a `.npy` file on rank 0. With several outputs there is one
@@ -297,6 +342,9 @@ data = np.load("sweep.npy")  # Same as result
   `RuntimeWarning`. String outputs are written as a NumPy string array.
 - The directory is checked before anything is computed.
+<!-- --8<-- [end:saving] -->
+<!-- --8<-- [start:checkpoints] -->
 ## Checkpoints for long runs
 `checkpoint` saves the finished points of a long run to a directory, so that a run killed by a crash, a node failure or
@@ -340,6 +388,9 @@ result = parameterrun(my_function, param_names=["x", "y"], param_values=[xs, ys]
   the previous snapshot. Numeric outputs are stored as plain arrays, read without pickle. Only non-numeric outputs
   (strings, dicts, ragged arrays, ...) are pickled: load such snapshots only from sources you trust.
+<!-- --8<-- [end:checkpoints] -->
+<!-- --8<-- [start:progress] -->
 ## Progress bars and verbosity
 By default (`pbar_bool=None`), the progress bar is shown when the output is a terminal or a Jupyter notebook, and hidden
@@ -362,6 +413,9 @@ result = parameterrun(my_function, param_names="x", param_values=[1, 2, 3], verb
 The progress-bar description is generated automatically from the function name and parameter names, unless you provide
 `desc` explicitly.
+<!-- --8<-- [end:progress] -->
+<!-- --8<-- [start:api] -->
 ## API reference
 `parameterrun`
@@ -398,6 +452,9 @@ parameterrun(fun, param_names, param_values, n_workers=-1, pbar_bool=None, pbar_
 * `keep_checkpoint`: keep the snapshot after success (default `True`)
 * `**kwargs`: extra fixed keyword arguments forwarded to `fun`. They cannot reuse the names of the parameters above.
+<!-- --8<-- [end:api] -->
+<!-- --8<-- [start:inputs] -->
 ## Input formats
 `parameterrun` accepts three input styles.
@@ -426,6 +483,9 @@ param_names = [["x", "y"], ["z"]]
 param_values = [[[1, 2], [10, 20]], [[100, 200, 300]], ]
 ```
+<!-- --8<-- [end:inputs] -->
+<!-- --8<-- [start:devchecks] -->
 ## Development checks
 Before opening a PR or publishing a release, run:
@@ -445,3 +505,4 @@ uv sync --extra mpi
 mpirun -n 4 uv run pytest -m mpi -o addopts="-q -m mpi"
 ```
+<!-- --8<-- [end:devchecks] -->

{parameterrun-0.5.0 → parameterrun-0.5.2}/README.md RENAMED Viewed

@@ -1,5 +1,26 @@
-# ParameterRun
+<h1 align="center">
+  <picture>
+    <source media="(prefers-color-scheme: dark)" srcset="logo/svg/logo-readme-dark.svg">
+    <img src="logo/svg/logo-readme-light.svg" alt="ParameterRun" width="520">
+  </picture>
+</h1>
+<p align="center">
+  <a href="https://pypi.org/project/parameterrun/"><img src="https://img.shields.io/pypi/v/parameterrun" alt="PyPI"></a>
+  <a href="https://github.com/Davtax/ParameterRun/releases"><img src="https://img.shields.io/github/v/release/Davtax/ParameterRun" alt="GitHub release"></a>
+  <a href="https://pepy.tech/project/parameterrun"><img src="https://static.pepy.tech/badge/parameterrun/month" alt="Downloads"></a>
+  <a href="https://pypi.org/project/parameterrun/"><img src="https://img.shields.io/pypi/pyversions/parameterrun" alt="Python versions"></a>
+  <a href="https://github.com/Davtax/ParameterRun/actions/workflows/ci.yml"><img src="https://github.com/Davtax/ParameterRun/actions/workflows/ci.yml/badge.svg?event=pull_request" alt="CI"></a>
+  <a href="https://codecov.io/gh/Davtax/ParameterRun/tree/dev"><img src="https://codecov.io/gh/Davtax/ParameterRun/branch/dev/graph/badge.svg" alt="Coverage"></a>
+  <a href="https://github.com/Davtax/ParameterRun/blob/main/LICENSE"><img src="https://img.shields.io/pypi/l/parameterrun" alt="License"></a>
+  <a href="https://github.com/astral-sh/ruff"><img src="https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json" alt="Ruff"></a>
+  <a href="https://mypy-lang.org/"><img src="https://www.mypy-lang.org/static/mypy_badge.svg" alt="Checked with mypy"></a>
+  <a href="https://github.com/astral-sh/uv"><img src="https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/uv/main/assets/badge/v0.json" alt="uv"></a>
+</p>
+**Documentation:** <https://davtax.github.io/ParameterRun/>
+<!-- --8<-- [start:intro] -->
 `parameterrun` is a lightweight utility for running parameter sweeps in Python with a simple, function-based API.
