paper-harness-cli 1.0.0__tar.gz → 2.2.0__tar.gz

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  1. paper_harness_cli-2.2.0/.github/assets/conversation-dark.svg +6608 -0
  2. paper_harness_cli-2.2.0/.github/assets/conversation-light.svg +6608 -0
  3. paper_harness_cli-2.2.0/.github/assets/hero-dark.svg +5842 -0
  4. paper_harness_cli-2.2.0/.github/assets/hero-light.svg +5842 -0
  5. paper_harness_cli-2.2.0/.github/assets/make_readme_art.py +194 -0
  6. paper_harness_cli-2.2.0/.github/workflows/ci.yml +36 -0
  7. paper_harness_cli-2.2.0/.github/workflows/publish-pypi.yml +74 -0
  8. paper_harness_cli-2.2.0/.gitignore +17 -0
  9. paper_harness_cli-2.2.0/AGENTS.md +56 -0
  10. paper_harness_cli-2.2.0/CHANGELOG.md +73 -0
  11. paper_harness_cli-2.2.0/CLAUDE.md +1 -0
  12. paper_harness_cli-2.2.0/PKG-INFO +154 -0
  13. paper_harness_cli-2.2.0/README.md +134 -0
  14. paper_harness_cli-2.2.0/SPEC.md +177 -0
  15. paper_harness_cli-2.2.0/pyproject.toml +64 -0
  16. paper_harness_cli-2.2.0/src/paperops/__init__.py +3 -0
  17. paper_harness_cli-2.2.0/src/paperops/_scaffold/BRIEF.md +63 -0
  18. paper_harness_cli-2.2.0/src/paperops/_scaffold/LOG.md +3 -0
  19. paper_harness_cli-2.2.0/src/paperops/_scaffold/README.md +40 -0
  20. paper_harness_cli-2.2.0/src/paperops/_scaffold/STYLE.md +29 -0
  21. paper_harness_cli-2.2.0/src/paperops/_scaffold/STYLE.shared.md +19 -0
  22. paper_harness_cli-2.2.0/src/paperops/_scaffold/figures/_template/figure.md +39 -0
  23. paper_harness_cli-2.2.0/src/paperops/_scaffold/figures/_template/make.py +61 -0
  24. paper_harness_cli-2.2.0/src/paperops/_scaffold/figures/common.py +144 -0
  25. paper_harness_cli-2.2.0/src/paperops/_scaffold/figures/paper.mplstyle +33 -0
  26. paper_harness_cli-2.2.0/src/paperops/_scaffold/gitignore +4 -0
  27. paper_harness_cli-2.2.0/src/paperops/_scaffold/manuscript/main.tex +23 -0
  28. paper_harness_cli-2.2.0/src/paperops/_scaffold/manuscript/numbers.tex +15 -0
  29. paper_harness_cli-2.2.0/src/paperops/_scaffold/manuscript/preamble.en.tex +17 -0
  30. paper_harness_cli-2.2.0/src/paperops/_scaffold/manuscript/preamble.ja.tex +32 -0
  31. paper_harness_cli-2.2.0/src/paperops/_scaffold/manuscript/refs.bib +1 -0
  32. paper_harness_cli-2.2.0/src/paperops/_scaffold/paper.toml +20 -0
  33. paper_harness_cli-2.2.0/src/paperops/build.py +199 -0
  34. paper_harness_cli-2.2.0/src/paperops/cli.py +126 -0
  35. paper_harness_cli-2.2.0/src/paperops/context.py +316 -0
  36. paper_harness_cli-2.2.0/src/paperops/harness.py +153 -0
  37. paper_harness_cli-2.2.0/src/paperops/project.py +106 -0
  38. paper_harness_cli-2.2.0/src/paperops/scaffold.py +137 -0
  39. paper_harness_cli-2.2.0/src/paperops/skills/paper-brief/SKILL.md +76 -0
  40. paper_harness_cli-2.2.0/src/paperops/skills/paper-check/SKILL.md +73 -0
  41. paper_harness_cli-2.2.0/src/paperops/skills/paper-draft/SKILL.md +84 -0
  42. paper_harness_cli-2.2.0/src/paperops/skills/paper-figure/SKILL.md +164 -0
  43. paper_harness_cli-2.2.0/src/paperops/skills/paper-predict/SKILL.md +190 -0
  44. paper_harness_cli-2.2.0/src/paperops/skills/paper-revise/SKILL.md +77 -0
  45. paper_harness_cli-2.2.0/src/paperops/tex.py +317 -0
  46. paper_harness_cli-2.2.0/tests/conftest.py +23 -0
  47. paper_harness_cli-2.2.0/tests/test_build.py +121 -0
  48. paper_harness_cli-2.2.0/tests/test_figures.py +76 -0
  49. paper_harness_cli-2.2.0/tests/test_harness.py +61 -0
  50. paper_harness_cli-2.2.0/tests/test_project.py +274 -0
  51. paper_harness_cli-2.2.0/tests/test_tex.py +109 -0
  52. paper_harness_cli-2.2.0/uv.lock +844 -0
  53. paper_harness_cli-1.0.0/.agents/skills/apply-template-improvement/SKILL.md +0 -46
  54. paper_harness_cli-1.0.0/.agents/skills/release/SKILL.md +0 -55