 It is designed for scientific and numerical workflows where you want to evaluate a function over one or more parameter
@@ -14,7 +35,9 @@ The package supports:
 - MPI execution with `mpi4py`
 - automatic reshaping of outputs into arrays
 - functions returning either one output or multiple outputs
+<!-- --8<-- [end:intro] -->
+<!-- --8<-- [start:install] -->
 ## Installation
 ### With `pip`
@@ -29,6 +52,9 @@ pip install parameterrun
 pip install parameterrun[mpi]
 ```
+<!-- --8<-- [end:install] -->
+<!-- --8<-- [start:idea] -->
 ## Basic idea
 The main entry point is:
@@ -41,6 +67,9 @@ The function `parameterrun(...)` evaluates a user-defined function over a set of
 sweep are identified by their names exactly as they appear in the target function signature. Additional fixed arguments
 can be passed as keyword arguments.
+<!-- --8<-- [end:idea] -->
+<!-- --8<-- [start:quickstart] -->
 ## Quick start
 ### 1. Single parameter
@@ -96,6 +125,9 @@ print(result.shape)  # (2, 3)
 This grouped-input mode is useful when some parameters are logically linked and should not be combined independently.
+<!-- --8<-- [end:quickstart] -->
+<!-- --8<-- [start:outputs] -->
 ## Multiple outputs
 If the target function returns a tuple, parameterrun returns a list of arrays, one per output channel.
@@ -136,6 +168,9 @@ If `fun` returns `None` for some points (for example, a failed solver), a `Runti
 the parameters of the first one, because the result is then no longer a numeric array. Returning a NaN array of the
 right shape for failed points keeps the result numeric.
+<!-- --8<-- [end:outputs] -->
+<!-- --8<-- [start:errors] -->
 ## Errors in the function
 `on_error` controls what happens when `fun` raises an exception at some point:
@@ -155,6 +190,9 @@ result = parameterrun(my_function, param_names="x", param_values=[1, 2, 3], on_e
 Only `Exception` subclasses are caught: `KeyboardInterrupt` and `SystemExit` always propagate.
+<!-- --8<-- [end:errors] -->
+<!-- --8<-- [start:validation] -->
 ## Validation behavior
 `parameterrun` validates inputs before launching workers and raises clear `ValueError`s when:
@@ -164,6 +202,9 @@ Only `Exception` subclasses are caught: `KeyboardInterrupt` and `SystemExit` alw
 - extra keyword arguments do not match the target function signature
 - a keyword argument conflicts with a swept parameter name
+<!-- --8<-- [end:validation] -->
+<!-- --8<-- [start:backends] -->
 ## Parallel backend
 `parameterrun` supports two execution backends:
@@ -244,6 +285,9 @@ result = parameterrun(my_function, param_names="x", param_values=[1, 2, 3], back
 If rank 0 fails while finishing the result (for example with `reshape="strict"`), every rank raises instead of waiting.