  55. paper_harness_cli-1.0.0/.agents/skills/release/agents/openai.yaml +0 -4
  56. paper_harness_cli-1.0.0/.agents/skills/review-template-regression/SKILL.md +0 -24
  57. paper_harness_cli-1.0.0/.agents/skills/triage-template-feedback/SKILL.md +0 -55
  58. paper_harness_cli-1.0.0/.claude/skills/apply-template-improvement/SKILL.md +0 -46
  59. paper_harness_cli-1.0.0/.claude/skills/review-template-regression/SKILL.md +0 -24
  60. paper_harness_cli-1.0.0/.claude/skills/triage-template-feedback/SKILL.md +0 -55
  61. paper_harness_cli-1.0.0/.github/ISSUE_TEMPLATE/config.yml +0 -5
  62. paper_harness_cli-1.0.0/.github/ISSUE_TEMPLATE/skill-request.yml +0 -35
  63. paper_harness_cli-1.0.0/.github/ISSUE_TEMPLATE/structure-change.yml +0 -37
  64. paper_harness_cli-1.0.0/.github/ISSUE_TEMPLATE/template-feedback.yml +0 -49
  65. paper_harness_cli-1.0.0/.github/PULL_REQUEST_TEMPLATE.md +0 -10
  66. paper_harness_cli-1.0.0/.github/workflows/ci.yml +0 -28
  67. paper_harness_cli-1.0.0/.github/workflows/publish-pypi.yml +0 -83
  68. paper_harness_cli-1.0.0/.github/workflows/reusable-build.yml +0 -42
  69. paper_harness_cli-1.0.0/.github/workflows/reusable-mirror-check.yml +0 -31
  70. paper_harness_cli-1.0.0/.github/workflows/reusable-release.yml +0 -37
  71. paper_harness_cli-1.0.0/.gitignore +0 -60
  72. paper_harness_cli-1.0.0/.harness/manifest.toml +0 -16
  73. paper_harness_cli-1.0.0/.harnessops/project.toml +0 -34
  74. paper_harness_cli-1.0.0/AGENTS.md +0 -75
  75. paper_harness_cli-1.0.0/CHANGELOG.md +0 -270
  76. paper_harness_cli-1.0.0/CLAUDE.md +0 -75
  77. paper_harness_cli-1.0.0/Makefile +0 -178
  78. paper_harness_cli-1.0.0/PKG-INFO +0 -130
  79. paper_harness_cli-1.0.0/README.md +0 -118
  80. paper_harness_cli-1.0.0/docs/adr/0001-authority-ownership-layout.md +0 -81
  81. paper_harness_cli-1.0.0/docs/adr/0002-cli-agent-compiler-boundary.md +0 -61
  82. paper_harness_cli-1.0.0/docs/adr/0003-revision-state-hash.md +0 -59
  83. paper_harness_cli-1.0.0/docs/architecture.md +0 -180
  84. paper_harness_cli-1.0.0/docs/change-policy.md +0 -22
  85. paper_harness_cli-1.0.0/docs/cli.md +0 -289
  86. paper_harness_cli-1.0.0/docs/current-specification.md +0 -47
  87. paper_harness_cli-1.0.0/docs/distribution.md +0 -54
  88. paper_harness_cli-1.0.0/docs/migrations/1.0.0-typed-authority.md +0 -28
  89. paper_harness_cli-1.0.0/docs/migrations/README.md +0 -49
  90. paper_harness_cli-1.0.0/docs/migrations/v0.md +0 -311
  91. paper_harness_cli-1.0.0/docs/paperops2-disposition.md +0 -287
  92. paper_harness_cli-1.0.0/docs/paperops2-evaluation-fixtures.md +0 -30
  93. paper_harness_cli-1.0.0/docs/rfcs/0001-paperops-2.md +0 -116
  94. paper_harness_cli-1.0.0/docs/skill-catalog.md +0 -136
  95. paper_harness_cli-1.0.0/docs/triage-rules.md +0 -32
  96. paper_harness_cli-1.0.0/docs/upgrade-policy.md +0 -65
  97. paper_harness_cli-1.0.0/hatch_build.py +0 -62
  98. paper_harness_cli-1.0.0/pyproject.toml +0 -30
  99. paper_harness_cli-1.0.0/scripts/check-release-version-truth.py +0 -346
  100. paper_harness_cli-1.0.0/scripts/check-scaffold-package-boundary.py +0 -260
  101. paper_harness_cli-1.0.0/scripts/cli-smoke.py +0 -25
  102. paper_harness_cli-1.0.0/src/paperops/__init__.py +0 -7
  103. paper_harness_cli-1.0.0/src/paperops/authority_bootstrap.py +0 -71
  104. paper_harness_cli-1.0.0/src/paperops/change/__init__.py +0 -6
  105. paper_harness_cli-1.0.0/src/paperops/change/catalog.py +0 -87
  106. paper_harness_cli-1.0.0/src/paperops/change/planning.py +0 -349
  107. paper_harness_cli-1.0.0/src/paperops/change/request.py +0 -165
  108. paper_harness_cli-1.0.0/src/paperops/change/transaction.py +0 -491
  109. paper_harness_cli-1.0.0/src/paperops/change/types.py +0 -51