+<!-- --8<-- [end:backends] -->
+<!-- --8<-- [start:saving] -->
 ## Saving the result to a file
 `result_file` writes the result, reshaped to the grid, to a `.npy` file on rank 0. With several outputs there is one
@@ -264,6 +308,9 @@ data = np.load("sweep.npy")  # Same as result
   `RuntimeWarning`. String outputs are written as a NumPy string array.
 - The directory is checked before anything is computed.
+<!-- --8<-- [end:saving] -->
+<!-- --8<-- [start:checkpoints] -->
 ## Checkpoints for long runs
 `checkpoint` saves the finished points of a long run to a directory, so that a run killed by a crash, a node failure or
@@ -307,6 +354,9 @@ result = parameterrun(my_function, param_names=["x", "y"], param_values=[xs, ys]
   the previous snapshot. Numeric outputs are stored as plain arrays, read without pickle. Only non-numeric outputs
   (strings, dicts, ragged arrays, ...) are pickled: load such snapshots only from sources you trust.
+<!-- --8<-- [end:checkpoints] -->
+<!-- --8<-- [start:progress] -->
 ## Progress bars and verbosity
 By default (`pbar_bool=None`), the progress bar is shown when the output is a terminal or a Jupyter notebook, and hidden
@@ -329,6 +379,9 @@ result = parameterrun(my_function, param_names="x", param_values=[1, 2, 3], verb
 The progress-bar description is generated automatically from the function name and parameter names, unless you provide
 `desc` explicitly.
+<!-- --8<-- [end:progress] -->
+<!-- --8<-- [start:api] -->
 ## API reference
 `parameterrun`
@@ -365,6 +418,9 @@ parameterrun(fun, param_names, param_values, n_workers=-1, pbar_bool=None, pbar_
 * `keep_checkpoint`: keep the snapshot after success (default `True`)
 * `**kwargs`: extra fixed keyword arguments forwarded to `fun`. They cannot reuse the names of the parameters above.
+<!-- --8<-- [end:api] -->
+<!-- --8<-- [start:inputs] -->
 ## Input formats
 `parameterrun` accepts three input styles.
@@ -393,6 +449,9 @@ param_names = [["x", "y"], ["z"]]
 param_values = [[[1, 2], [10, 20]], [[100, 200, 300]], ]
 ```
+<!-- --8<-- [end:inputs] -->
+<!-- --8<-- [start:devchecks] -->
 ## Development checks
 Before opening a PR or publishing a release, run:
@@ -412,3 +471,4 @@ uv sync --extra mpi
 mpirun -n 4 uv run pytest -m mpi -o addopts="-q -m mpi"
 ```
+<!-- --8<-- [end:devchecks] -->

parameterrun-0.5.2/docs/assets/extra.css ADDED Viewed

@@ -0,0 +1,33 @@
+/* Brand colours from the logo (logo/logos.af). */
+:root,
+[data-md-color-scheme="default"] {
+  --md-primary-fg-color: #1c1c1e;
+  --md-primary-fg-color--light: #3a3a3c;
+  --md-primary-fg-color--dark: #000000;
+  --md-accent-fg-color: #0a84ff;
+  --md-typeset-a-color: #0a84ff;
+}
+[data-md-color-scheme="slate"] {
+  --md-primary-fg-color: #1c1c1e;
+  --md-primary-fg-color--light: #3a3a3c;
+  --md-primary-fg-color--dark: #000000;
+  --md-accent-fg-color: #409cff;
+  --md-typeset-a-color: #409cff;
+  --md-default-bg-color: #111113;
+}
+.md-header__button.md-logo img {
+  height: 1.6rem;
+}
+.pr-hero {
+  display: block;
+  max-width: 520px;
+  margin: 1rem auto 2rem;
+}
+/* Header logo: single-colour mark, dark on the light theme, light on the dark theme. */
+[data-md-color-scheme="slate"] .md-header__button.md-logo img {
+  content: url("logo-mark-light.svg");
+}

parameterrun-0.5.2/docs/assets/favicon.ico ADDED Viewed

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@@ -0,0 +1,13 @@
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parameterrun-0.5.2/docs/changelog.md ADDED Viewed

	@@ -0,0 +1 @@
1	+ --8<-- "CHANGELOG.md"

parameterrun-0.5.2/docs/contributing.md ADDED Viewed

@@ -0,0 +1,3 @@
+--8<-- "CONTRIBUTING.md"
+--8<-- "README.md:devchecks"

parameterrun-0.5.2/docs/guide/backends.md ADDED Viewed

@@ -0,0 +1,3 @@
+# Parallel backends
+--8<-- "README.md:backends"

parameterrun-0.5.2/docs/guide/errors.md ADDED Viewed

@@ -0,0 +1,5 @@
+# Errors and validation
+--8<-- "README.md:errors"
+--8<-- "README.md:validation"

parameterrun-0.5.2/docs/guide/progress.md ADDED Viewed

	@@ -0,0 +1 @@
1	+ --8<-- "README.md:progress"

parameterrun-0.5.2/docs/guide/results.md ADDED Viewed

@@ -0,0 +1,5 @@
+# Saving results and checkpoints
+--8<-- "README.md:saving"
+--8<-- "README.md:checkpoints"

parameterrun-0.5.2/docs/index.md ADDED Viewed

@@ -0,0 +1,14 @@
+---
+title: Home
+---
+# parameterrun { .md-visually-hidden }
+![parameterrun](assets/logo-readme-light.svg#only-light){ .pr-hero }
+![parameterrun](assets/logo-readme-dark.svg#only-dark){ .pr-hero }
+--8<-- "README.md:intro"
+--8<-- "README.md:install"
+--8<-- "README.md:idea"

parameterrun-0.5.2/docs/quickstart.md ADDED Viewed

@@ -0,0 +1,5 @@
+--8<-- "README.md:quickstart"
+--8<-- "README.md:inputs"
+--8<-- "README.md:outputs"

parameterrun-0.5.2/docs/reference.md ADDED Viewed

@@ -0,0 +1,12 @@
+# API reference
+`parameterrun` exposes a single public function.
+::: parameterrun.parameterrun
+    options:
+      show_root_heading: true
+      show_root_full_path: false
+## Parameters at a glance
+--8<-- "README.md:api"

{parameterrun-0.5.0/docs → parameterrun-0.5.2/internals}/github-actions.md RENAMED Viewed

@@ -3,13 +3,15 @@
 > **Keep this in sync:** this page describes [.github/workflows/](../.github/workflows/). When a workflow changes
 > (triggers, jobs, matrix, steps, conditions), update the chart and the tables below in the same change.
-The repository has three workflows. They form one pipeline, from a pull request to a PyPI release:
+The repository has four workflows. CI, Release and Publish form one pipeline, from a pull request to a PyPI release;
+Docs publishes the documentation site in parallel:
 | Workflow | File | Trigger | What it does |
 | --- | --- | --- | --- |
-| CI | [ci.yml](../.github/workflows/ci.yml) | `pull_request` into `main` | Tests, lint and type check on 15 OS/Python combinations, plus MPI tests on Linux, macOS and Windows |
+| CI | [ci.yml](../.github/workflows/ci.yml) | `pull_request` into `main` | Tests, lint and type check on 15 OS/Python combinations (coverage uploaded to Codecov from one), plus MPI tests on Linux, macOS and Windows |
 | Release | [release.yml](../.github/workflows/release.yml) | `push` to `main` (i.e. a merged PR) | Reads `__version__`, checks that the tag is new and that `CHANGELOG.md` has a matching entry, then creates the GitHub release and tag `vX.Y.Z` |
 | Publish | [publish.yml](../.github/workflows/publish.yml) | `workflow_run`: Release completed | If Release succeeded: builds the sdist and wheel, checks them, and uploads them to PyPI |
+| Docs | [docs.yml](../.github/workflows/docs.yml) | `pull_request` into `main`, `push` to `main`, `workflow_dispatch` | Builds the site with Zensical (`zensical build --strict`); on pull requests only as a check, otherwise also deploys it to GitHub Pages |