  110. paper_harness_cli-1.0.0/src/paperops/cli/__init__.py +0 -1
  111. paper_harness_cli-1.0.0/src/paperops/cli/change_commands.py +0 -141
  112. paper_harness_cli-1.0.0/src/paperops/cli/compile_commands.py +0 -354
  113. paper_harness_cli-1.0.0/src/paperops/cli/constants.py +0 -123
  114. paper_harness_cli-1.0.0/src/paperops/cli/detach_commands.py +0 -108
  115. paper_harness_cli-1.0.0/src/paperops/cli/doctor.py +0 -62
  116. paper_harness_cli-1.0.0/src/paperops/cli/links.py +0 -193
  117. paper_harness_cli-1.0.0/src/paperops/cli/main.py +0 -778
  118. paper_harness_cli-1.0.0/src/paperops/cli/manifest.py +0 -321
  119. paper_harness_cli-1.0.0/src/paperops/cli/migration_commands.py +0 -177
  120. paper_harness_cli-1.0.0/src/paperops/cli/migrations.py +0 -189
  121. paper_harness_cli-1.0.0/src/paperops/cli/model_commands.py +0 -417
  122. paper_harness_cli-1.0.0/src/paperops/cli/models.py +0 -26
  123. paper_harness_cli-1.0.0/src/paperops/cli/notices.py +0 -116
  124. paper_harness_cli-1.0.0/src/paperops/cli/output.py +0 -106
  125. paper_harness_cli-1.0.0/src/paperops/cli/paths.py +0 -19
  126. paper_harness_cli-1.0.0/src/paperops/cli/project.py +0 -79
  127. paper_harness_cli-1.0.0/src/paperops/cli/pypi.py +0 -144
  128. paper_harness_cli-1.0.0/src/paperops/cli/runtime.py +0 -19
  129. paper_harness_cli-1.0.0/src/paperops/cli/scaffold.py +0 -172
  130. paper_harness_cli-1.0.0/src/paperops/cli/scratch.py +0 -597
  131. paper_harness_cli-1.0.0/src/paperops/cli/upgrade.py +0 -112
  132. paper_harness_cli-1.0.0/src/paperops/cli/versioning.py +0 -70
  133. paper_harness_cli-1.0.0/src/paperops/cli/workflow.py +0 -502
  134. paper_harness_cli-1.0.0/src/paperops/cli/workflow_v2_commands.py +0 -117
  135. paper_harness_cli-1.0.0/src/paperops/cli/write_commands.py +0 -274
  136. paper_harness_cli-1.0.0/src/paperops/compiler/__init__.py +0 -158
  137. paper_harness_cli-1.0.0/src/paperops/compiler/bundles.py +0 -725
  138. paper_harness_cli-1.0.0/src/paperops/compiler/compare.py +0 -67
  139. paper_harness_cli-1.0.0/src/paperops/compiler/conservation.py +0 -408
  140. paper_harness_cli-1.0.0/src/paperops/compiler/contracts.py +0 -981
  141. paper_harness_cli-1.0.0/src/paperops/compiler/inputs.py +0 -1677
  142. paper_harness_cli-1.0.0/src/paperops/compiler/materialize.py +0 -2473
  143. paper_harness_cli-1.0.0/src/paperops/compiler/patches.py +0 -113
  144. paper_harness_cli-1.0.0/src/paperops/compiler/privacy.py +0 -276
  145. paper_harness_cli-1.0.0/src/paperops/compiler/requests.py +0 -154
  146. paper_harness_cli-1.0.0/src/paperops/compiler/safe_fs.py +0 -523
  147. paper_harness_cli-1.0.0/src/paperops/compiler/storage.py +0 -115
  148. paper_harness_cli-1.0.0/src/paperops/compiler/tex.py +0 -2578
  149. paper_harness_cli-1.0.0/src/paperops/compiler/types.py +0 -648
  150. paper_harness_cli-1.0.0/src/paperops/compiler/write_transaction.py +0 -670
  151. paper_harness_cli-1.0.0/src/paperops/compiler/writer.py +0 -711
  152. paper_harness_cli-1.0.0/src/paperops/model_migration/__init__.py +0 -21
  153. paper_harness_cli-1.0.0/src/paperops/model_migration/adapters/__init__.py +0 -37
  154. paper_harness_cli-1.0.0/src/paperops/model_migration/adapters/editorial.py +0 -179
  155. paper_harness_cli-1.0.0/src/paperops/model_migration/adapters/issue.py +0 -150
  156. paper_harness_cli-1.0.0/src/paperops/model_migration/adapters/manuscript.py +0 -137
  157. paper_harness_cli-1.0.0/src/paperops/model_migration/adapters/publication.py +0 -70
  158. paper_harness_cli-1.0.0/src/paperops/model_migration/adapters/research.py +0 -467
  159. paper_harness_cli-1.0.0/src/paperops/model_migration/catalog.py +0 -124
  160. paper_harness_cli-1.0.0/src/paperops/model_migration/legacy.py +0 -449