 ## Pipeline chart
@@ -20,11 +22,12 @@ The repository has three workflows. They form one pipeline, from a pull request
 ```mermaid
 flowchart TD
     work(["Work on dev / feature branches"]) -->|"open a PR into main"| pr
+    work -->|"open a PR into main"| dbuild
     subgraph CI["ci.yml: on pull_request into main"]
         pr{{"pull_request event"}}
         matrix["job: test (15 runs, fail-fast off)<br/>os: ubuntu, macos, windows<br/>python: 3.11, 3.12, 3.13, 3.14, 3.15"]
-        msteps["checkout, setup-python, pip install uv, uv sync<br/>pytest -m 'not mpi and not mpi_subprocess' (coverage gate 70%)<br/>ruff check, mypy"]
+        msteps["checkout, setup-python, pip install uv, uv sync<br/>pytest -m 'not mpi and not mpi_subprocess' (coverage gate 70%)<br/>ruff check, mypy<br/>ubuntu + py3.12 only: upload coverage.xml to Codecov"]
         mpi["job: test-mpi (7 runs, fail-fast off)<br/>Python 3.12<br/>ubuntu: Open MPI + MPICH + Intel MPI<br/>macos: Open MPI + MPICH<br/>windows: Microsoft MPI + Intel MPI"]
         mpisteps["uv sync --extra mpi, verify native MPI runtime<br/>full MPI suite: 4 ranks<br/>scheduling and idle-worker tests: 8 ranks<br/>pytest -m mpi_subprocess (starts its own mpiexec)"]
         pr --> matrix --> msteps
@@ -64,6 +67,14 @@ flowchart TD
         okq -->|"yes"| build --> pypi
         okq -->|"no"| skip
     end
+    merge -->|"push to main"| dbuild
+    subgraph DOCS["docs.yml: on PR into main, push to main or manual run"]
+        dbuild["job: build<br/>Python 3.12, uv sync --only-group docs<br/>zensical build --strict<br/>not a PR: upload site/"]
+        deploy["job: deploy (skipped on PRs)<br/>actions/deploy-pages, environment 'github-pages'"]
+        dbuild -->|"push or manual run"| deploy
+    end
 ```
 ## Jobs in detail
@@ -72,7 +83,7 @@ flowchart TD
 | Job | Runs on | Steps | Notes |
 | --- | --- | --- | --- |
-| `test` | ubuntu, macos, windows × Python 3.11–3.15 (15 runs) | `uv sync`, `pytest -m "not mpi and not mpi_subprocess"`, `ruff check .`, `mypy` | `fail-fast: false`, so one failing combination does not cancel the others. `addopts` in `pyproject.toml` adds the 70% coverage gate. Native MPI is only required in `test-mpi`. |
+| `test` | ubuntu, macos, windows × Python 3.11–3.15 (15 runs) | `uv sync`, `pytest -m "not mpi and not mpi_subprocess" --cov-report=xml`, `ruff check .`, `mypy`; on ubuntu + Python 3.12 only, `codecov/codecov-action` uploads `coverage.xml` (secret `CODECOV_TOKEN`, `fail_ci_if_error: false`) | `fail-fast: false`, so one failing combination does not cancel the others. `addopts` in `pyproject.toml` adds the 70% coverage gate. Native MPI is only required in `test-mpi`. |
 | `test-mpi` | Python 3.12; ubuntu with Open MPI/MPICH/Intel MPI, macos with Open MPI/MPICH, windows with Microsoft MPI/Intel MPI (7 runs) | `mpi4py/setup-mpi`, `uv sync --extra mpi`, verify the runtime vendor, full MPI suite with 4 ranks, `tests/test_mpi_rank_scaling.py` with 8 ranks, then `pytest -m mpi_subprocess` | `fail-fast: false`. Existing integration tests require 4 ranks; the scaling tests run at both 4 and 8 ranks. Subprocess tests launch their own four-rank jobs outside `mpiexec`. |
 Permissions are read-only (`contents: read`).