  161. paper_harness_cli-1.0.0/src/paperops/model_migration/staging.py +0 -346
  162. paper_harness_cli-1.0.0/src/paperops/model_migration/transaction.py +0 -812
  163. paper_harness_cli-1.0.0/src/paperops/model_migration/types.py +0 -74
  164. paper_harness_cli-1.0.0/src/paperops/model_state.py +0 -157
  165. paper_harness_cli-1.0.0/src/paperops/model_validation.py +0 -355
  166. paper_harness_cli-1.0.0/src/paperops/workflow_v2/__init__.py +0 -24
  167. paper_harness_cli-1.0.0/src/paperops/workflow_v2/approvals.py +0 -56
  168. paper_harness_cli-1.0.0/src/paperops/workflow_v2/catalog.py +0 -141
  169. paper_harness_cli-1.0.0/src/paperops/workflow_v2/graph.py +0 -60
  170. paper_harness_cli-1.0.0/src/paperops/workflow_v2/issues.py +0 -86
  171. paper_harness_cli-1.0.0/src/paperops/workflow_v2/migration.py +0 -126
  172. paper_harness_cli-1.0.0/src/paperops/workflow_v2/migration_inventory.py +0 -57
  173. paper_harness_cli-1.0.0/src/paperops/workflow_v2/mutation.py +0 -147
  174. paper_harness_cli-1.0.0/src/paperops/workflow_v2/profile.py +0 -80
  175. paper_harness_cli-1.0.0/src/paperops/workflow_v2/projection.py +0 -38
  176. paper_harness_cli-1.0.0/src/paperops/workflow_v2/readiness.py +0 -45
  177. paper_harness_cli-1.0.0/src/paperops/workflow_v2/transaction.py +0 -188
  178. paper_harness_cli-1.0.0/src/paperops/workflow_v2/types.py +0 -147
  179. paper_harness_cli-1.0.0/template/.agents/README.md +0 -7
  180. paper_harness_cli-1.0.0/template/.agents/skills/ai-disclosure-check/SKILL.md +0 -42
  181. paper_harness_cli-1.0.0/template/.agents/skills/archive-scratch/SKILL.md +0 -87
  182. paper_harness_cli-1.0.0/template/.agents/skills/audit-ai-draft/SKILL.md +0 -143
  183. paper_harness_cli-1.0.0/template/.agents/skills/calibrate-claims/SKILL.md +0 -54
  184. paper_harness_cli-1.0.0/template/.agents/skills/collect-manuscript-review/SKILL.md +0 -98
  185. paper_harness_cli-1.0.0/template/.agents/skills/compile-discussion-section/SKILL.md +0 -56
  186. paper_harness_cli-1.0.0/template/.agents/skills/compile-methods-section/SKILL.md +0 -51
  187. paper_harness_cli-1.0.0/template/.agents/skills/compile-results-section/SKILL.md +0 -63
  188. paper_harness_cli-1.0.0/template/.agents/skills/content-first-gate/SKILL.md +0 -54
  189. paper_harness_cli-1.0.0/template/.agents/skills/contextualize-conditions/SKILL.md +0 -66
  190. paper_harness_cli-1.0.0/template/.agents/skills/design-manuscript-claims/SKILL.md +0 -166
  191. paper_harness_cli-1.0.0/template/.agents/skills/design-paper-figure/SKILL.md +0 -111
  192. paper_harness_cli-1.0.0/template/.agents/skills/design-paper-storyline/SKILL.md +0 -97
  193. paper_harness_cli-1.0.0/template/.agents/skills/develop-manuscript-content/SKILL.md +0 -66
  194. paper_harness_cli-1.0.0/template/.agents/skills/draft-predicted-results/SKILL.md +0 -80
  195. paper_harness_cli-1.0.0/template/.agents/skills/feedback-paper-harness/SKILL.md +0 -37
  196. paper_harness_cli-1.0.0/template/.agents/skills/figure-story-audit/SKILL.md +0 -71
  197. paper_harness_cli-1.0.0/template/.agents/skills/finalize-manuscript/SKILL.md +0 -43
  198. paper_harness_cli-1.0.0/template/.agents/skills/finish-manuscript/SKILL.md +0 -59
  199. paper_harness_cli-1.0.0/template/.agents/skills/import-manuscript/SKILL.md +0 -116
  200. paper_harness_cli-1.0.0/template/.agents/skills/improve-writing-harness/SKILL.md +0 -32
  201. paper_harness_cli-1.0.0/template/.agents/skills/integrate-writing-feedback/SKILL.md +0 -84
  202. paper_harness_cli-1.0.0/template/.agents/skills/map-result-patterns/SKILL.md +0 -131
  203. paper_harness_cli-1.0.0/template/.agents/skills/note-writing-session/SKILL.md +0 -47
  204. paper_harness_cli-1.0.0/template/.agents/skills/open-paper-scan/SKILL.md +0 -127
  205. paper_harness_cli-1.0.0/template/.agents/skills/orchestrate-manuscript-subagents/SKILL.md +0 -40
  206. paper_harness_cli-1.0.0/template/.agents/skills/paragraph-surgery/SKILL.md +0 -49
  207. paper_harness_cli-1.0.0/template/.agents/skills/peer-review-manuscript/SKILL.md +0 -153
  208. paper_harness_cli-1.0.0/template/.agents/skills/plan-figure-story/SKILL.md +0 -86
  209. paper_harness_cli-1.0.0/template/.agents/skills/polish-ai-draft/SKILL.md +0 -109
  210. paper_harness_cli-1.0.0/template/.agents/skills/public-terminology-pass/SKILL.md +0 -41
  211. paper_harness_cli-1.0.0/template/.agents/skills/pull-template-updates/SKILL.md +0 -19
  212. paper_harness_cli-1.0.0/template/.agents/skills/research-related-work/SKILL.md +0 -158
  213. paper_harness_cli-1.0.0/template/.agents/skills/resolve-local-paths/SKILL.md +0 -72
  214. paper_harness_cli-1.0.0/template/.agents/skills/respond-to-peer-review/SKILL.md +0 -139
  215. paper_harness_cli-1.0.0/template/.agents/skills/resume-session/SKILL.md +0 -55
  216. paper_harness_cli-1.0.0/template/.agents/skills/review-block-flow/SKILL.md +0 -80
  217. paper_harness_cli-1.0.0/template/.agents/skills/review-public-manuscript/SKILL.md +0 -154
  218. paper_harness_cli-1.0.0/template/.agents/skills/route-manuscript-feedback/SKILL.md +0 -54
  219. paper_harness_cli-1.0.0/template/.agents/skills/scientific-gate/SKILL.md +0 -123
  220. paper_harness_cli-1.0.0/template/.agents/skills/setup/SKILL.md +0 -137
  221. paper_harness_cli-1.0.0/template/.agents/skills/source-reach-scan/SKILL.md +0 -100
  222. paper_harness_cli-1.0.0/template/.agents/skills/start-manuscript-review/SKILL.md +0 -66
  223. paper_harness_cli-1.0.0/template/.agents/skills/submission-gate/SKILL.md +0 -78
  224. paper_harness_cli-1.0.0/template/.agents/skills/sync-ja-en/SKILL.md +0 -36
  225. paper_harness_cli-1.0.0/template/.agents/skills/sync-ja-en/scripts/sync_blocks.py +0 -52
  226. paper_harness_cli-1.0.0/template/.agents/skills/sync-ja-en/templates/drift-report.md +0 -11
  227. paper_harness_cli-1.0.0/template/.agents/skills/update-paperops/SKILL.md +0 -143
  228. paper_harness_cli-1.0.0/template/.agents/skills/update-refs/SKILL.md +0 -38
  229. paper_harness_cli-1.0.0/template/.agents/skills/venue-fit-review/SKILL.md +0 -42
  230. paper_harness_cli-1.0.0/template/.claude/hooks/refresh-session-context.sh +0 -15
  231. paper_harness_cli-1.0.0/template/.claude/rules/manuscript-editing.md +0 -10
  232. paper_harness_cli-1.0.0/template/.claude/rules/notes-session.md +0 -10
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  459. paper_harness_cli-1.0.0/template/scripts/check-section-contracts.py +0 -377
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  463. paper_harness_cli-1.0.0/template/scripts/check-submission-drift.py +0 -67
  464. paper_harness_cli-1.0.0/template/scripts/check-tex-structure.py +0 -249
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  466. paper_harness_cli-1.0.0/template/scripts/collect-manuscript-review.py +0 -256
  467. paper_harness_cli-1.0.0/template/scripts/collect-note-context.py +0 -73
  468. paper_harness_cli-1.0.0/template/scripts/export-arxiv.sh +0 -29
  469. paper_harness_cli-1.0.0/template/scripts/lint-bib.py +0 -265
  470. paper_harness_cli-1.0.0/template/scripts/mirror-check.py +0 -126
  471. paper_harness_cli-1.0.0/template/scripts/mirror-freshness-check.py +0 -209
  472. paper_harness_cli-1.0.0/template/scripts/paperops_checks.py +0 -222
  473. paper_harness_cli-1.0.0/template/scripts/paperops_editorial.py +0 -701
  474. paper_harness_cli-1.0.0/template/scripts/paperops_links.py +0 -94
  475. paper_harness_cli-1.0.0/template/scripts/paperops_models.py +0 -2197
  476. paper_harness_cli-1.0.0/template/scripts/paperops_paths.py +0 -78