@@ -114,9 +125,22 @@ Release ran on (`workflow_run.head_sha`), builds with `python -m build`, validat
 uploads with `pypa/gh-action-pypi-publish`. There is no API token in the workflow: it uses the `pypi` environment and
 an OIDC token (`id-token: write`), i.e. PyPI trusted publishing.
+### Docs ([docs.yml](../.github/workflows/docs.yml))
+Runs on pull requests into `main`, on every push to `main` and on manual dispatch. Concurrency is grouped per ref
+(`docs-<ref>`): a new commit on a PR cancels the PR's previous run, while deployments from `main` queue. The `build`
+job (`contents: read`) installs only the `docs` dependency group and builds the site with
+[Zensical](https://zensical.org), which reads `mkdocs.yml`, using `zensical build --strict` (a missing README snippet
+fails the run; unlike MkDocs, Zensical 0.1 does not report broken relative links). On pull requests that is the whole
+check. Otherwise it uploads `site/` with `actions/upload-pages-artifact`, and the `deploy` job (`pages: write`,
+`id-token: write`) publishes it with `actions/deploy-pages` in the `github-pages` environment. The site's pages pull their text from `README.md` and
+`CHANGELOG.md` through snippet markers, and the API reference from the `parameterrun` docstring.
 ## What this means in practice
-- **CI only runs on pull requests into `main`.** Pushes to `dev` or feature branches are not tested by GitHub Actions.
+- **CI runs only on pull requests into `main`**, not again after the merge. The README badges follow the PR runs: the
+  CI badge filters on `event=pull_request`, and the Codecov badge shows the `dev` branch, which PR uploads are filed
+  under. Pushes to `dev` or feature branches are not tested by GitHub Actions.
 - **Every merge into `main` is a release.** If `__version__` was not bumped, Release fails at step 2 and nothing is
   published. If the `CHANGELOG.md` section is missing, it fails at step 3. Before merging: run
   `python scripts/bump_version.py …` and move the `[Unreleased]` entries under `## [X.Y.Z] - date`.

parameterrun-0.5.2/mkdocs.yml ADDED Viewed

@@ -0,0 +1,91 @@
+# Zensical reads this MkDocs-format config (https://zensical.org/docs/compatibility/mkdocs/).
+site_name: parameterrun
+site_description: Parallel parameter sweeps for Python with joblib/MPI and tqdm progress bars.
+site_url: https://davtax.github.io/ParameterRun/
+repo_url: https://github.com/Davtax/ParameterRun
+repo_name: Davtax/ParameterRun
+edit_uri: edit/dev/docs/
+copyright: Copyright &copy; David Fernández-Fernández · BSD-3-Clause
+theme:
+  name: material
+  logo: assets/logo-mark-dark.svg
+  favicon: assets/favicon.svg
+  icon:
+    repo: fontawesome/brands/github
+  font:
+    text: Inter
+    code: JetBrains Mono
+  palette:
+    - media: "(prefers-color-scheme: light)"
+      scheme: default
+      primary: custom
+      accent: custom
+      toggle:
+        icon: material/weather-night
+        name: Switch to dark mode
+    - media: "(prefers-color-scheme: dark)"
+      scheme: slate
+      primary: custom
+      accent: custom
+      toggle:
+        icon: material/weather-sunny
+        name: Switch to light mode
+  features:
+    - navigation.instant
+    - navigation.tracking
+    - navigation.sections
+    - navigation.top
+    - navigation.footer
+    - content.code.copy
+    - search.suggest
+    - search.highlight
+extra_css:
+  - assets/extra.css
+nav:
+  - Home: index.md
+  - Quick start: quickstart.md
+  - User guide:
+      - Parallel backends: guide/backends.md
+      - Saving results and checkpoints: guide/results.md
+      - Errors and validation: guide/errors.md
+      - Progress bars: guide/progress.md
+  - API reference: reference.md
+  - Changelog: changelog.md
+  - Contributing: contributing.md
+plugins:
+  - search
+  - mkdocstrings:
+      handlers:
+        python:
+          paths: [src]
+          options:
+            docstring_style: numpy
+            show_root_heading: true
+            show_source: false
+            show_signature_annotations: true
+            separate_signature: true
+            heading_level: 2
+markdown_extensions:
+  - admonition
+  - attr_list
+  - md_in_html
+  - tables
+  - toc:
+      permalink: true
+  - pymdownx.details
+  - pymdownx.highlight:
+      anchor_linenums: true
+  - pymdownx.inlinehilite
+  - pymdownx.snippets:
+      base_path: ["."]