  477. paper_harness_cli-1.0.0/template/scripts/paperops_schema.py +0 -992
  478. paper_harness_cli-1.0.0/template/scripts/paperops_typed_views.py +0 -98
  479. paper_harness_cli-1.0.0/template/scripts/readiness-check.py +0 -521
  480. paper_harness_cli-1.0.0/template/scripts/resolve-python.sh +0 -34
  481. paper_harness_cli-1.0.0/template/scripts/tex-env.sh +0 -124
  482. paper_harness_cli-1.0.0/template/story/README.md +0 -16
  483. paper_harness_cli-1.0.0/template/story/story-seed.md +0 -43
  484. paper_harness_cli-1.0.0/template/submission/README.md +0 -43
  485. paper_harness_cli-1.0.0/template/tex-env.example.toml +0 -35
  486. paper_harness_cli-1.0.0/tests/__init__.py +0 -1
  487. paper_harness_cli-1.0.0/tests/fixtures/editorial/boundary-led/editorial-model.yml +0 -71
  488. paper_harness_cli-1.0.0/tests/fixtures/editorial/boundary-led/fixture.yml +0 -9
  489. paper_harness_cli-1.0.0/tests/fixtures/editorial/boundary-led/results-hierarchy.yml +0 -26
  490. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/absolute-results-path.yml +0 -22
  491. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/baseline.yml +0 -22
  492. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/dangling-result.yml +0 -22
  493. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/dangling-story.yml +0 -22
  494. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/duplicate-id.yml +0 -22
  495. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/duplicate-key.yml +0 -23
  496. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/empty-role-reason.yml +0 -22
  497. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/invalid-stance.yml +0 -22
  498. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/move-cycle.yml +0 -22
  499. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/move-order-gap.yml +0 -22
  500. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/non-finite.yml +0 -22
  501. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/results-hierarchy.yml +0 -10
  502. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/single-story-no-reason.yml +0 -21
  503. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/traversal-results-path.yml +0 -22
  504. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/unknown-field.yml +0 -23
  505. paper_harness_cli-1.0.0/tests/fixtures/editorial/invalid/unsupported-schema-keyword.yml +0 -2
  506. paper_harness_cli-1.0.0/tests/fixtures/editorial/mechanism-led/editorial-model.yml +0 -71
  507. paper_harness_cli-1.0.0/tests/fixtures/editorial/mechanism-led/fixture.yml +0 -9
  508. paper_harness_cli-1.0.0/tests/fixtures/editorial/mechanism-led/results-hierarchy.yml +0 -26
  509. paper_harness_cli-1.0.0/tests/fixtures/editorial/negative-result-led/editorial-model.yml +0 -71
  510. paper_harness_cli-1.0.0/tests/fixtures/editorial/negative-result-led/fixture.yml +0 -9
  511. paper_harness_cli-1.0.0/tests/fixtures/editorial/negative-result-led/results-hierarchy.yml +0 -26
  512. paper_harness_cli-1.0.0/tests/fixtures/migration/editorial/README.md +0 -3
  513. paper_harness_cli-1.0.0/tests/fixtures/migration/issue/README.md +0 -3
  514. paper_harness_cli-1.0.0/tests/fixtures/migration/manuscript/README.md +0 -3
  515. paper_harness_cli-1.0.0/tests/fixtures/migration/mixed/cases.yml +0 -11
  516. paper_harness_cli-1.0.0/tests/fixtures/migration/publication/README.md +0 -3
  517. paper_harness_cli-1.0.0/tests/fixtures/migration/research/README.md +0 -3
  518. paper_harness_cli-1.0.0/tests/fixtures/models/invalid/dangling-editorial-claim.yml +0 -8
  519. paper_harness_cli-1.0.0/tests/fixtures/models/invalid/predicted-publication-input.yml +0 -10
  520. paper_harness_cli-1.0.0/tests/fixtures/models/invalid/stale-dependency-target.yml +0 -9
  521. paper_harness_cli-1.0.0/tests/fixtures/models/invalid/wrong-manuscript-reference-type.yml +0 -9
  522. paper_harness_cli-1.0.0/tests/helpers.py +0 -66
  523. paper_harness_cli-1.0.0/tests/p1b_fixture_support.py +0 -251
  524. paper_harness_cli-1.0.0/tests/test_argument_focus_check.py +0 -100
  525. paper_harness_cli-1.0.0/tests/test_authoring_intent_check.py +0 -123
  526. paper_harness_cli-1.0.0/tests/test_authority_bootstrap.py +0 -51
  527. paper_harness_cli-1.0.0/tests/test_block_flow_review_check.py +0 -74
  528. paper_harness_cli-1.0.0/tests/test_block_flow_review_skill.py +0 -90
  529. paper_harness_cli-1.0.0/tests/test_card_coverage_check.py +0 -82
  530. paper_harness_cli-1.0.0/tests/test_change_cli.py +0 -66
  531. paper_harness_cli-1.0.0/tests/test_change_planning.py +0 -131
  532. paper_harness_cli-1.0.0/tests/test_change_request.py +0 -85
  533. paper_harness_cli-1.0.0/tests/test_change_transaction.py +0 -149
  534. paper_harness_cli-1.0.0/tests/test_checker_helpers.py +0 -77
  535. paper_harness_cli-1.0.0/tests/test_claim_evidence_check.py +0 -112
  536. paper_harness_cli-1.0.0/tests/test_concept_term_check.py +0 -130
  537. paper_harness_cli-1.0.0/tests/test_content_first_check.py +0 -225
  538. paper_harness_cli-1.0.0/tests/test_cross_model_validation.py +0 -101
  539. paper_harness_cli-1.0.0/tests/test_current_specification_index.py +0 -46
  540. paper_harness_cli-1.0.0/tests/test_dependency_hash.py +0 -124
  541. paper_harness_cli-1.0.0/tests/test_develop_manuscript_content_skill.py +0 -72
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  548. paper_harness_cli-1.0.0/tests/test_figure_design_skill.py +0 -93
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  555. paper_harness_cli-1.0.0/tests/test_hops_plugin_skill_boundary.py +0 -39
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  557. paper_harness_cli-1.0.0/tests/test_issue_migration_adapter.py +0 -103
  558. paper_harness_cli-1.0.0/tests/test_issue_model.py +0 -348
  559. paper_harness_cli-1.0.0/tests/test_legacy_artifact_cutover.py +0 -93
  560. paper_harness_cli-1.0.0/tests/test_links_check.py +0 -60
  561. paper_harness_cli-1.0.0/tests/test_makefile_profiles.py +0 -178
  562. paper_harness_cli-1.0.0/tests/test_manuscript_migration_adapter.py +0 -92
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  565. paper_harness_cli-1.0.0/tests/test_model_migration_rollback.py +0 -158
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  578. paper_harness_cli-1.0.0/tests/test_p3_compile_materialize.py +0 -2264
  579. paper_harness_cli-1.0.0/tests/test_p3_compile_privacy_hardening.py +0 -76
  580. paper_harness_cli-1.0.0/tests/test_p3_compile_query_isolation.py +0 -237
  581. paper_harness_cli-1.0.0/tests/test_p3_compile_snapshot_safety.py +0 -497
  582. paper_harness_cli-1.0.0/tests/test_p3_compiler_types.py +0 -376
  583. paper_harness_cli-1.0.0/tests/test_p3_distribution.py +0 -107
  584. paper_harness_cli-1.0.0/tests/test_p3_documentation.py +0 -48
  585. paper_harness_cli-1.0.0/tests/test_p3_end_to_end.py +0 -53
  586. paper_harness_cli-1.0.0/tests/test_p3_manuscript_contract.py +0 -763
  587. paper_harness_cli-1.0.0/tests/test_p3_write_transaction.py +0 -162
  588. paper_harness_cli-1.0.0/tests/test_p3_writer_validation.py +0 -176
  589. paper_harness_cli-1.0.0/tests/test_p3_writer_workspace.py +0 -286
  590. paper_harness_cli-1.0.0/tests/test_p4_documentation.py +0 -36
  591. paper_harness_cli-1.0.0/tests/test_p4_p3_integration.py +0 -53
  592. paper_harness_cli-1.0.0/tests/test_p4_workflow_cli_mutation.py +0 -64
  593. paper_harness_cli-1.0.0/tests/test_p4_workflow_cli_readonly.py +0 -65
  594. paper_harness_cli-1.0.0/tests/test_p4_workflow_graph.py +0 -65