+      check_paths: true
+  - pymdownx.superfences:
+      custom_fences:
+        - name: mermaid
+          class: mermaid
+          format: !!python/name:pymdownx.superfences.fence_code_format

{parameterrun-0.5.0 → parameterrun-0.5.2}/pyproject.toml RENAMED Viewed

@@ -1,12 +1,11 @@
 [build-system]
-requires = ["hatchling>=1.27"]
+requires = ["hatchling>=1.27", "hatch-fancy-pypi-readme>=24.1"]
 build-backend = "hatchling.build"
 [project]
 name = "parameterrun"
-dynamic = ["version"]
+dynamic = ["version", "readme"]
 description = "Parallel parameter sweeps with joblib/MPI and tqdm progress bars."
-readme = "README.md"
 license = "BSD-3-Clause"
 authors = [
     { name = "David Fernández-Fernández", email = "david.fernandezf@hotmail.com" }
@@ -36,6 +35,7 @@ dependencies = [
 [project.urls]
 Homepage = "https://github.com/Davtax/ParameterRun"
+Documentation = "https://davtax.github.io/ParameterRun/"
 Repository = "https://github.com/Davtax/ParameterRun"
 Issues = "https://github.com/Davtax/ParameterRun/issues"
 Changelog = "https://github.com/Davtax/ParameterRun/blob/main/CHANGELOG.md"
@@ -46,6 +46,11 @@ mpi = [
 ]
 [dependency-groups]
+docs = [
+    "zensical>=0.1",
+    "mkdocstrings[python]>=0.26",
+    "ruff>=0.11",
+]
 bench = [
     "ipykernel>=6.29",
     "matplotlib>=3.8",
@@ -58,7 +63,7 @@ dev = [
     "ruff>=0.11",
     "mypy>=1.10",
     "build>=1.2",
-    "twine>=6",
+    "twine>=7",
     "pydevd-pycharm>=261.23567.174",
     "psutil>=7.2.2",
     "scalene>=2.2.1",
@@ -71,6 +76,20 @@ pattern = '__version__ = "(?P<version>[^"]+)"'
 [tool.hatch.build.targets.wheel]
 packages = ["src/parameterrun"]
+[tool.hatch.build.targets.sdist]
+exclude = ["/logo"]
+# README uses relative image paths (work on GitHub and in local previews); PyPI needs absolute URLs.
+[tool.hatch.metadata.hooks.fancy-pypi-readme]
+content-type = "text/markdown"
+[[tool.hatch.metadata.hooks.fancy-pypi-readme.fragments]]
+path = "README.md"
+[[tool.hatch.metadata.hooks.fancy-pypi-readme.substitutions]]
+pattern = '(src|srcset)="logo/'
+replacement = '\1="https://raw.githubusercontent.com/Davtax/ParameterRun/main/logo/'
 [tool.pytest.ini_options]
 testpaths = ["tests"]
 addopts = "-q --cov=parameterrun --cov-report=term-missing --cov-fail-under=70"

{parameterrun-0.5.0 → parameterrun-0.5.2}/src/parameterrun/__init__.py RENAMED Viewed

@@ -1,4 +1,4 @@
-__version__ = "0.5.0"
+__version__ = "0.5.2"
 from .parallel_utils import parameterrun

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