  595. paper_harness_cli-1.0.0/tests/test_p4_workflow_issue_model.py +0 -40
  596. paper_harness_cli-1.0.0/tests/test_p4_workflow_migration.py +0 -60
  597. paper_harness_cli-1.0.0/tests/test_p4_workflow_migration_cli.py +0 -33
  598. paper_harness_cli-1.0.0/tests/test_p4_workflow_mutation.py +0 -87
  599. paper_harness_cli-1.0.0/tests/test_p4_workflow_projection.py +0 -47
  600. paper_harness_cli-1.0.0/tests/test_p4_workflow_types.py +0 -82
  601. paper_harness_cli-1.0.0/tests/test_paper_ir_spec.py +0 -160
  602. paper_harness_cli-1.0.0/tests/test_paper_layer_cards.py +0 -84
  603. paper_harness_cli-1.0.0/tests/test_paperops2_design_docs.py +0 -563
  604. paper_harness_cli-1.0.0/tests/test_paperops_checks_helpers.py +0 -74
  605. paper_harness_cli-1.0.0/tests/test_paperops_internal_layout.py +0 -111
  606. paper_harness_cli-1.0.0/tests/test_paperops_model_catalog.py +0 -477
  607. paper_harness_cli-1.0.0/tests/test_paperops_model_check.py +0 -942
  608. paper_harness_cli-1.0.0/tests/test_paperops_model_registry.py +0 -422
  609. paper_harness_cli-1.0.0/tests/test_paperops_schema.py +0 -316
  610. paper_harness_cli-1.0.0/tests/test_pops_cli.py +0 -1457
  611. paper_harness_cli-1.0.0/tests/test_pops_compile_cli.py +0 -172
  612. paper_harness_cli-1.0.0/tests/test_pops_model_cli.py +0 -103
  613. paper_harness_cli-1.0.0/tests/test_pops_write_cli.py +0 -139
  614. paper_harness_cli-1.0.0/tests/test_predicted_result_drafting_skill.py +0 -146
  615. paper_harness_cli-1.0.0/tests/test_predicted_results_check.py +0 -156
  616. paper_harness_cli-1.0.0/tests/test_public_terms_check.py +0 -124
  617. paper_harness_cli-1.0.0/tests/test_publication_migration_adapter.py +0 -70
  618. paper_harness_cli-1.0.0/tests/test_publication_model.py +0 -273
  619. paper_harness_cli-1.0.0/tests/test_quantity_integrity_check.py +0 -66
  620. paper_harness_cli-1.0.0/tests/test_readiness_check.py +0 -238
  621. paper_harness_cli-1.0.0/tests/test_release_version_truth.py +0 -158
  622. paper_harness_cli-1.0.0/tests/test_research_migration_adapter.py +0 -245
  623. paper_harness_cli-1.0.0/tests/test_research_model.py +0 -612
  624. paper_harness_cli-1.0.0/tests/test_research_request_handoff_check.py +0 -165
  625. paper_harness_cli-1.0.0/tests/test_root_guidance.py +0 -96
  626. paper_harness_cli-1.0.0/tests/test_root_smoke_artifacts.py +0 -36
  627. paper_harness_cli-1.0.0/tests/test_scaffold_package_boundary.py +0 -87
  628. paper_harness_cli-1.0.0/tests/test_scratch_archive.py +0 -271
  629. paper_harness_cli-1.0.0/tests/test_section_contract_check.py +0 -525
  630. paper_harness_cli-1.0.0/tests/test_section_depth_check.py +0 -143
  631. paper_harness_cli-1.0.0/tests/test_setup_resume_skill_scope.py +0 -64
  632. paper_harness_cli-1.0.0/tests/test_skill_mirror_check.py +0 -160
  633. paper_harness_cli-1.0.0/tests/test_storyline_check.py +0 -102
  634. paper_harness_cli-1.0.0/tests/test_storyline_layer.py +0 -114
  635. paper_harness_cli-1.0.0/tests/test_subagent_orchestrator.py +0 -107
  636. paper_harness_cli-1.0.0/tests/test_submission_drift_check.py +0 -94
  637. paper_harness_cli-1.0.0/tests/test_submission_gate_skill.py +0 -102
  638. paper_harness_cli-1.0.0/tests/test_template_build_fallback.py +0 -259
  639. paper_harness_cli-1.0.0/tests/test_tex_structure.py +0 -65
  640. paper_harness_cli-1.0.0/tests/test_workflow_kernel.py +0 -48
  641. {paper_harness_cli-1.0.0/template/_paperops/refs/summaries → paper_harness_cli-2.2.0/src/paperops/_scaffold/manuscript/sections}/.gitkeep +0 -0
  642. /paper_harness_cli-1.0.0/template/manuscript/mirror/reports/.gitkeep → /paper_harness_cli-2.2.0/tests/__init__.py +0 -0

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